Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

16398662 .. 16399424

Gene Structure 763 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGACAGATGTTCACATTAAAGGATACACGATCCCTAAAGGTTGGAAGGTATTTGCATCGTTCCGTGCTGTACATCTTGATCAAGATCATTTCAAGGACGCTCGAACTTTTAATCCATGGAGGTGGCAGAACAACTCTGGACCGGTCACAAGCCCAGCAAATGTGTTCACACCATTCGGAGGAGGGCCAAGGCTGTGCCCAGGCTATGAGCTTGCCAGAGTAGAAATCTCGGTCTTCCTTCACCACTTAGTCACTCGTTTCAGTTGGGTTCCTGATGAGGAAGATAAGCTGGTGTTTTTTCCGACGACGAGGACGCAGAAGAGGTACCCGATCAATGTGCAGCGGAGGAACAATGTGTCATATGGGCAATGTAAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009555 GO:0009628 GO:0009653 GO:0009791 GO:0009908 GO:0009909 GO:0009911 GO:0009987 GO:0010208 GO:0010224 GO:0010268 GO:0010584 GO:0010817 GO:0010927 GO:0016043 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0022414 GO:0022607 GO:0030154 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0042445 GO:0042446 GO:0042592 GO:0043062 GO:0044085 GO:0044238 GO:0045229 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0055088 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0080132 GO:0085029 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1905392 GO:1905393 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

127

Amino Acids

14.68

Weight (kDa)

9.64

Isoelectric Point (pI)

35.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 98	2.4e-28	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	324
AccB1I	GGYRCC	1 cut(s)	324
AciI	CCGC	1 cut(s)	343
AclWI	GGATC	1 cut(s)	25
AfaI	GTAC	2 cut(s)	72, 326
AfiI	CCNNNNNNNGG	1 cut(s)	179
AgeI	ACCGGT	1 cut(s)	142
AgsI	TTSAA	1 cut(s)	94
AjnI	CCWGG	1 cut(s)	199
AloI	GAACNNNNNNTCC	2 cut(s)	97, 129
AluBI	AGCT	2 cut(s)	211, 289
AluI	AGCT	2 cut(s)	211, 289
AlwI	GGATC	1 cut(s)	25
AoxI	GGCC	1 cut(s)	185
ApeKI	GCWGC	1 cut(s)	340
AsiGI	ACCGGT	1 cut(s)	142
Asp718I	GGTACC	1 cut(s)	324
AspS9I	GGNCC	2 cut(s)	140, 185
AsuHPI	GGTGA	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	140
BaeGI	GKGCMC	1 cut(s)	200
BanI	GGYRCC	1 cut(s)	324
BbsI	GAAGAC	1 cut(s)	226
BbvI	GCAGC	1 cut(s)	352
BcgI	CGANNNNNNTGC	2 cut(s)	319, 353
BciT130I	CCWGG	1 cut(s)	201
BciVI	GTATCC	1 cut(s)	17
BclI	TGATCA	1 cut(s)	79
BfuI	GTATCC	1 cut(s)	17
BisI	GCNGC	1 cut(s)	341
BlsI	GCNGC	1 cut(s)	342
Bme1390I	CCNGG	1 cut(s)	201
Bme18I	GGWCC	1 cut(s)	140
BmgT120I	GGNCC	2 cut(s)	140, 185
BmiI	GGNNCC	2 cut(s)	270, 326
BmrFI	CCNGG	1 cut(s)	201
BmsI	GCATC	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	226
BsaBI	GATNNNNATC	1 cut(s)	84
BsaJI	CCNNGG	3 cut(s)	116, 188, 199
BsaWI	WCCGGW	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse118I	RCCGGY	1 cut(s)	142
Bse3DI	GCAATG	1 cut(s)	374
Bse8I	GATNNNNATC	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	201
BseDI	CCNNGG	3 cut(s)	116, 188, 199
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseMI	GCAATG	1 cut(s)	374
BseRI	GAGGAG	1 cut(s)	195
BseSI	GKGCMC	1 cut(s)	200
BseXI	GCAGC	1 cut(s)	352
BseYI	CCCAGC	1 cut(s)	154
BsgI	GTGCAG	1 cut(s)	359
BshFI	GGCC	1 cut(s)	187
BshNI	GGYRCC	1 cut(s)	324
BshTI	ACCGGT	1 cut(s)	142
BsiSI	CCGG	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	179
BsnI	GGCC	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	200
Bsp1407I	TGTACA	1 cut(s)	70
Bsp143I	GATC	4 cut(s)	30, 79, 85, 330
Bsp19I	CCATGG	1 cut(s)	116
BspACI	CCGC	1 cut(s)	343
BspANI	GGCC	1 cut(s)	187
BspLI	GGNNCC	2 cut(s)	270, 326
BspPI	GGATC	1 cut(s)	25
BspT107I	GGYRCC	1 cut(s)	324
BsrDI	GCAATG	1 cut(s)	374
BsrFI	RCCGGY	1 cut(s)	142
BsrGI	TGTACA	1 cut(s)	70
BssAI	RCCGGY	1 cut(s)	142
BssECI	CCNNGG	3 cut(s)	116, 188, 199
BssMI	GATC	4 cut(s)	30, 79, 85, 330
BssT1I	CCWWGG	2 cut(s)	116, 188
Bst2UI	CCWGG	1 cut(s)	201
Bst6I	CTCTTC	1 cut(s)	314
BstAUI	TGTACA	1 cut(s)	70
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	1 cut(s)	247
BstDSI	CCRYGG	1 cut(s)	116
BstKTI	GATC	4 cut(s)	33, 82, 88, 333
BstMBI	GATC	4 cut(s)	30, 79, 85, 330
BstNI	CCWGG	1 cut(s)	201
BstSCI	CCNGG	1 cut(s)	199
BstSLI	GKGCMC	1 cut(s)	200
BstV1I	GCAGC	1 cut(s)	352
BstV2I	GAAGAC	1 cut(s)	226
BstXI	CCANNNNNNTGG	1 cut(s)	123
BsuI	GTATCC	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	187
BtgI	CCRYGG	1 cut(s)	116
Cac8I	GCNNGC	1 cut(s)	213
Cfr10I	RCCGGY	1 cut(s)	142
Cfr13I	GGNCC	2 cut(s)	140, 185
CseI	GACGC	2 cut(s)	107, 322
Csp6I	GTAC	2 cut(s)	71, 325
CspAI	ACCGGT	1 cut(s)	142
CviAII	CATG	1 cut(s)	117
CviJI	RGCY	6 cut(s)	153, 187, 193, 204, 211, 289
CviKI_1	RGCY	6 cut(s)	153, 187, 193, 204, 211, 289
CviQI	GTAC	2 cut(s)	71, 325
DdeI	CTNAG	1 cut(s)	247
DpnI	GATC	4 cut(s)	32, 81, 87, 332
DpnII	GATC	4 cut(s)	30, 79, 85, 330
Eam1104I	CTCTTC	1 cut(s)	314
EarI	CTCTTC	1 cut(s)	314
Eco130I	CCWWGG	2 cut(s)	116, 188
Eco47I	GGWCC	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	199
EcoT14I	CCWWGG	2 cut(s)	116, 188
ErhI	CCWWGG	2 cut(s)	116, 188
FaeI	CATG	1 cut(s)	120
FaiI	YATR	4 cut(s)	118, 207, 361, 363
FatI	CATG	1 cut(s)	116
FauNDI	CATATG	1 cut(s)	361
FbaI	TGATCA	1 cut(s)	79
Fnu4HI	GCNGC	1 cut(s)	341
Fsp4HI	GCNGC	1 cut(s)	341
GluI	GCNGC	1 cut(s)	341
GsaI	CCCAGC	1 cut(s)	158
HaeIII	GGCC	1 cut(s)	187
HapII	CCGG	1 cut(s)	143
HgaI	GACGC	2 cut(s)	107, 322
Hin1II	CATG	1 cut(s)	120
HpaII	CCGG	1 cut(s)	143
HphI	GGTGA	1 cut(s)	233
Hpy166II	GTNNAC	2 cut(s)	13, 168
Hpy188I	TCNGA	2 cut(s)	179, 303
Hpy188III	TCNNGA	4 cut(s)	77, 83, 138, 272
Hpy8I	GTNNAC	2 cut(s)	13, 168
Hpy99I	CGWCG	2 cut(s)	307, 310
HpyAV	CCTTC	2 cut(s)	40, 248
HpyCH4V	TGCA	2 cut(s)	56, 340
HpyF3I	CTNAG	1 cut(s)	247
Hsp92II	CATG	1 cut(s)	120
KpnI	GGTACC	1 cut(s)	328
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	4 cut(s)	30, 79, 85, 330
LpnPI	CCDG	8 cut(s)	123, 156, 168, 186, 213, 229, 275, 285
Lsp1109I	GCAGC	1 cut(s)	352
LweI	GCATC	1 cut(s)	65
MaeIII	GTNAC	2 cut(s)	145, 250
MalI	GATC	4 cut(s)	32, 81, 87, 332
MboI	GATC	4 cut(s)	30, 79, 85, 330
MboII	GAAGA	3 cut(s)	226, 293, 331
MhlI	GDGCHC	1 cut(s)	200
MmeI	TCCRAC	2 cut(s)	23, 326
MnlI	CCTC	7 cut(s)	114, 173, 176, 271, 303, 315, 339
MseI	TTAA	2 cut(s)	18, 111
MslI	CAYNNNNRTG	1 cut(s)	121
MspA1I	CMGCKG	1 cut(s)	343
MspI	CCGG	1 cut(s)	143
MspR9I	CCNGG	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	201
NcoI	CCATGG	1 cut(s)	116
NdeI	CATATG	1 cut(s)	361
NdeII	GATC	4 cut(s)	30, 79, 85, 330
NlaIII	CATG	1 cut(s)	120
NlaIV	GGNNCC	2 cut(s)	270, 326
NmuCI	GTSAC	2 cut(s)	145, 250
PinAI	ACCGGT	1 cut(s)	142
PkrI	GCNGC	1 cut(s)	342
Psp6I	CCWGG	1 cut(s)	199
PspFI	CCCAGC	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	199
PspN4I	GGNNCC	2 cut(s)	270, 326
PspPI	GGNCC	2 cut(s)	140, 185
RsaI	GTAC	2 cut(s)	72, 326
RsaNI	GTAC	2 cut(s)	71, 325
RseI	CAYNNNNRTG	1 cut(s)	121
SaqAI	TTAA	2 cut(s)	18, 111
SatI	GCNGC	1 cut(s)	341
Sau3AI	GATC	4 cut(s)	30, 79, 85, 330
Sau96I	GGNCC	2 cut(s)	140, 185
ScrFI	CCNGG	1 cut(s)	201
SduI	GDGCHC	1 cut(s)	200
SetI	ASST	6 cut(s)	43, 51, 125, 213, 291, 326
SfaNI	GCATC	1 cut(s)	65
SinI	GGWCC	1 cut(s)	140
SmiMI	CAYNNNNRTG	1 cut(s)	121
SsiI	CCGC	1 cut(s)	343
StyD4I	CCNGG	1 cut(s)	199
StyI	CCWWGG	2 cut(s)	116, 188
TaqI	TCGA	1 cut(s)	103
TaqII	GACCGA	1 cut(s)	220
TatI	WGTACW	1 cut(s)	70
Tru1I	TTAA	2 cut(s)	18, 111
Tru9I	TTAA	2 cut(s)	18, 111
TseFI	GTSAC	2 cut(s)	145, 250
TseI	GCWGC	1 cut(s)	340
Tsp45I	GTSAC	2 cut(s)	145, 250
TspGWI	ACGGA	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.