pycom01g17590

Sorting nexin

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Forward (+)
16826862 .. 16828466
1605 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 255 bp
ATGCGGAAAATAGAGGAGCTTAAAGAAACTTTAAAGATTAGTGAGGATGCTAAATCTTGTGCAGTCAGAGAGTATGAACGCATCAAGGAAAATAACAGGAGTGAGCTAGAAAGGCTTGACAGAGAGAGGCACGAGGACTTCATGGGCATGCTGAGAGGATTTGTTCTTAACCAGGCTGGATACGCGGAAAAGATGGCGAATGCTTGGGAGAAGCTTGCGGAAGAAACAAGCGGGTATGCGAATGATGCTAGCTGA

Protein Analysis

85

Amino Acids

9.83

Weight (kDa)

5.1

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 185
AciI CCGC 4 cut(s) 4, 185, 218, 231
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 4 cut(s) 19, 106, 214, 252
AluI AGCT 4 cut(s) 19, 106, 214, 252
AsuNHI GCTAGC 1 cut(s) 248
BauI CACGAG 1 cut(s) 131
BccI CCATC 1 cut(s) 187
BciT130I CCWGG 1 cut(s) 173
BciVI GTATCC 1 cut(s) 173
BfaI CTAG 2 cut(s) 107, 249
BfuI GTATCC 1 cut(s) 173
Bme1390I CCNGG 1 cut(s) 173
BmrFI CCNGG 1 cut(s) 173
BmsI GCATC 3 cut(s) 37, 90, 235
BmtI GCTAGC 1 cut(s) 252
BseBI CCWGG 1 cut(s) 173
BseGI GGATG 1 cut(s) 52
BseMII CTCAG 1 cut(s) 143
BseRI GAGGAG 1 cut(s) 29
BsgI GTGCAG 1 cut(s) 81
Bsh1236I CGCG 1 cut(s) 185
BsmI GAATGC 1 cut(s) 205
BspACI CCGC 4 cut(s) 4, 185, 218, 231
BspCNI CTCAG 1 cut(s) 144
BspFNI CGCG 1 cut(s) 185
BspOI GCTAGC 1 cut(s) 252
BssSI CACGAG 1 cut(s) 131
Bst2BI CACGAG 1 cut(s) 131
Bst2UI CCWGG 1 cut(s) 173
BstC8I GCNNGC 3 cut(s) 149, 216, 250
BstDEI CTNAG 1 cut(s) 152
BstF5I GGATG 1 cut(s) 52
BstFNI CGCG 1 cut(s) 185
BstMWI GCNNNNNNNGC 3 cut(s) 112, 182, 245
BstNI CCWGG 1 cut(s) 173
BstNSI RCATGY 1 cut(s) 151
BstSCI CCNGG 1 cut(s) 171
BstUI CGCG 1 cut(s) 185
BsuI GTATCC 1 cut(s) 173
BtsCI GGATG 1 cut(s) 52
Cac8I GCNNGC 3 cut(s) 149, 216, 250
CviAII CATG 2 cut(s) 142, 148
CviJI RGCY 6 cut(s) 19, 106, 115, 176, 214, 252
CviKI_1 RGCY 6 cut(s) 19, 106, 115, 176, 214, 252
DdeI CTNAG 1 cut(s) 152
DraI TTTAAA 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 171
FaeI CATG 2 cut(s) 145, 151
FaiI YATR 4 cut(s) 75, 143, 149, 237
FatI CATG 2 cut(s) 141, 147
FauI CCCGC 1 cut(s) 224
FokI GGATG 1 cut(s) 59
FspBI CTAG 2 cut(s) 107, 249
Hin1II CATG 2 cut(s) 145, 151
HindIII AAGCTT 1 cut(s) 212
Hpy188I TCNGA 1 cut(s) 68
HpyCH4V TGCA 1 cut(s) 62
HpyF10VI GCNNNNNNNGC 3 cut(s) 112, 182, 245
HpyF3I CTNAG 1 cut(s) 152
Hsp92II CATG 2 cut(s) 145, 151
LmnI GCTCC 1 cut(s) 16
LpnPI CCDG 4 cut(s) 82, 158, 162, 185
LweI GCATC 3 cut(s) 37, 90, 235
MaeI CTAG 2 cut(s) 107, 249
MboII GAAGA 1 cut(s) 233
MnlI CCTC 5 cut(s) 7, 37, 120, 127, 149
MseI TTAA 3 cut(s) 21, 32, 168
MslI CAYNNNNRTG 1 cut(s) 146
MspR9I CCNGG 1 cut(s) 173
Mva1269I GAATGC 1 cut(s) 205
MvaI CCWGG 1 cut(s) 173
MvnI CGCG 1 cut(s) 185
MwoI GCNNNNNNNGC 3 cut(s) 112, 182, 245
NheI GCTAGC 1 cut(s) 248
NlaIII CATG 2 cut(s) 145, 151
NspI RCATGY 1 cut(s) 151
PaeI GCATGC 1 cut(s) 151
PctI GAATGC 1 cut(s) 205
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
RseI CAYNNNNRTG 1 cut(s) 146
SaqAI TTAA 3 cut(s) 21, 32, 168
ScrFI CCNGG 1 cut(s) 173
SetI ASST 4 cut(s) 21, 108, 216, 254
SfaNI GCATC 3 cut(s) 37, 90, 235
SmiMI CAYNNNNRTG 1 cut(s) 146
SphI GCATGC 1 cut(s) 151
SsiI CCGC 4 cut(s) 4, 185, 218, 231
SspMI CTAG 2 cut(s) 107, 249
StyD4I CCNGG 1 cut(s) 171
Tru1I TTAA 3 cut(s) 21, 32, 168
Tru9I TTAA 3 cut(s) 21, 32, 168
TspDTI ATGAA 2 cut(s) 90, 130
XceI RCATGY 1 cut(s) 151
XspI CTAG 2 cut(s) 107, 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.