Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

16098328 .. 16100379

Gene Structure 2052 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGACTTCTTAGGGATTCAATTTCGAACAATGTTGTTGGTTGCCTTCTTGTATACGGCATTCGTTGAGTCCTTGATTCGACACTATAAGTTCAGTGTGGTCTTCAAGAGCACAACAAATCTTTGTTCGTCGAAGCACATCGTCACCATAAATGGGAAGTTCCCCGGACCAGCTCCATATGCAAGGGAAGATTATACAGTAATTGCAAAGGTCACCAACCATGTGAATCAGTGTCACAATCCACTGTCTGGCCTGCCACCAAATGTCTCGGATGCACACACCATCAGTGGCCATGCCGGACCTTTTCCTGGTTGCTCTTCTCAGGGTACTGAAATGGGGGGCTACACCATACATGTTGAAAGTGGCAAGACCTACTTGCTACGCATCGTGAACGCCGCGCTGAATGATGACTTGTTCTTCAAGGTAGCCGGGCCCAACCTAACCGCTGGAGAAGTCGATGCCTCCTACACTAAGCCGTTCCAAACTGATACAATATTCATGAGTACAGGCCAAATCACAAATGCAACTCTAACAGCAAACCAGGGCATTGGCAAGTCCTTCATAGCAGCCTCTACTTCCAGGCCAAATCACAAATGCAACTCTAACAGCAAACCAGGGCATTGGCAAGTCCTTCATAGCAGCCTCTACTGCCAACGTCCAATTAACCATAGAATATTCGTTTTTTTCATCATTTCTGTTGGTGTAAATCCATGTGGTACATCGGTCAATGGAAGCAAACTAGTAGCTGCCATGAACAATGTTAGCTTTATGATGCCATCTATCTTCCCTCTTCAAGCGTATTACTACAACGTAAAGGGAGTCTACACACTTGATTTTCCGGCAAACCCTCCAAATCCTTTCAATTACACTGGCATATCTCCGGCGAACATTCAGACCAAAAACAGGACAAGAATATACCCGCTGGAGTACAAATTCGACTGTTCAGATTGTGCTAGATACAAGGTACTGCTGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009832 GO:0009834 GO:0009987 GO:0016491 GO:0016722 GO:0019438 GO:0019748 GO:0042546 GO:0044085 GO:0044237 GO:0044249 GO:0044550 GO:0055114 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

326

Amino Acids

35.78

Weight (kDa)

9.18

Isoelectric Point (pI)

25.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase	PF00394	85 - 194	1.3e-23	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	248
AccI	GTMKAC	2 cut(s)	53, 822
AccII	CGCG	1 cut(s)	398
AciI	CCGC	3 cut(s)	396, 444, 920
AcoI	YGGCCR	1 cut(s)	289
AcsI	RAATTY	1 cut(s)	932
AfaI	GTAC	5 cut(s)	328, 505, 718, 929, 966
AfiI	CCNNNNNNNGG	4 cut(s)	153, 248, 308, 903
AflIII	ACRYGT	1 cut(s)	352
AgsI	TTSAA	6 cut(s)	20, 106, 359, 421, 794, 862
AhlI	ACTAGT	1 cut(s)	739
AjnI	CCWGG	4 cut(s)	307, 540, 578, 613
AluBI	AGCT	3 cut(s)	173, 746, 765
AluI	AGCT	3 cut(s)	173, 746, 765
Alw21I	GWGCWC	1 cut(s)	113
Alw26I	GTCTC	1 cut(s)	271
AoxI	GGCC	5 cut(s)	250, 289, 431, 508, 581
ApaI	GGGCCC	1 cut(s)	435
ApeKI	GCWGC	3 cut(s)	566, 639, 746
ApoI	RAATTY	1 cut(s)	932
AspLEI	GCGC	1 cut(s)	400
AspS9I	GGNCC	4 cut(s)	167, 299, 431, 432
AsuC2I	CCSGG	2 cut(s)	165, 430
AsuHPI	GGTGA	2 cut(s)	136, 205
AsuII	TTCGAA	1 cut(s)	25
AvaII	GGWCC	2 cut(s)	167, 299
BaeGI	GKGCMC	1 cut(s)	435
BaeI	ACNNNNGTAYC	3 cut(s)	708, 741, 956
BalI	TGGCCA	1 cut(s)	291
BanII	GRGCYC	1 cut(s)	435
BbsI	GAAGAC	1 cut(s)	94
Bbv12I	GWGCWC	1 cut(s)	113
BbvI	GCAGC	3 cut(s)	578, 651, 733
BccI	CCATC	2 cut(s)	290, 784
BceAI	ACGGC	2 cut(s)	72, 460
BciT130I	CCWGG	4 cut(s)	309, 542, 580, 615
BcnI	CCSGG	2 cut(s)	165, 430
BcoDI	GTCTC	1 cut(s)	271
BcuI	ACTAGT	1 cut(s)	739
BfaI	CTAG	2 cut(s)	740, 954
BisI	GCNGC	4 cut(s)	396, 567, 640, 747
BlsI	GCNGC	4 cut(s)	397, 568, 641, 748
Bme1390I	CCNGG	6 cut(s)	165, 309, 430, 542, 580, 615
Bme18I	GGWCC	2 cut(s)	167, 299
BmgT120I	GGNCC	4 cut(s)	167, 299, 431, 432
BmiI	GGNNCC	1 cut(s)	433
BmrFI	CCNGG	6 cut(s)	165, 309, 430, 542, 580, 615
BmsI	GCATC	4 cut(s)	262, 393, 448, 762
BpiI	GAAGAC	1 cut(s)	94
BpmI	CTGGAG	2 cut(s)	468, 944
Bpu14I	TTCGAA	1 cut(s)	25
BpuMI	CCSGG	2 cut(s)	165, 430
BsaJI	CCNNGG	3 cut(s)	163, 541, 614
Bsc4I	CCNNNNNNNGG	4 cut(s)	153, 248, 308, 903
Bse1I	ACTGG	1 cut(s)	874
BseBI	CCWGG	4 cut(s)	309, 542, 580, 615
BseDI	CCNNGG	3 cut(s)	163, 541, 614
BseGI	GGATG	1 cut(s)	277
BseLI	CCNNNNNNNGG	4 cut(s)	153, 248, 308, 903
BseMII	CTCAG	1 cut(s)	335
BseNI	ACTGG	1 cut(s)	874
BseSI	GKGCMC	1 cut(s)	435
BseXI	GCAGC	3 cut(s)	578, 651, 733
Bsh1236I	CGCG	1 cut(s)	398
BshFI	GGCC	5 cut(s)	252, 291, 433, 510, 583
BsiHKAI	GWGCWC	1 cut(s)	113
BsiSI	CCGG	5 cut(s)	165, 297, 429, 839, 881
BslI	CCNNNNNNNGG	4 cut(s)	153, 248, 308, 903
BsmAI	GTCTC	1 cut(s)	271
BsmI	GAATGC	1 cut(s)	59
BsnI	GGCC	5 cut(s)	252, 291, 433, 510, 583
Bsp119I	TTCGAA	1 cut(s)	25
Bsp120I	GGGCCC	1 cut(s)	431
Bsp1286I	GDGCHC	2 cut(s)	113, 435
BspACI	CCGC	3 cut(s)	396, 444, 920
BspANI	GGCC	5 cut(s)	252, 291, 433, 510, 583
BspCNI	CTCAG	1 cut(s)	334
BspFNI	CGCG	1 cut(s)	398
BspHI	TCATGA	1 cut(s)	498
BspLI	GGNNCC	1 cut(s)	433
BspQI	GCTCTTC	1 cut(s)	322
BspT104I	TTCGAA	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	874
BssECI	CCNNGG	3 cut(s)	163, 541, 614
BssNAI	GTATAC	1 cut(s)	54
Bst1107I	GTATAC	1 cut(s)	54
Bst2UI	CCWGG	4 cut(s)	309, 542, 580, 615
Bst4CI	ACNGT	3 cut(s)	199, 246, 941
Bst6I	CTCTTC	2 cut(s)	322, 795
BstBI	TTCGAA	1 cut(s)	25
BstC8I	GCNNGC	1 cut(s)	254
BstDEI	CTNAG	3 cut(s)	10, 321, 471
BstEII	GGTNACC	1 cut(s)	211
BstF5I	GGATG	1 cut(s)	277
BstFNI	CGCG	1 cut(s)	398
BstHHI	GCGC	1 cut(s)	400
BstMAI	GTCTC	1 cut(s)	271
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 648
BstNI	CCWGG	4 cut(s)	309, 542, 580, 615
BstNSI	RCATGY	1 cut(s)	356
BstPI	GGTNACC	1 cut(s)	211
BstSCI	CCNGG	6 cut(s)	163, 307, 428, 540, 578, 613
BstSLI	GKGCMC	1 cut(s)	435
BstUI	CGCG	1 cut(s)	398
BstV1I	GCAGC	3 cut(s)	578, 651, 733
BstV2I	GAAGAC	1 cut(s)	94
BstXI	CCANNNNNNTGG	2 cut(s)	548, 621
BstZ17I	GTATAC	1 cut(s)	54
BsuRI	GGCC	5 cut(s)	252, 291, 433, 510, 583
BtsCI	GGATG	1 cut(s)	277
BtsIMutI	CAGTG	5 cut(s)	100, 236, 242, 292, 867
Cac8I	GCNNGC	1 cut(s)	254
CciI	TCATGA	1 cut(s)	498
CfoI	GCGC	1 cut(s)	400
Cfr13I	GGNCC	4 cut(s)	167, 299, 431, 432
Csp6I	GTAC	5 cut(s)	327, 504, 717, 928, 965
CviAII	CATG	6 cut(s)	221, 293, 353, 499, 711, 751
CviQI	GTAC	5 cut(s)	327, 504, 717, 928, 965
DdeI	CTNAG	3 cut(s)	10, 321, 471
EaeI	YGGCCR	1 cut(s)	289
Eam1104I	CTCTTC	2 cut(s)	322, 795
EarI	CTCTTC	2 cut(s)	322, 795
Eco24I	GRGCYC	1 cut(s)	435
Eco47I	GGWCC	2 cut(s)	167, 299
Eco91I	GGTNACC	1 cut(s)	211
EcoO65I	GGTNACC	1 cut(s)	211
EcoRII	CCWGG	4 cut(s)	307, 540, 578, 613
EcoT38I	GRGCYC	1 cut(s)	435
FaeI	CATG	6 cut(s)	224, 296, 356, 502, 714, 754
FalI	AAGNNNNNCTT	2 cut(s)	359, 391
FatI	CATG	6 cut(s)	220, 292, 352, 498, 710, 750
FauI	CCCGC	1 cut(s)	927
FauNDI	CATATG	1 cut(s)	178
FblI	GTMKAC	2 cut(s)	53, 822
Fnu4HI	GCNGC	4 cut(s)	396, 567, 640, 747
FokI	GGATG	1 cut(s)	284
FriOI	GRGCYC	1 cut(s)	435
Fsp4HI	GCNGC	4 cut(s)	396, 567, 640, 747
FspBI	CTAG	2 cut(s)	740, 954
GlaI	GCGC	1 cut(s)	399
GluI	GCNGC	4 cut(s)	396, 567, 640, 747
GsuI	CTGGAG	2 cut(s)	468, 944
HaeIII	GGCC	5 cut(s)	252, 291, 433, 510, 583
HapII	CCGG	5 cut(s)	165, 297, 429, 839, 881
HhaI	GCGC	1 cut(s)	400
Hin1II	CATG	6 cut(s)	224, 296, 356, 502, 714, 754
Hin6I	GCGC	1 cut(s)	398
HinP1I	GCGC	1 cut(s)	398
HinfI	GANTC	5 cut(s)	16, 68, 76, 226, 819
HpaII	CCGG	5 cut(s)	165, 297, 429, 839, 881
HphI	GGTGA	2 cut(s)	136, 205
Hpy166II	GTNNAC	3 cut(s)	54, 391, 823
Hpy188I	TCNGA	3 cut(s)	271, 894, 946
Hpy188III	TCNNGA	3 cut(s)	106, 388, 499
Hpy8I	GTNNAC	3 cut(s)	54, 391, 823
Hpy99I	CGWCG	1 cut(s)	133
HpyAV	CCTTC	3 cut(s)	55, 568, 641
HpyCH4III	ACNGT	3 cut(s)	199, 246, 941
HpyCH4IV	ACGT	2 cut(s)	655, 810
HpyCH4V	TGCA	5 cut(s)	182, 206, 275, 524, 597
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 648
HpyF3I	CTNAG	3 cut(s)	10, 321, 471
HpySE526I	ACGT	2 cut(s)	655, 810
Hsp92II	CATG	6 cut(s)	224, 296, 356, 502, 714, 754
HspAI	GCGC	1 cut(s)	398
LguI	GCTCTTC	1 cut(s)	322
LmnI	GCTCC	1 cut(s)	178
Lsp1109I	GCAGC	3 cut(s)	578, 651, 733
LweI	GCATC	4 cut(s)	262, 393, 448, 762
MaeI	CTAG	2 cut(s)	740, 954
MaeII	ACGT	2 cut(s)	655, 810
MaeIII	GTNAC	3 cut(s)	142, 211, 233
MboII	GAAGA	6 cut(s)	94, 200, 309, 409, 775, 782
MhlI	GDGCHC	2 cut(s)	113, 435
MlsI	TGGCCA	1 cut(s)	291
MluCI	AATT	5 cut(s)	20, 201, 660, 862, 932
MluNI	TGGCCA	1 cut(s)	291
MlyI	GAGTC	2 cut(s)	77, 828
MnlI	CCTC	5 cut(s)	472, 580, 653, 798, 858
Mox20I	TGGCCA	1 cut(s)	291
MscI	TGGCCA	1 cut(s)	291
MseI	TTAA	1 cut(s)	663
Msp20I	TGGCCA	1 cut(s)	291
MspA1I	CMGCKG	2 cut(s)	446, 922
MspI	CCGG	5 cut(s)	165, 297, 429, 839, 881
MspR9I	CCNGG	6 cut(s)	165, 309, 430, 542, 580, 615
Mva1269I	GAATGC	1 cut(s)	59
MvaI	CCWGG	4 cut(s)	309, 542, 580, 615
MvnI	CGCG	1 cut(s)	398
MwoI	GCNNNNNNNGC	2 cut(s)	179, 648
NciI	CCSGG	2 cut(s)	165, 430
NdeI	CATATG	1 cut(s)	178
NlaIII	CATG	6 cut(s)	224, 296, 356, 502, 714, 754
NlaIV	GGNNCC	1 cut(s)	433
NmuCI	GTSAC	3 cut(s)	142, 211, 233
NspI	RCATGY	1 cut(s)	356
NspV	TTCGAA	1 cut(s)	25
PagI	TCATGA	1 cut(s)	498
PciI	ACATGT	1 cut(s)	352
PciSI	GCTCTTC	1 cut(s)	322
PctI	GAATGC	1 cut(s)	59
PfeI	GAWTC	3 cut(s)	16, 76, 226
PflMI	CCANNNNNTGG	1 cut(s)	248
PkrI	GCNGC	4 cut(s)	397, 568, 641, 748
PleI	GAGTC	2 cut(s)	76, 827
PpsI	GAGTC	2 cut(s)	76, 827
PscI	ACATGT	1 cut(s)	352
Psp6I	CCWGG	4 cut(s)	307, 540, 578, 613
PspEI	GGTNACC	1 cut(s)	211
PspGI	CCWGG	4 cut(s)	307, 540, 578, 613
PspN4I	GGNNCC	1 cut(s)	433
PspOMI	GGGCCC	1 cut(s)	431
PspPI	GGNCC	4 cut(s)	167, 299, 431, 432
RsaI	GTAC	5 cut(s)	328, 505, 718, 929, 966
RsaNI	GTAC	5 cut(s)	327, 504, 717, 928, 965
SapI	GCTCTTC	1 cut(s)	322
SaqAI	TTAA	1 cut(s)	663
SatI	GCNGC	4 cut(s)	396, 567, 640, 747
Sau96I	GGNCC	4 cut(s)	167, 299, 431, 432
SchI	GAGTC	2 cut(s)	77, 828
ScrFI	CCNGG	6 cut(s)	165, 309, 430, 542, 580, 615
SduI	GDGCHC	2 cut(s)	113, 435
SfaNI	GCATC	4 cut(s)	262, 393, 448, 762
SfuI	TTCGAA	1 cut(s)	25
SinI	GGWCC	2 cut(s)	167, 299
SpeI	ACTAGT	1 cut(s)	739
Sse9I	AATT	5 cut(s)	20, 201, 660, 862, 932
SsiI	CCGC	3 cut(s)	396, 444, 920
SspI	AATATT	2 cut(s)	495, 675
SspMI	CTAG	2 cut(s)	740, 954
StyD4I	CCNGG	6 cut(s)	163, 307, 428, 540, 578, 613
TaaI	ACNGT	3 cut(s)	199, 246, 941
TaiI	ACGT	2 cut(s)	658, 813
TaqI	TCGA	5 cut(s)	25, 79, 131, 456, 936
TaqII	GACCGA	1 cut(s)	712
TasI	AATT	5 cut(s)	20, 201, 660, 862, 932
TatI	WGTACW	2 cut(s)	503, 927
TauI	GCSGC	1 cut(s)	398
TfiI	GAWTC	3 cut(s)	16, 76, 226
Tru1I	TTAA	1 cut(s)	663
Tru9I	TTAA	1 cut(s)	663
TscAI	CASTG	5 cut(s)	100, 236, 249, 292, 874
TseFI	GTSAC	3 cut(s)	142, 211, 233
TseI	GCWGC	3 cut(s)	566, 639, 746
Tsp45I	GTSAC	3 cut(s)	142, 211, 233
TspDTI	ATGAA	5 cut(s)	487, 550, 623, 676, 767
TspRI	CASTG	5 cut(s)	100, 236, 249, 292, 874
Van91I	CCANNNNNTGG	1 cut(s)	248
VpaK11BI	GGWCC	2 cut(s)	167, 299
XapI	RAATTY	1 cut(s)	932
XceI	RCATGY	1 cut(s)	356
XmiI	GTMKAC	2 cut(s)	53, 822
XspI	CTAG	2 cut(s)	740, 954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.