pycom01g16630

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Reverse (-)
16143752 .. 16144738
987 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 417 bp
ATGGTGAGTAATCCTTCCATGCAATTTATGCTGTATGAAACTATGTTGAAGAAGCTGAAACAAAGGCGTGCCTTGAATAAGAAGGGTAACAGCGGGGTTACTGCTTTAGAGATATTTTTTCTTGGTGCTTTGGCGAAACTAGGGGCTACAGTTGTGACATATCCTCTTCTAGTCGTAAAGTCGAGGCTTCAAGCAAAACAGGTTACAAACGGAGACAAAAGGCAACACTATAAAGGCACATCAGATGCTATTTTAAAGATGATTCGGTATGAAGGACTTTACGGGTTCTACAAAGGGATGGGAACGAAAATAGTACAAAGTGTACTCGCAGCTGCTGTTCTGTTCATGATTAAGGAGGAACTTGTCAATGGCGCTCGATTCTTGCTCACCAGCAAAGTAAAATCAAAACCTCCGTAG

Protein Analysis

139

Amino Acids

15.36

Weight (kDa)

10.26

Isoelectric Point (pI)

24.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 34 - 122 2.7e-19 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 93
AfaI GTAC 2 cut(s) 315, 324
AgsI TTSAA 3 cut(s) 49, 76, 191
AluBI AGCT 2 cut(s) 55, 332
AluI AGCT 2 cut(s) 55, 332
Alw26I GTCTC 1 cut(s) 207
AlwNI CAGNNNCTG 1 cut(s) 335
ApeKI GCWGC 2 cut(s) 329, 332
AspLEI GCGC 1 cut(s) 374
AsuHPI GGTGA 2 cut(s) 16, 379
BbvI GCAGC 2 cut(s) 319, 341
BccI CCATC 1 cut(s) 292
BcoDI GTCTC 1 cut(s) 207
BfaI CTAG 2 cut(s) 140, 170
BfmI CTRYAG 1 cut(s) 147
BfoI RGCGCY 1 cut(s) 375
BisI GCNGC 2 cut(s) 330, 333
BlsI GCNGC 2 cut(s) 331, 334
BmsI GCATC 1 cut(s) 235
BseGI GGATG 1 cut(s) 303
BseXI GCAGC 2 cut(s) 319, 341
BsmAI GTCTC 1 cut(s) 207
BspACI CCGC 1 cut(s) 93
BspHI TCATGA 1 cut(s) 345
Bst4CI ACNGT 1 cut(s) 151
Bst6I CTCTTC 1 cut(s) 171
BstAPI GCANNNNNTGC 1 cut(s) 28
BstC8I GCNNGC 1 cut(s) 69
BstF5I GGATG 1 cut(s) 303
BstH2I RGCGCY 1 cut(s) 375
BstHHI GCGC 1 cut(s) 374
BstMAI GTCTC 1 cut(s) 207
BstMWI GCNNNNNNNGC 1 cut(s) 28
BstSFI CTRYAG 1 cut(s) 147
BstV1I GCAGC 2 cut(s) 319, 341
BtsCI GGATG 1 cut(s) 303
Cac8I GCNNGC 1 cut(s) 69
CaiI CAGNNNCTG 1 cut(s) 335
CciI TCATGA 1 cut(s) 345
CfoI GCGC 1 cut(s) 374
Csp6I GTAC 2 cut(s) 314, 323
CviAII CATG 2 cut(s) 19, 346
CviJI RGCY 4 cut(s) 55, 146, 187, 332
CviKI_1 RGCY 4 cut(s) 55, 146, 187, 332
CviQI GTAC 2 cut(s) 314, 323
DraI TTTAAA 1 cut(s) 255
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
FaeI CATG 2 cut(s) 22, 349
FaiI YATR 8 cut(s) 20, 29, 36, 44, 160, 231, 270, 347
FatI CATG 2 cut(s) 18, 345
FauI CCCGC 1 cut(s) 86
Fnu4HI GCNGC 2 cut(s) 330, 333
FokI GGATG 1 cut(s) 310
Fsp4HI GCNGC 2 cut(s) 330, 333
FspBI CTAG 2 cut(s) 140, 170
GlaI GCGC 1 cut(s) 373
GluI GCNGC 2 cut(s) 330, 333
HaeII RGCGCY 1 cut(s) 375
HhaI GCGC 1 cut(s) 374
Hin1II CATG 2 cut(s) 22, 349
Hin6I GCGC 1 cut(s) 372
HinP1I GCGC 1 cut(s) 372
HinfI GANTC 2 cut(s) 262, 378
HphI GGTGA 2 cut(s) 16, 379
Hpy166II GTNNAC 1 cut(s) 323
Hpy188I TCNGA 1 cut(s) 244
Hpy188III TCNNGA 1 cut(s) 346
Hpy8I GTNNAC 1 cut(s) 323
HpyAV CCTTC 3 cut(s) 24, 76, 266
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4V TGCA 1 cut(s) 22
HpyF10VI GCNNNNNNNGC 1 cut(s) 28
Hsp92II CATG 2 cut(s) 22, 349
HspAI GCGC 1 cut(s) 372
LpnPI CCDG 2 cut(s) 185, 403
Lsp1109I GCAGC 2 cut(s) 319, 341
LweI GCATC 1 cut(s) 235
MaeI CTAG 2 cut(s) 140, 170
MaeIII GTNAC 4 cut(s) 86, 97, 154, 202
MboII GAAGA 2 cut(s) 61, 158
MluCI AATT 1 cut(s) 23
MnlI CCTC 3 cut(s) 174, 177, 349
MseI TTAA 2 cut(s) 254, 351
MspA1I CMGCKG 2 cut(s) 93, 332
MwoI GCNNNNNNNGC 1 cut(s) 28
NlaIII CATG 2 cut(s) 22, 349
NmuCI GTSAC 1 cut(s) 154
PagI TCATGA 1 cut(s) 345
PfeI GAWTC 2 cut(s) 262, 378
PkrI GCNGC 2 cut(s) 331, 334
PstNI CAGNNNCTG 1 cut(s) 335
PvuII CAGCTG 1 cut(s) 332
RsaI GTAC 2 cut(s) 315, 324
RsaNI GTAC 2 cut(s) 314, 323
SaqAI TTAA 2 cut(s) 254, 351
SatI GCNGC 2 cut(s) 330, 333
SetI ASST 4 cut(s) 57, 204, 334, 412
SfaNI GCATC 1 cut(s) 235
SfcI CTRYAG 1 cut(s) 147
Sse9I AATT 1 cut(s) 23
SsiI CCGC 1 cut(s) 93
SspMI CTAG 2 cut(s) 140, 170
TaaI ACNGT 1 cut(s) 151
TaqI TCGA 2 cut(s) 182, 376
TasI AATT 1 cut(s) 23
TatI WGTACW 2 cut(s) 313, 322
TfiI GAWTC 2 cut(s) 262, 378
Tru1I TTAA 2 cut(s) 254, 351
Tru9I TTAA 2 cut(s) 254, 351
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 2 cut(s) 329, 332
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 3 cut(s) 51, 285, 334
TspGWI ACGGA 2 cut(s) 225, 402
XspI CTAG 2 cut(s) 140, 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.