Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

16649842 .. 16652532

Gene Structure 2691 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGTGCTGAATGTTAAAAAGCCTATAACATTTATAGACCAATTTGGTAAACAACACAGTGTCTCTGGTGGAAGGCTTGAATGCACAATGCAAAATATTGCTGACAGCTTTCTTAATACATGTCCATCTCGATATTATAAGGGTATTGAAGATAAGCTTGATGCATTCATTGTTTATAATGAACGAAGGAGGGTCACATCATCTGCTAAGAGAAAAAGAAGACATGCAGAGAAATCTTTACACCAAATTCCTGATGGTTCACTGTTGGATATCCATATCCTACGGAATGCCCATGATCTTCTCTCACAATGTGATATTGAACTTCCTGAGATTGAAAGTAATGAAAAATATCAAAGTTCTGGACCCCCATTTCTTATTCTTCTGCACCCTGCTCTTGGCCCACTTTGGGAGGTCACCAGACAAAAATTCTATGGAGGCTCAATATCCGAGGGCTCTGAGTTACAAGTAGAGGTTGCAGAGTTCCTGTGGAGGAATGTTCAGCTTGATGGAAGCCTGATCGTAGAGGCTGACAACGTTATGGGCTCAACTAGGATTGATCAAAGTGGCGAACCCATTTTACAATACGGGCACAGGTGTGGAAGATGTAAATTACAGAATGTAAAAGTGCTAAATGATGGAATTGACTGGAATTTTGAAGACAATGTGTACTGGAAGCATGATGTTAAACGCATTGAGGCATGTAAGATCATACTGCATGGAAATGCTGAATTTGAGGCAACTGATGTTACATTACAGGGAAATTGTATATTTGAAGTTCCAAATGGCTACAAAATGAAGATCACAGCGGGAGATTCAGGTTTCGACTCCCGACTTGAACCTATTGAACAGAACATGATGGATGGTGGAAGCTGGCATTGGGAGTACAGGTTAAGGGGCGCACATATTCAGTTGGAAGTGGTAGAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003983 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006011 GO:0006082 GO:0006139 GO:0006629 GO:0006725 GO:0006790 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009225 GO:0009226 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046505 GO:0046506 GO:0051748 GO:0055086 GO:0070569 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGP

Protein Analysis

310

Amino Acids

35.26

Weight (kDa)

5.69

Isoelectric Point (pI)

58.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hexapep_UGP3_C	PF25441	143 - 306	3.9e-79	UGP3-like, C-terminal hexapeptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	138, 177
AciI	CCGC	1 cut(s)	806
AclI	AACGTT	1 cut(s)	534
AcsI	RAATTY	4 cut(s)	246, 425, 649, 728
AdeI	CACNNNGTG	1 cut(s)	311
AfaI	GTAC	2 cut(s)	668, 884
AfiI	CCNNNNNNNGG	2 cut(s)	395, 406
AflIII	ACRYGT	1 cut(s)	119
AgsI	TTSAA	8 cut(s)	80, 149, 320, 335, 656, 773, 836, 845
AjuI	GAANNNNNNNTTGG	2 cut(s)	859, 891
AleI	CACNNNNGTG	1 cut(s)	594
AluBI	AGCT	4 cut(s)	108, 157, 502, 870
AluI	AGCT	4 cut(s)	108, 157, 502, 870
Alw26I	GTCTC	1 cut(s)	67
AoxI	GGCC	1 cut(s)	397
ApoI	RAATTY	4 cut(s)	246, 425, 649, 728
ArsI	GACNNNNNNTTYG	2 cut(s)	635, 667
AspLEI	GCGC	1 cut(s)	899
AspS9I	GGNCC	2 cut(s)	362, 398
AsuHPI	GGTGA	1 cut(s)	406
AvaII	GGWCC	1 cut(s)	362
BaeGI	GKGCMC	1 cut(s)	591
BanII	GRGCYC	2 cut(s)	455, 545
BbsI	GAAGAC	2 cut(s)	226, 663
BccI	CCATC	6 cut(s)	133, 248, 500, 629, 850, 854
BclI	TGATCA	1 cut(s)	556
BcoDI	GTCTC	1 cut(s)	67
BfaI	CTAG	1 cut(s)	549
Bme18I	GGWCC	1 cut(s)	362
BmgT120I	GGNCC	2 cut(s)	362, 398
BmiI	GGNNCC	1 cut(s)	364
BmsI	GCATC	1 cut(s)	151
BpiI	GAAGAC	2 cut(s)	226, 663
BsaJI	CCNNGG	1 cut(s)	447
BsaXI	ACNNNNNCTCC	2 cut(s)	872, 902
Bsc4I	CCNNNNNNNGG	2 cut(s)	395, 406
Bse1I	ACTGG	2 cut(s)	650, 674
BseDI	CCNNGG	1 cut(s)	447
BseGI	GGATG	1 cut(s)	865
BseLI	CCNNNNNNNGG	2 cut(s)	395, 406
BseMII	CTCAG	2 cut(s)	318, 447
BseNI	ACTGG	2 cut(s)	650, 674
BseSI	GKGCMC	1 cut(s)	591
BsgI	GTGCAG	1 cut(s)	368
BshFI	GGCC	1 cut(s)	399
BslI	CCNNNNNNNGG	2 cut(s)	395, 406
BsmAI	GTCTC	1 cut(s)	67
BsmI	GAATGC	3 cut(s)	86, 164, 292
BsnI	GGCC	1 cut(s)	399
Bsp1286I	GDGCHC	3 cut(s)	455, 545, 591
Bsp143I	GATC	5 cut(s)	295, 516, 556, 705, 798
BspACI	CCGC	1 cut(s)	806
BspANI	GGCC	1 cut(s)	399
BspCNI	CTCAG	2 cut(s)	319, 448
BspLI	GGNNCC	1 cut(s)	364
BsrI	ACTGG	2 cut(s)	650, 674
BssECI	CCNNGG	1 cut(s)	447
BssMI	GATC	5 cut(s)	295, 516, 556, 705, 798
Bst4CI	ACNGT	2 cut(s)	59, 264
BstC8I	GCNNGC	1 cut(s)	872
BstDEI	CTNAG	3 cut(s)	207, 327, 456
BstEII	GGTNACC	1 cut(s)	412
BstF5I	GGATG	1 cut(s)	865
BstHHI	GCGC	1 cut(s)	899
BstKTI	GATC	5 cut(s)	298, 519, 559, 708, 801
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	5 cut(s)	295, 516, 556, 705, 798
BstNSI	RCATGY	3 cut(s)	123, 227, 702
BstPI	GGTNACC	1 cut(s)	412
BstSLI	GKGCMC	1 cut(s)	591
BstV2I	GAAGAC	2 cut(s)	226, 663
BsuRI	GGCC	1 cut(s)	399
BtsCI	GGATG	1 cut(s)	865
BtsIMutI	CAGTG	2 cut(s)	64, 260
Cac8I	GCNNGC	1 cut(s)	872
CfoI	GCGC	1 cut(s)	899
Cfr13I	GGNCC	2 cut(s)	362, 398
Csp6I	GTAC	2 cut(s)	667, 883
CviAII	CATG	7 cut(s)	120, 224, 293, 677, 699, 716, 853
CviQI	GTAC	2 cut(s)	667, 883
DdeI	CTNAG	3 cut(s)	207, 327, 456
DpnI	GATC	5 cut(s)	297, 518, 558, 707, 800
DpnII	GATC	5 cut(s)	295, 516, 556, 705, 798
DraIII	CACNNNGTG	1 cut(s)	311
Eco24I	GRGCYC	2 cut(s)	455, 545
Eco32I	GATATC	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	362
Eco91I	GGTNACC	1 cut(s)	412
EcoO65I	GGTNACC	1 cut(s)	412
EcoRV	GATATC	1 cut(s)	271
EcoT22I	ATGCAT	1 cut(s)	166
EcoT38I	GRGCYC	2 cut(s)	455, 545
FaeI	CATG	7 cut(s)	123, 227, 296, 680, 702, 719, 856
FalI	AAGNNNNNCTT	2 cut(s)	141, 173
FatI	CATG	7 cut(s)	119, 223, 292, 676, 698, 715, 852
FauI	CCCGC	1 cut(s)	799
FbaI	TGATCA	1 cut(s)	556
FokI	GGATG	1 cut(s)	872
FriOI	GRGCYC	2 cut(s)	455, 545
FspBI	CTAG	1 cut(s)	549
GlaI	GCGC	1 cut(s)	898
HaeIII	GGCC	1 cut(s)	399
HhaI	GCGC	1 cut(s)	899
Hin1II	CATG	7 cut(s)	123, 227, 296, 680, 702, 719, 856
Hin6I	GCGC	1 cut(s)	897
HinP1I	GCGC	1 cut(s)	897
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	2 cut(s)	812, 824
HphI	GGTGA	1 cut(s)	406
Hpy166II	GTNNAC	3 cut(s)	50, 260, 667
Hpy188I	TCNGA	2 cut(s)	448, 457
Hpy188III	TCNNGA	5 cut(s)	129, 251, 326, 360, 828
Hpy8I	GTNNAC	3 cut(s)	50, 260, 667
HpyAV	CCTTC	2 cut(s)	66, 180
HpyCH4III	ACNGT	2 cut(s)	59, 264
HpyCH4IV	ACGT	1 cut(s)	534
HpyCH4V	TGCA	7 cut(s)	84, 91, 164, 227, 385, 476, 715
HpyF3I	CTNAG	3 cut(s)	207, 327, 456
HpySE526I	ACGT	1 cut(s)	534
Hsp92II	CATG	7 cut(s)	123, 227, 296, 680, 702, 719, 856
HspAI	GCGC	1 cut(s)	897
Ksp22I	TGATCA	1 cut(s)	556
Kzo9I	GATC	5 cut(s)	295, 516, 556, 705, 798
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	1 cut(s)	549
MaeII	ACGT	1 cut(s)	534
MaeIII	GTNAC	4 cut(s)	193, 412, 459, 745
MalI	GATC	5 cut(s)	297, 518, 558, 707, 800
MboI	GATC	5 cut(s)	295, 516, 556, 705, 798
MboII	GAAGA	7 cut(s)	161, 231, 290, 371, 612, 668, 808
MhlI	GDGCHC	3 cut(s)	455, 545, 591
MluCI	AATT	8 cut(s)	41, 246, 425, 608, 639, 649, 728, 760
MlyI	GAGTC	1 cut(s)	818
MmeI	TCCRAC	2 cut(s)	246, 891
MnlI	CCTC	9 cut(s)	183, 403, 428, 442, 463, 483, 517, 688, 727
Mph1103I	ATGCAT	1 cut(s)	166
MseI	TTAA	4 cut(s)	15, 114, 684, 890
MslI	CAYNNNNRTG	2 cut(s)	594, 720
MspA1I	CMGCKG	1 cut(s)	806
Mva1269I	GAATGC	3 cut(s)	86, 164, 292
NdeII	GATC	5 cut(s)	295, 516, 556, 705, 798
NlaIII	CATG	7 cut(s)	123, 227, 296, 680, 702, 719, 856
NlaIV	GGNNCC	1 cut(s)	364
NmuCI	GTSAC	2 cut(s)	193, 412
NsiI	ATGCAT	1 cut(s)	166
NspI	RCATGY	3 cut(s)	123, 227, 702
OliI	CACNNNNGTG	1 cut(s)	594
PciI	ACATGT	1 cut(s)	119
PctI	GAATGC	3 cut(s)	86, 164, 292
PfeI	GAWTC	1 cut(s)	812
PleI	GAGTC	1 cut(s)	818
PpsI	GAGTC	1 cut(s)	818
PscI	ACATGT	1 cut(s)	119
PsiI	TTATAA	2 cut(s)	138, 177
Psp1406I	AACGTT	1 cut(s)	534
PspEI	GGTNACC	1 cut(s)	412
PspN4I	GGNNCC	1 cut(s)	364
PspPI	GGNCC	2 cut(s)	362, 398
PsrI	GAACNNNNNNTAC	2 cut(s)	561, 593
RsaI	GTAC	2 cut(s)	668, 884
RsaNI	GTAC	2 cut(s)	667, 883
RseI	CAYNNNNRTG	2 cut(s)	594, 720
SaqAI	TTAA	4 cut(s)	15, 114, 684, 890
Sau3AI	GATC	5 cut(s)	295, 516, 556, 705, 798
Sau96I	GGNCC	2 cut(s)	362, 398
SchI	GAGTC	1 cut(s)	818
SduI	GDGCHC	3 cut(s)	455, 545, 591
SfaNI	GCATC	1 cut(s)	151
SinI	GGWCC	1 cut(s)	362
SmiMI	CAYNNNNRTG	2 cut(s)	594, 720
Sse9I	AATT	8 cut(s)	41, 246, 425, 608, 639, 649, 728, 760
SsiI	CCGC	1 cut(s)	806
SspI	AATATT	1 cut(s)	97
SspMI	CTAG	1 cut(s)	549
TaaI	ACNGT	2 cut(s)	59, 264
TaiI	ACGT	1 cut(s)	537
TaqI	TCGA	2 cut(s)	130, 822
TasI	AATT	8 cut(s)	41, 246, 425, 608, 639, 649, 728, 760
TatI	WGTACW	2 cut(s)	666, 882
TfiI	GAWTC	1 cut(s)	812
Tru1I	TTAA	4 cut(s)	15, 114, 684, 890
Tru9I	TTAA	4 cut(s)	15, 114, 684, 890
TscAI	CASTG	2 cut(s)	64, 267
TseFI	GTSAC	2 cut(s)	193, 412
Tsp45I	GTSAC	2 cut(s)	193, 412
TspDTI	ATGAA	4 cut(s)	157, 195, 357, 809
TspGWI	ACGGA	1 cut(s)	298
TspRI	CASTG	2 cut(s)	64, 267
VpaK11BI	GGWCC	1 cut(s)	362
XapI	RAATTY	4 cut(s)	246, 425, 649, 728
XceI	RCATGY	3 cut(s)	123, 227, 702
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XspI	CTAG	1 cut(s)	549
Zsp2I	ATGCAT	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.