pycom01g16500

sugar phosphate phosphate translocator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Forward (+)
16067351 .. 16067662
312 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 312 bp
ATGAAGGGGAAGAGCCGCTTGTTCACGATCGGGCTCGTCACCGCCTGGTACTCATCCAACATTGGGGTTTTGCTGCTGAACAAGTACTTGCTCAGCAACTATGGCTTCAAGTACCCGATCTTCCTCACCATGTGCCACATGACGGCTTGCTCTCTGCTCAGCTACGTCGCAATTGCTTGGATGAAGATGGTTCCGATGCAGACCATTCGATCCCGGGTCCAATTCTTGAACGATCATGGCGCTCAGCCTGGTGTTTTGTGTCTCCGTCGTGTTTGGGAACATTTCGCTGCGGTATTTGCCCGTGTCGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

104

Amino Acids

11.79

Weight (kDa)

10.03

Isoelectric Point (pI)

42.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 12 - 72 8.5e-06 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 16, 42, 290
AclWI GGATC 1 cut(s) 204
AdeI CACNNNGTG 1 cut(s) 132
AfaI GTAC 3 cut(s) 50, 86, 113
AfiI CCNNNNNNNGG 2 cut(s) 63, 142
AgsI TTSAA 2 cut(s) 109, 229
AjnI CCWGG 2 cut(s) 44, 247
AluBI AGCT 1 cut(s) 162
AluI AGCT 1 cut(s) 162
Alw26I GTCTC 1 cut(s) 266
AlwI GGATC 1 cut(s) 204
Ama87I CYCGRG 1 cut(s) 213
ApeKI GCWGC 2 cut(s) 73, 287
AspLEI GCGC 1 cut(s) 242
AspS9I GGNCC 1 cut(s) 217
AsuC2I CCSGG 2 cut(s) 214, 215
AsuHPI GGTGA 2 cut(s) 31, 118
AvaI CYCGRG 1 cut(s) 213
AvaII GGWCC 1 cut(s) 217
BanII GRGCYC 1 cut(s) 36
BarI GAAGNNNNNNTAC 2 cut(s) 104, 136
BbvI GCAGC 2 cut(s) 60, 274
BccI CCATC 1 cut(s) 181
BceAI ACGGC 1 cut(s) 159
BcgI CGANNNNNNTGC 2 cut(s) 188, 222
BciT130I CCWGG 2 cut(s) 46, 249
BcnI CCSGG 2 cut(s) 214, 215
BcoDI GTCTC 1 cut(s) 266
BfoI RGCGCY 1 cut(s) 243
BisI GCNGC 3 cut(s) 16, 74, 288
BlpI GCTNAGC 3 cut(s) 92, 158, 243
BlsI GCNGC 3 cut(s) 17, 75, 289
BmcAI AGTACT 1 cut(s) 86
Bme1390I CCNGG 4 cut(s) 46, 214, 215, 249
Bme18I GGWCC 1 cut(s) 217
BmeT110I CYCGRG 1 cut(s) 213
BmgT120I GGNCC 1 cut(s) 217
BmiI GGNNCC 2 cut(s) 192, 218
BmrFI CCNGG 4 cut(s) 46, 214, 215, 249
BmsI GCATC 1 cut(s) 186
Bpu1102I GCTNAGC 3 cut(s) 92, 158, 243
BpuMI CCSGG 2 cut(s) 214, 215
BsaJI CCNNGG 1 cut(s) 213
Bsc4I CCNNNNNNNGG 2 cut(s) 63, 142
BseBI CCWGG 2 cut(s) 46, 249
BseDI CCNNGG 1 cut(s) 213
BseGI GGATG 2 cut(s) 53, 186
BseLI CCNNNNNNNGG 2 cut(s) 63, 142
BseMII CTCAG 3 cut(s) 106, 172, 257
BseXI GCAGC 2 cut(s) 60, 274
Bsh1285I CGRYCG 1 cut(s) 30
BsiEI CGRYCG 1 cut(s) 30
BsiHKCI CYCGRG 1 cut(s) 213
BsiSI CCGG 1 cut(s) 214
BslI CCNNNNNNNGG 2 cut(s) 63, 142
BsmAI GTCTC 1 cut(s) 266
BsoBI CYCGRG 1 cut(s) 213
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 4 cut(s) 27, 117, 209, 232
Bsp1720I GCTNAGC 3 cut(s) 92, 158, 243
BspACI CCGC 3 cut(s) 16, 42, 290
BspCNI CTCAG 3 cut(s) 105, 171, 256
BspLI GGNNCC 2 cut(s) 192, 218
BspPI GGATC 1 cut(s) 204
BspQI GCTCTTC 1 cut(s) 5
BssECI CCNNGG 1 cut(s) 213
BssMI GATC 4 cut(s) 27, 117, 209, 232
Bst2UI CCWGG 2 cut(s) 46, 249
Bst6I CTCTTC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 148
BstDEI CTNAG 3 cut(s) 92, 158, 243
BstF5I GGATG 2 cut(s) 53, 186
BstH2I RGCGCY 1 cut(s) 243
BstHHI GCGC 1 cut(s) 242
BstKTI GATC 4 cut(s) 30, 120, 212, 235
BstMAI GTCTC 1 cut(s) 266
BstMBI GATC 4 cut(s) 27, 117, 209, 232
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 2 cut(s) 102, 296
BstNI CCWGG 2 cut(s) 46, 249
BstSCI CCNGG 4 cut(s) 44, 212, 213, 247
BstV1I GCAGC 2 cut(s) 60, 274
BtsCI GGATG 2 cut(s) 53, 186
Cac8I GCNNGC 1 cut(s) 148
CfoI GCGC 1 cut(s) 242
Cfr13I GGNCC 1 cut(s) 217
Cfr9I CCCGGG 1 cut(s) 213
Csp6I GTAC 3 cut(s) 49, 85, 112
CviAII CATG 3 cut(s) 130, 139, 236
CviJI RGCY 6 cut(s) 15, 34, 105, 146, 162, 247
CviKI_1 RGCY 6 cut(s) 15, 34, 105, 146, 162, 247
CviQI GTAC 3 cut(s) 49, 85, 112
DdeI CTNAG 3 cut(s) 92, 158, 243
DpnI GATC 4 cut(s) 29, 119, 211, 234
DpnII GATC 4 cut(s) 27, 117, 209, 232
DraIII CACNNNGTG 1 cut(s) 132
Eam1104I CTCTTC 1 cut(s) 5
EarI CTCTTC 1 cut(s) 5
Eco24I GRGCYC 1 cut(s) 36
Eco47I GGWCC 1 cut(s) 217
Eco88I CYCGRG 1 cut(s) 213
EcoRII CCWGG 2 cut(s) 44, 247
EcoT38I GRGCYC 1 cut(s) 36
FaeI CATG 3 cut(s) 133, 142, 239
FaiI YATR 4 cut(s) 102, 131, 140, 237
FalI AAGNNNNNCTT 1 cut(s) 34
FatI CATG 3 cut(s) 129, 138, 235
Fnu4HI GCNGC 3 cut(s) 16, 74, 288
FokI GGATG 2 cut(s) 40, 193
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 3 cut(s) 16, 74, 288
GlaI GCGC 1 cut(s) 241
GluI GCNGC 3 cut(s) 16, 74, 288
HaeII RGCGCY 1 cut(s) 243
HapII CCGG 1 cut(s) 214
HhaI GCGC 1 cut(s) 242
Hin1II CATG 3 cut(s) 133, 142, 239
Hin6I GCGC 1 cut(s) 240
HinP1I GCGC 1 cut(s) 240
HpaII CCGG 1 cut(s) 214
HphI GGTGA 2 cut(s) 31, 118
Hpy166II GTNNAC 1 cut(s) 24
Hpy188I TCNGA 1 cut(s) 195
Hpy188III TCNNGA 2 cut(s) 25, 226
Hpy8I GTNNAC 1 cut(s) 24
Hpy99I CGWCG 2 cut(s) 170, 270
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 1 cut(s) 199
HpyF10VI GCNNNNNNNGC 2 cut(s) 102, 296
HpyF3I CTNAG 3 cut(s) 92, 158, 243
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 3 cut(s) 133, 142, 239
HspAI GCGC 1 cut(s) 240
Kzo9I GATC 4 cut(s) 27, 117, 209, 232
LguI GCTCTTC 1 cut(s) 5
LpnPI CCDG 5 cut(s) 31, 58, 227, 234, 261
Lsp1109I GCAGC 2 cut(s) 60, 274
LweI GCATC 1 cut(s) 186
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 1 cut(s) 37
MalI GATC 4 cut(s) 29, 119, 211, 234
MboI GATC 4 cut(s) 27, 117, 209, 232
MboII GAAGA 3 cut(s) 22, 112, 196
MfeI CAATTG 1 cut(s) 171
MhlI GDGCHC 1 cut(s) 36
MluCI AATT 2 cut(s) 171, 221
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 1 cut(s) 134
MseI TTAA 1 cut(s) 310
MspI CCGG 1 cut(s) 214
MspR9I CCNGG 4 cut(s) 46, 214, 215, 249
MunI CAATTG 1 cut(s) 171
MvaI CCWGG 2 cut(s) 46, 249
MwoI GCNNNNNNNGC 2 cut(s) 102, 296
NciI CCSGG 2 cut(s) 214, 215
NdeII GATC 4 cut(s) 27, 117, 209, 232
NlaIII CATG 3 cut(s) 133, 142, 239
NlaIV GGNNCC 2 cut(s) 192, 218
NmuCI GTSAC 1 cut(s) 37
PciSI GCTCTTC 1 cut(s) 5
PkrI GCNGC 3 cut(s) 17, 75, 289
Ple19I CGATCG 1 cut(s) 30
Psp6I CCWGG 2 cut(s) 44, 247
PspGI CCWGG 2 cut(s) 44, 247
PspN4I GGNNCC 2 cut(s) 192, 218
PspPI GGNCC 1 cut(s) 217
PvuI CGATCG 1 cut(s) 30
RsaI GTAC 3 cut(s) 50, 86, 113
RsaNI GTAC 3 cut(s) 49, 85, 112
SapI GCTCTTC 1 cut(s) 5
SaqAI TTAA 1 cut(s) 310
SatI GCNGC 3 cut(s) 16, 74, 288
Sau3AI GATC 4 cut(s) 27, 117, 209, 232
Sau96I GGNCC 1 cut(s) 217
ScaI AGTACT 1 cut(s) 86
ScrFI CCNGG 4 cut(s) 46, 214, 215, 249
SduI GDGCHC 1 cut(s) 36
SetI ASST 2 cut(s) 164, 168
SfaNI GCATC 1 cut(s) 186
SinI GGWCC 1 cut(s) 217
SmaI CCCGGG 1 cut(s) 215
Sse9I AATT 2 cut(s) 171, 221
SsiI CCGC 3 cut(s) 16, 42, 290
StyD4I CCNGG 4 cut(s) 44, 212, 213, 247
TaiI ACGT 1 cut(s) 168
TaqI TCGA 1 cut(s) 208
TasI AATT 2 cut(s) 171, 221
TatI WGTACW 1 cut(s) 84
TauI GCSGC 1 cut(s) 18
Tru1I TTAA 1 cut(s) 310
Tru9I TTAA 1 cut(s) 310
TseFI GTSAC 1 cut(s) 37
TseI GCWGC 2 cut(s) 73, 287
Tsp45I GTSAC 1 cut(s) 37
TspDTI ATGAA 2 cut(s) 17, 197
TspGWI ACGGA 1 cut(s) 254
TspMI CCCGGG 1 cut(s) 213
VpaK11BI GGWCC 1 cut(s) 217
XmaI CCCGGG 1 cut(s) 213
ZrmI AGTACT 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.