pycom01g18820

BP28CT (NUC211) domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Forward (+)
17658591 .. 17659314
724 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 276 bp
ATGTCATGTTCTTTGGAAAATACCAGTCTAGCATGTGATGTTGCTGTTTTATGCCTGAATAATGCTAGTTCTGATATCCATGATAATGTTGACCGTTGCAATACACTTGCTGCCATGATATTTCCTTTACTCTTTGCTCTGCCTAAGACACAGAAGTTAAATTTGAAAGCTTTGGAAATAGCTAAGGAGGTAAAATGGCCACTTTTTGGGAATCTTGCTGGCGTTTCAGGTACAGTAAAGCTAGGCATCACAGCCAGGAAGGCTGTCCTCAATTAA

Protein Analysis

92

Amino Acids

9.73

Weight (kDa)

8.43

Isoelectric Point (pI)

25.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 206
AcoI YGGCCR 1 cut(s) 197
AcsI RAATTY 1 cut(s) 160
AfaI GTAC 1 cut(s) 232
AfiI CCNNNNNNNGG 1 cut(s) 206
AgsI TTSAA 1 cut(s) 166
AjnI CCWGG 1 cut(s) 254
AluBI AGCT 3 cut(s) 170, 182, 241
AluI AGCT 3 cut(s) 170, 182, 241
AoxI GGCC 1 cut(s) 197
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 1 cut(s) 160
BalI TGGCCA 1 cut(s) 199
BbvI GCAGC 1 cut(s) 97
BciT130I CCWGG 1 cut(s) 256
BfaI CTAG 3 cut(s) 29, 66, 242
BglI GCCNNNNNGGC 1 cut(s) 260
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 1 cut(s) 256
BmrFI CCNGG 1 cut(s) 256
BmsI GCATC 1 cut(s) 255
Bpu10I CCTNAGC 1 cut(s) 183
Bsc4I CCNNNNNNNGG 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 24
BseBI CCWGG 1 cut(s) 256
BseLI CCNNNNNNNGG 1 cut(s) 206
BseNI ACTGG 1 cut(s) 24
BseXI GCAGC 1 cut(s) 97
BshFI GGCC 1 cut(s) 199
BslI CCNNNNNNNGG 1 cut(s) 206
BsnI GGCC 1 cut(s) 199
BspANI GGCC 1 cut(s) 199
BsrI ACTGG 1 cut(s) 24
Bst2UI CCWGG 1 cut(s) 256
Bst4CI ACNGT 2 cut(s) 95, 235
BstC8I GCNNGC 1 cut(s) 220
BstDEI CTNAG 2 cut(s) 144, 183
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstNI CCWGG 1 cut(s) 256
BstNSI RCATGY 1 cut(s) 36
BstSCI CCNGG 1 cut(s) 254
BstV1I GCAGC 1 cut(s) 97
BsuRI GGCC 1 cut(s) 199
Cac8I GCNNGC 1 cut(s) 220
Csp6I GTAC 1 cut(s) 231
CviAII CATG 4 cut(s) 6, 33, 80, 115
CviJI RGCY 6 cut(s) 170, 182, 199, 241, 254, 263
CviKI_1 RGCY 6 cut(s) 170, 182, 199, 241, 254, 263
CviQI GTAC 1 cut(s) 231
DdeI CTNAG 2 cut(s) 144, 183
EaeI YGGCCR 1 cut(s) 197
Eco32I GATATC 1 cut(s) 76
EcoRII CCWGG 1 cut(s) 254
EcoRV GATATC 1 cut(s) 76
FaeI CATG 4 cut(s) 9, 36, 83, 118
FaiI YATR 5 cut(s) 7, 34, 52, 81, 116
FatI CATG 4 cut(s) 5, 32, 79, 114
Fnu4HI GCNGC 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 3 cut(s) 29, 66, 242
GluI GCNGC 1 cut(s) 111
HaeIII GGCC 1 cut(s) 199
Hin1II CATG 4 cut(s) 9, 36, 83, 118
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HindIII AAGCTT 1 cut(s) 168
HinfI GANTC 1 cut(s) 211
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 1 cut(s) 73
Hpy8I GTNNAC 1 cut(s) 91
HpyAV CCTTC 1 cut(s) 253
HpyCH4III ACNGT 2 cut(s) 95, 235
HpyCH4V TGCA 1 cut(s) 99
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
HpyF3I CTNAG 2 cut(s) 144, 183
Hsp92II CATG 4 cut(s) 9, 36, 83, 118
LpnPI CCDG 6 cut(s) 37, 68, 204, 213, 241, 268
Lsp1109I GCAGC 1 cut(s) 97
LweI GCATC 1 cut(s) 255
MaeI CTAG 3 cut(s) 29, 66, 242
MlsI TGGCCA 1 cut(s) 199
MluCI AATT 2 cut(s) 160, 271
MluNI TGGCCA 1 cut(s) 199
MnlI CCTC 1 cut(s) 181
Mox20I TGGCCA 1 cut(s) 199
MscI TGGCCA 1 cut(s) 199
MseI TTAA 2 cut(s) 158, 274
MslI CAYNNNNRTG 1 cut(s) 84
Msp20I TGGCCA 1 cut(s) 199
MspR9I CCNGG 1 cut(s) 256
MvaI CCWGG 1 cut(s) 256
MwoI GCNNNNNNNGC 1 cut(s) 260
NlaIII CATG 4 cut(s) 9, 36, 83, 118
NspI RCATGY 1 cut(s) 36
PfeI GAWTC 1 cut(s) 211
PflMI CCANNNNNTGG 1 cut(s) 206
PkrI GCNGC 1 cut(s) 112
Psp6I CCWGG 1 cut(s) 254
PspGI CCWGG 1 cut(s) 254
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
RseI CAYNNNNRTG 1 cut(s) 84
SaqAI TTAA 2 cut(s) 158, 274
SatI GCNGC 1 cut(s) 111
ScrFI CCNGG 1 cut(s) 256
SetI ASST 5 cut(s) 172, 184, 192, 232, 243
SfaNI GCATC 1 cut(s) 255
SmiMI CAYNNNNRTG 1 cut(s) 84
Sse9I AATT 2 cut(s) 160, 271
SspMI CTAG 3 cut(s) 29, 66, 242
StyD4I CCNGG 1 cut(s) 254
TaaI ACNGT 2 cut(s) 95, 235
TasI AATT 2 cut(s) 160, 271
TfiI GAWTC 1 cut(s) 211
Tru1I TTAA 2 cut(s) 158, 274
Tru9I TTAA 2 cut(s) 158, 274
TseI GCWGC 1 cut(s) 110
Van91I CCANNNNNTGG 1 cut(s) 206
XapI RAATTY 1 cut(s) 160
XceI RCATGY 1 cut(s) 36
XspI CTAG 3 cut(s) 29, 66, 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.