Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

16394583 .. 16397204

Gene Structure 2622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGATTTCCTCTTCTCATTTTTCTTGGTTTTCTCTCTCCTTCCAACCGTAGTTTACGTTTTTCTGAGAAAGTCTAGGTGCCGGAGGCTGAGGCTGCCTCCGGGGAATCTAGGGCTACCATTTATAGGGGAGACTCTGCAGCTCATCTCAGCCTACAAGACTGAGAACCCCGAACCGTTCATCGACGAGCGCGTGAACCGGTTTGGATCCATATTCACGACTCACGTGTTCGGAGAGCCGACCGTGTTCTCCACCGACCCGGAGACCAATCGGTTCATCCTGCAGAACGAAGGGAAGCTGTTCGAGTGCAGCTACCCGGGCTCCATAACCAACCTTATGGGGAAGCACTCTTTGCTGCTGATGAAGGGCAGCCTCCATAAACGGATGCATTCTCTGACTATGAGCTTTGCAAACTCCTCCATCATTAGGGACCACCTTTTGGACGACATAAACCGGTTGATCCGGCTCAACATGGATTCATGGGCCGACCGGATCTTTCTCATGGAGGAGGCCAAAAAGATCACTTTTGAACTAGCAGTGAAGCAACTCATGAGCTTTGATCCAAATGAATGGACCGAGAGTCTAAGGAAAGAGTACGTCCTACTCGATCGAAGGCTTCTTCTCCGTTCCCTTGCCTCTATTTTCCACCACCTACCGCCGGGCCATTACTGCGCGGACAAAGGTGGCGGAGGCATTAACCTTGATAGTGAGGCAAAGGAGGGAGGAGAGCGAAGCCGGGCAGATAAAAGAGGACATGTTAGGCGCACTTTTGGGCGGAGACACCGCACTCTCCGACGAGGAGATTGTGGATTTCTTGCTTGCTTTGCTGGTGGCCGGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009555 GO:0009628 GO:0009653 GO:0009791 GO:0009908 GO:0009909 GO:0009911 GO:0009987 GO:0010208 GO:0010224 GO:0010268 GO:0010584 GO:0010817 GO:0010927 GO:0016043 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0022414 GO:0022607 GO:0030154 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0042445 GO:0042446 GO:0042592 GO:0043062 GO:0044085 GO:0044238 GO:0045229 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0055088 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0080132 GO:0085029 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1905392 GO:1905393 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

281

Amino Acids

32.19

Weight (kDa)

9.58

Isoelectric Point (pI)

54.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	78
AccB7I	CCANNNNNTGG	1 cut(s)	439
AccII	CGCG	2 cut(s)	192, 674
AciI	CCGC	5 cut(s)	656, 674, 687, 775, 784
AclWI	GGATC	5 cut(s)	201, 214, 454, 500, 554
AcoI	YGGCCR	1 cut(s)	832
AcvI	CACGTG	1 cut(s)	226
AfaI	GTAC	1 cut(s)	596
AfiI	CCNNNNNNNGG	4 cut(s)	125, 426, 439, 658
AflIII	ACRYGT	2 cut(s)	225, 754
AgeI	ACCGGT	2 cut(s)	198, 453
AgsI	TTSAA	1 cut(s)	530
AhdI	GACNNNNNGTC	1 cut(s)	579
AluBI	AGCT	5 cut(s)	142, 298, 312, 405, 555
AluI	AGCT	5 cut(s)	142, 298, 312, 405, 555
Alw26I	GTCTC	3 cut(s)	125, 257, 772
AlwI	GGATC	5 cut(s)	201, 214, 454, 500, 554
Ama87I	CYCGRG	1 cut(s)	316
AoxI	GGCC	4 cut(s)	483, 510, 661, 832
ApeKI	GCWGC	5 cut(s)	94, 139, 309, 355, 369
AsiGI	ACCGGT	2 cut(s)	198, 453
Asp700I	GAANNNNTTC	1 cut(s)	299
AspLEI	GCGC	3 cut(s)	192, 674, 765
AspS9I	GGNCC	4 cut(s)	430, 483, 573, 661
AsuC2I	CCSGG	6 cut(s)	102, 260, 317, 318, 660, 737
AvaI	CYCGRG	1 cut(s)	316
AvaII	GGWCC	2 cut(s)	430, 573
BamHI	GGATCC	1 cut(s)	206
BanI	GGYRCC	1 cut(s)	78
BanII	GRGCYC	1 cut(s)	323
BbrPI	CACGTG	1 cut(s)	226
BbvCI	CCTCAGC	1 cut(s)	89
BbvI	GCAGC	5 cut(s)	81, 151, 321, 342, 381
BccI	CCATC	1 cut(s)	428
BcnI	CCSGG	6 cut(s)	102, 260, 317, 318, 660, 737
BcoDI	GTCTC	3 cut(s)	125, 257, 772
BfaI	CTAG	3 cut(s)	75, 110, 533
BfmI	CTRYAG	2 cut(s)	137, 281
BisI	GCNGC	5 cut(s)	95, 140, 310, 356, 370
BlsI	GCNGC	5 cut(s)	96, 141, 311, 357, 371
Bme1390I	CCNGG	6 cut(s)	102, 260, 317, 318, 660, 737
Bme18I	GGWCC	2 cut(s)	430, 573
BmeRI	GACNNNNNGTC	1 cut(s)	579
BmeT110I	CYCGRG	1 cut(s)	316
BmgT120I	GGNCC	4 cut(s)	430, 483, 573, 661
BmiI	GGNNCC	4 cut(s)	80, 208, 322, 431
BmrFI	CCNGG	6 cut(s)	102, 260, 317, 318, 660, 737
BmsI	GCATC	1 cut(s)	375
BplI	GAGNNNNNCTC	2 cut(s)	82, 114
Bpu10I	CCTNAGC	1 cut(s)	89
BpuMI	CCSGG	6 cut(s)	102, 260, 317, 318, 660, 737
BsaAI	YACGTR	1 cut(s)	226
BsaI	GGTCTC	1 cut(s)	257
BsaJI	CCNNGG	2 cut(s)	101, 316
BsaWI	WCCGGW	3 cut(s)	198, 453, 489
BsaXI	ACNNNNNCTCC	2 cut(s)	305, 335
Bsc4I	CCNNNNNNNGG	4 cut(s)	125, 426, 439, 658
Bse118I	RCCGGY	3 cut(s)	198, 453, 834
BseDI	CCNNGG	2 cut(s)	101, 316
BseGI	GGATG	2 cut(s)	276, 390
BseLI	CCNNNNNNNGG	4 cut(s)	125, 426, 439, 658
BseMII	CTCAG	4 cut(s)	56, 80, 153, 162
BseRI	GAGGAG	4 cut(s)	406, 521, 738, 813
BseXI	GCAGC	5 cut(s)	81, 151, 321, 342, 381
BsgI	GTGCAG	1 cut(s)	328
Bsh1236I	CGCG	2 cut(s)	192, 674
Bsh1285I	CGRYCG	3 cut(s)	243, 490, 610
BshFI	GGCC	4 cut(s)	485, 512, 663, 834
BshNI	GGYRCC	1 cut(s)	78
BshTI	ACCGGT	2 cut(s)	198, 453
BsiEI	CGRYCG	3 cut(s)	243, 490, 610
BsiHKCI	CYCGRG	1 cut(s)	316
BslFI	GGGAC	1 cut(s)	443
BslI	CCNNNNNNNGG	4 cut(s)	125, 426, 439, 658
BsmAI	GTCTC	3 cut(s)	125, 257, 772
BsmFI	GGGAC	1 cut(s)	443
BsmI	GAATGC	1 cut(s)	388
BsnI	GGCC	4 cut(s)	485, 512, 663, 834
Bso31I	GGTCTC	1 cut(s)	257
BsoBI	CYCGRG	1 cut(s)	316
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp143I	GATC	6 cut(s)	206, 459, 492, 519, 559, 607
BspACI	CCGC	5 cut(s)	656, 674, 687, 775, 784
BspANI	GGCC	4 cut(s)	485, 512, 663, 834
BspCNI	CTCAG	4 cut(s)	57, 81, 154, 161
BspFNI	CGCG	2 cut(s)	192, 674
BspHI	TCATGA	1 cut(s)	549
BspLI	GGNNCC	4 cut(s)	80, 208, 322, 431
BspMAI	CTGCAG	2 cut(s)	141, 285
BspPI	GGATC	5 cut(s)	201, 214, 454, 500, 554
BspT107I	GGYRCC	1 cut(s)	78
BspTNI	GGTCTC	1 cut(s)	257
BsrFI	RCCGGY	3 cut(s)	198, 453, 834
BssAI	RCCGGY	3 cut(s)	198, 453, 834
BssECI	CCNNGG	2 cut(s)	101, 316
BssMI	GATC	6 cut(s)	206, 459, 492, 519, 559, 607
Bst4CI	ACNGT	3 cut(s)	49, 177, 244
Bst6I	CTCTTC	1 cut(s)	17
BstAPI	GCANNNNNTGC	1 cut(s)	352
BstBAI	YACGTR	1 cut(s)	226
BstC8I	GCNNGC	2 cut(s)	820, 836
BstDEI	CTNAG	5 cut(s)	65, 89, 148, 162, 584
BstF5I	GGATG	2 cut(s)	276, 390
BstFNI	CGCG	2 cut(s)	192, 674
BstHHI	GCGC	3 cut(s)	192, 674, 765
BstKTI	GATC	6 cut(s)	209, 462, 495, 522, 562, 610
BstMAI	GTCTC	3 cut(s)	125, 257, 772
BstMBI	GATC	6 cut(s)	206, 459, 492, 519, 559, 607
BstMCI	CGRYCG	3 cut(s)	243, 490, 610
BstMWI	GCNNNNNNNGC	5 cut(s)	94, 318, 352, 669, 824
BstNSI	RCATGY	1 cut(s)	758
BstSCI	CCNGG	6 cut(s)	100, 258, 315, 316, 658, 735
BstSFI	CTRYAG	2 cut(s)	137, 281
BstUI	CGCG	2 cut(s)	192, 674
BstV1I	GCAGC	5 cut(s)	81, 151, 321, 342, 381
BstX2I	RGATCY	2 cut(s)	206, 492
BstXI	CCANNNNNNTGG	2 cut(s)	337, 570
BstYI	RGATCY	2 cut(s)	206, 492
BsuRI	GGCC	4 cut(s)	485, 512, 663, 834
BtsCI	GGATG	2 cut(s)	276, 390
BtsI	GCAGTG	1 cut(s)	543
BtsIMutI	CAGTG	1 cut(s)	543
Cac8I	GCNNGC	2 cut(s)	820, 836
CciI	TCATGA	1 cut(s)	549
CfoI	GCGC	3 cut(s)	192, 674, 765
Cfr10I	RCCGGY	3 cut(s)	198, 453, 834
Cfr13I	GGNCC	4 cut(s)	430, 483, 573, 661
Cfr9I	CCCGGG	1 cut(s)	316
Csp6I	GTAC	1 cut(s)	595
CspAI	ACCGGT	2 cut(s)	198, 453
CviAII	CATG	5 cut(s)	472, 480, 502, 550, 755
CviQI	GTAC	1 cut(s)	595
DdeI	CTNAG	5 cut(s)	65, 89, 148, 162, 584
DpnI	GATC	6 cut(s)	208, 461, 494, 521, 561, 609
DpnII	GATC	6 cut(s)	206, 459, 492, 519, 559, 607
DriI	GACNNNNNGTC	1 cut(s)	579
EaeI	YGGCCR	1 cut(s)	832
Eam1104I	CTCTTC	1 cut(s)	17
Eam1105I	GACNNNNNGTC	1 cut(s)	579
EarI	CTCTTC	1 cut(s)	17
EciI	GGCGGA	2 cut(s)	702, 790
Eco24I	GRGCYC	1 cut(s)	323
Eco31I	GGTCTC	1 cut(s)	257
Eco47I	GGWCC	2 cut(s)	430, 573
Eco72I	CACGTG	1 cut(s)	226
Eco88I	CYCGRG	1 cut(s)	316
EcoT22I	ATGCAT	1 cut(s)	390
EcoT38I	GRGCYC	1 cut(s)	323
FaeI	CATG	5 cut(s)	475, 483, 505, 553, 758
FaqI	GGGAC	1 cut(s)	443
FatI	CATG	5 cut(s)	471, 479, 501, 549, 754
Fnu4HI	GCNGC	5 cut(s)	95, 140, 310, 356, 370
FokI	GGATG	2 cut(s)	263, 397
FriOI	GRGCYC	1 cut(s)	323
Fsp4HI	GCNGC	5 cut(s)	95, 140, 310, 356, 370
FspBI	CTAG	3 cut(s)	75, 110, 533
GlaI	GCGC	3 cut(s)	191, 673, 764
GluI	GCNGC	5 cut(s)	95, 140, 310, 356, 370
HaeIII	GGCC	4 cut(s)	485, 512, 663, 834
HhaI	GCGC	3 cut(s)	192, 674, 765
Hin1II	CATG	5 cut(s)	475, 483, 505, 553, 758
Hin6I	GCGC	3 cut(s)	190, 672, 763
HinP1I	GCGC	3 cut(s)	190, 672, 763
HinfI	GANTC	5 cut(s)	106, 133, 220, 476, 580
Hpy166II	GTNNAC	2 cut(s)	55, 196
Hpy188I	TCNGA	4 cut(s)	66, 233, 396, 794
Hpy188III	TCNNGA	2 cut(s)	217, 550
Hpy8I	GTNNAC	2 cut(s)	55, 196
Hpy99I	CGWCG	2 cut(s)	188, 798
HpyAV	CCTTC	4 cut(s)	50, 284, 358, 606
HpyCH4III	ACNGT	3 cut(s)	49, 177, 244
HpyCH4IV	ACGT	3 cut(s)	57, 225, 597
HpyCH4V	TGCA	5 cut(s)	139, 283, 309, 388, 410
HpyF10VI	GCNNNNNNNGC	5 cut(s)	94, 318, 352, 669, 824
HpyF3I	CTNAG	5 cut(s)	65, 89, 148, 162, 584
HpySE526I	ACGT	3 cut(s)	57, 225, 597
Hsp92II	CATG	5 cut(s)	475, 483, 505, 553, 758
HspAI	GCGC	3 cut(s)	190, 672, 763
KroI	GCCGGC	1 cut(s)	834
KroNI	GCCGGC	1 cut(s)	836
Kzo9I	GATC	6 cut(s)	206, 459, 492, 519, 559, 607
LmnI	GCTCC	1 cut(s)	326
Lsp1109I	GCAGC	5 cut(s)	81, 151, 321, 342, 381
LweI	GCATC	1 cut(s)	375
MaeI	CTAG	3 cut(s)	75, 110, 533
MaeII	ACGT	3 cut(s)	57, 225, 597
MalI	GATC	6 cut(s)	208, 461, 494, 521, 561, 609
MboI	GATC	6 cut(s)	206, 459, 492, 519, 559, 607
MboII	GAAGA	2 cut(s)	4, 611
MflI	RGATCY	2 cut(s)	206, 492
MhlI	GDGCHC	1 cut(s)	323
MlyI	GAGTC	3 cut(s)	127, 214, 589
MmeI	TCCRAC	2 cut(s)	68, 817
Mph1103I	ATGCAT	1 cut(s)	390
MroNI	GCCGGC	1 cut(s)	834
MroXI	GAANNNNTTC	1 cut(s)	299
MseI	TTAA	1 cut(s)	696
MspR9I	CCNGG	6 cut(s)	102, 260, 317, 318, 660, 737
Mva1269I	GAATGC	1 cut(s)	388
MvnI	CGCG	2 cut(s)	192, 674
MwoI	GCNNNNNNNGC	5 cut(s)	94, 318, 352, 669, 824
NaeI	GCCGGC	1 cut(s)	836
NciI	CCSGG	6 cut(s)	102, 260, 317, 318, 660, 737
NdeII	GATC	6 cut(s)	206, 459, 492, 519, 559, 607
NgoMIV	GCCGGC	1 cut(s)	834
NlaIII	CATG	5 cut(s)	475, 483, 505, 553, 758
NlaIV	GGNNCC	4 cut(s)	80, 208, 322, 431
NsiI	ATGCAT	1 cut(s)	390
NspI	RCATGY	1 cut(s)	758
PagI	TCATGA	1 cut(s)	549
PciI	ACATGT	1 cut(s)	754
PcsI	WCGNNNNNNNCGW	2 cut(s)	189, 603
PctI	GAATGC	1 cut(s)	388
PdiI	GCCGGC	1 cut(s)	836
PdmI	GAANNNNTTC	1 cut(s)	299
PfeI	GAWTC	2 cut(s)	106, 476
PflMI	CCANNNNNTGG	1 cut(s)	439
PinAI	ACCGGT	2 cut(s)	198, 453
PkrI	GCNGC	5 cut(s)	96, 141, 311, 357, 371
Ple19I	CGATCG	1 cut(s)	610
PleI	GAGTC	3 cut(s)	127, 214, 588
PmaCI	CACGTG	1 cut(s)	226
PmlI	CACGTG	1 cut(s)	226
PpsI	GAGTC	3 cut(s)	127, 214, 588
Ppu21I	YACGTR	1 cut(s)	226
PscI	ACATGT	1 cut(s)	754
PspCI	CACGTG	1 cut(s)	226
PspN4I	GGNNCC	4 cut(s)	80, 208, 322, 431
PspPI	GGNCC	4 cut(s)	430, 483, 573, 661
PstI	CTGCAG	2 cut(s)	141, 285
PsuI	RGATCY	2 cut(s)	206, 492
PvuI	CGATCG	1 cut(s)	610
RsaI	GTAC	1 cut(s)	596
RsaNI	GTAC	1 cut(s)	595
SaqAI	TTAA	1 cut(s)	696
SatI	GCNGC	5 cut(s)	95, 140, 310, 356, 370
Sau3AI	GATC	6 cut(s)	206, 459, 492, 519, 559, 607
Sau96I	GGNCC	4 cut(s)	430, 483, 573, 661
SchI	GAGTC	3 cut(s)	127, 214, 589
ScrFI	CCNGG	6 cut(s)	102, 260, 317, 318, 660, 737
SduI	GDGCHC	1 cut(s)	323
SfaNI	GCATC	1 cut(s)	375
SfcI	CTRYAG	2 cut(s)	137, 281
SinI	GGWCC	2 cut(s)	430, 573
SmaI	CCCGGG	1 cut(s)	318
SsiI	CCGC	5 cut(s)	656, 674, 687, 775, 784
SspMI	CTAG	3 cut(s)	75, 110, 533
StyD4I	CCNGG	6 cut(s)	100, 258, 315, 316, 658, 735
TaaI	ACNGT	3 cut(s)	49, 177, 244
TaiI	ACGT	3 cut(s)	60, 228, 600
TaqI	TCGA	4 cut(s)	183, 303, 606, 610
TaqII	GACCGA	1 cut(s)	590
TfiI	GAWTC	2 cut(s)	106, 476
Tru1I	TTAA	1 cut(s)	696
Tru9I	TTAA	1 cut(s)	696
TscAI	CASTG	1 cut(s)	543
TseI	GCWGC	5 cut(s)	94, 139, 309, 355, 369
TspDTI	ATGAA	5 cut(s)	169, 265, 377, 468, 582
TspGWI	ACGGA	2 cut(s)	397, 614
TspMI	CCCGGG	1 cut(s)	316
TspRI	CASTG	1 cut(s)	543
Van91I	CCANNNNNTGG	1 cut(s)	439
VpaK11BI	GGWCC	2 cut(s)	430, 573
XceI	RCATGY	1 cut(s)	758
XmaI	CCCGGG	1 cut(s)	316
XmnI	GAANNNNTTC	1 cut(s)	299
XspI	CTAG	3 cut(s)	75, 110, 533
Zsp2I	ATGCAT	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.