pycom01g17980

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Reverse (-)
17151773 .. 17152132
360 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 360 bp
ATGAAGATGAGTTTTATAGTTGGCTTCTTGAAAGAGGAGTTTTATAGGAAGTTTTCTGGCTTCTTTCGTAAAAGGAGTTTGTTAGAAAAAGTATCCAGCAAATCAAAGGAGTTGGCTTCATTTTTCAAAGCTTTTTTAGCAATTATCTTGCATGGTTGCGACGACATGGGTTGTGTGGTAGATGTGAAATCTGTTCATGGGTCGGCGTTAAAATCCGAGCCTTCGGACCAGAACTTGCTGGAGGTGTTGAACCATGTAGCTCGTGCCTATTCGATATGCTCGGATTTCGGCACAGGTCGTCGTGATGAAATGCCGCAGAGGAAAATATTTGACGGTGACAGAGAGCGGTTTGTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

120

Amino Acids

13.61

Weight (kDa)

9.07

Isoelectric Point (pI)

37.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 346
AciI CCGC 2 cut(s) 314, 346
AgsI TTSAA 3 cut(s) 31, 127, 250
AluBI AGCT 2 cut(s) 131, 260
AluI AGCT 2 cut(s) 131, 260
AspS9I GGNCC 1 cut(s) 226
AsuHPI GGTGA 1 cut(s) 347
AvaII GGWCC 1 cut(s) 226
BauI CACGAG 1 cut(s) 261
BciVI GTATCC 1 cut(s) 103
BfuI GTATCC 1 cut(s) 103
BisI GCNGC 1 cut(s) 314
BlsI GCNGC 1 cut(s) 315
Bme18I GGWCC 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 226
BpmI CTGGAG 1 cut(s) 260
BseRI GAGGAG 1 cut(s) 50
BspACI CCGC 2 cut(s) 314, 346
BsrBI CCGCTC 1 cut(s) 346
BssSI CACGAG 1 cut(s) 261
Bst2BI CACGAG 1 cut(s) 261
Bst4CI ACNGT 1 cut(s) 335
BstMWI GCNNNNNNNGC 1 cut(s) 137
BsuI GTATCC 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 226
CviAII CATG 4 cut(s) 152, 166, 197, 254
CviJI RGCY 6 cut(s) 24, 60, 116, 131, 220, 260
CviKI_1 RGCY 6 cut(s) 24, 60, 116, 131, 220, 260
Eco47I GGWCC 1 cut(s) 226
FaeI CATG 4 cut(s) 155, 169, 200, 257
FaiI YATR 7 cut(s) 17, 45, 153, 167, 198, 255, 277
FatI CATG 4 cut(s) 151, 165, 196, 253
Fnu4HI GCNGC 1 cut(s) 314
Fsp4HI GCNGC 1 cut(s) 314
GluI GCNGC 1 cut(s) 314
GsuI CTGGAG 1 cut(s) 260
Hin1II CATG 4 cut(s) 155, 169, 200, 257
HindIII AAGCTT 1 cut(s) 129
HphI GGTGA 1 cut(s) 347
Hpy188I TCNGA 3 cut(s) 217, 226, 283
Hpy188III TCNNGA 2 cut(s) 28, 302
Hpy99I CGWCG 2 cut(s) 164, 303
HpyAV CCTTC 1 cut(s) 231
HpyCH4III ACNGT 1 cut(s) 335
HpyCH4V TGCA 1 cut(s) 151
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
Hsp92II CATG 4 cut(s) 155, 169, 200, 257
LpnPI CCDG 5 cut(s) 42, 109, 224, 242, 279
MaeIII GTNAC 1 cut(s) 335
MbiI CCGCTC 1 cut(s) 346
MboII GAAGA 1 cut(s) 16
MluCI AATT 1 cut(s) 141
MnlI CCTC 3 cut(s) 28, 235, 312
MseI TTAA 1 cut(s) 209
MwoI GCNNNNNNNGC 1 cut(s) 137
NlaIII CATG 4 cut(s) 155, 169, 200, 257
NmuCI GTSAC 1 cut(s) 335
PkrI GCNGC 1 cut(s) 315
PspPI GGNCC 1 cut(s) 226
SaqAI TTAA 1 cut(s) 209
SatI GCNGC 1 cut(s) 314
Sau96I GGNCC 1 cut(s) 226
SetI ASST 4 cut(s) 133, 246, 262, 298
SinI GGWCC 1 cut(s) 226
Sse9I AATT 1 cut(s) 141
SsiI CCGC 2 cut(s) 314, 346
SspI AATATT 1 cut(s) 327
TaaI ACNGT 1 cut(s) 335
TaqI TCGA 1 cut(s) 272
TasI AATT 1 cut(s) 141
TauI GCSGC 1 cut(s) 316
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TseFI GTSAC 1 cut(s) 335
Tsp45I GTSAC 1 cut(s) 335
TspDTI ATGAA 4 cut(s) 17, 108, 185, 321
VpaK11BI GGWCC 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.