Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

17832109 .. 17833220

Gene Structure 1112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGCCCTTCTCCCCAGGTATGGAAGCTTGTGGAGTTGTGACAGCCGTAGGACCTGGAGTAACAGGCAGGCGAGTTGGAGATCTGGTGGCCTATGTTGGCACTCCGATGGGGTCATATGCGGAAGAGCAGATTCTTCCTGAAAACAAAGTGGTGCCCGTTCCTCCTTCAATTGATCCTATTGTTGCAGCATCCATATTGCTTAAGGGTATGACAGCTCAGGTTCTACTACGCCAGTCTTTCAAGGTCGAACCAGGACACACAGTCCTTGTTCACGCAGCAGCTGGTGGAGTTGGATCCCTTTTATGCCAGTGGGCTAATGCGCTTGGTGCAATTGTCATTGGAACTGTATCAACTAAAGAGAAGACAGCTCAGGCCAAGGATGATGGATGTCGCCATGTCATAGTCTACACGGAAGAGGATTTTGTTGCTCGAGTGACAGAAATAACACCTGACAATGGCGTTGATGTTGTCTATGATTCTGTAGGGAAGGATACCTTTCAGGTAAATCTTACTTTTCATCCCTCAATTTTATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003960 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009653 GO:0009664 GO:0009826 GO:0009827 GO:0009828 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016491 GO:0016651 GO:0016655 GO:0017091 GO:0030312 GO:0032502 GO:0032989 GO:0033554 GO:0034599 GO:0040007 GO:0042221 GO:0042545 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051716 GO:0055114 GO:0060560 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

179

Amino Acids

18.72

Weight (kDa)

5.09

Isoelectric Point (pI)

38.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	1 - 54	9.4e-08	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	96 - 170	9.9e-18	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	151
AccI	GTMKAC	1 cut(s)	405
AciI	CCGC	1 cut(s)	119
AclWI	GGATC	3 cut(s)	167, 288, 301
AfiI	CCNNNNNNNGG	2 cut(s)	19, 455
AflII	CTTAAG	1 cut(s)	200
AgsI	TTSAA	2 cut(s)	168, 241
AhdI	GACNNNNNGTC	1 cut(s)	260
AjnI	CCWGG	3 cut(s)	13, 52, 250
AluBI	AGCT	4 cut(s)	26, 215, 281, 368
AluI	AGCT	4 cut(s)	26, 215, 281, 368
AlwI	GGATC	3 cut(s)	167, 288, 301
AlwNI	CAGNNNCTG	1 cut(s)	281
Ama87I	CYCGRG	1 cut(s)	429
AoxI	GGCC	2 cut(s)	87, 372
ApeKI	GCWGC	3 cut(s)	185, 275, 278
AspLEI	GCGC	1 cut(s)	322
AspS9I	GGNCC	1 cut(s)	50
AvaI	CYCGRG	1 cut(s)	429
AvaII	GGWCC	1 cut(s)	50
BaeGI	GKGCMC	1 cut(s)	156
BamHI	GGATCC	1 cut(s)	293
BanI	GGYRCC	1 cut(s)	151
BbsI	GAAGAC	1 cut(s)	368
BbvI	GCAGC	3 cut(s)	197, 287, 290
BccI	CCATC	2 cut(s)	100, 377
BceAI	ACGGC	1 cut(s)	29
BciT130I	CCWGG	3 cut(s)	15, 54, 252
BciVI	GTATCC	1 cut(s)	484
BfmI	CTRYAG	1 cut(s)	480
BfrI	CTTAAG	1 cut(s)	200
BfuI	GTATCC	1 cut(s)	484
BglII	AGATCT	1 cut(s)	79
BisI	GCNGC	3 cut(s)	186, 276, 279
BlsI	GCNGC	3 cut(s)	187, 277, 280
Bme1390I	CCNGG	3 cut(s)	15, 54, 252
Bme18I	GGWCC	1 cut(s)	50
BmeRI	GACNNNNNGTC	1 cut(s)	260
BmeT110I	CYCGRG	1 cut(s)	429
BmgT120I	GGNCC	1 cut(s)	50
BmiI	GGNNCC	2 cut(s)	153, 295
BmrFI	CCNGG	3 cut(s)	15, 54, 252
BmsI	GCATC	1 cut(s)	197
BpiI	GAAGAC	1 cut(s)	368
BpmI	CTGGAG	1 cut(s)	75
Bpu10I	CCTNAGC	2 cut(s)	216, 369
BsaJI	CCNNGG	2 cut(s)	13, 375
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bsc4I	CCNNNNNNNGG	2 cut(s)	19, 455
Bse1I	ACTGG	2 cut(s)	232, 307
BseBI	CCWGG	3 cut(s)	15, 54, 252
BseDI	CCNNGG	2 cut(s)	13, 375
BseGI	GGATG	4 cut(s)	188, 385, 392, 517
BseLI	CCNNNNNNNGG	2 cut(s)	19, 455
BseMII	CTCAG	2 cut(s)	230, 383
BseNI	ACTGG	2 cut(s)	232, 307
BseSI	GKGCMC	1 cut(s)	156
BseXI	GCAGC	3 cut(s)	197, 287, 290
BshFI	GGCC	2 cut(s)	89, 374
BshNI	GGYRCC	1 cut(s)	151
BsiHKCI	CYCGRG	1 cut(s)	429
BslI	CCNNNNNNNGG	2 cut(s)	19, 455
BsnI	GGCC	2 cut(s)	89, 374
BsoBI	CYCGRG	1 cut(s)	429
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp143I	GATC	3 cut(s)	79, 172, 293
BspACI	CCGC	1 cut(s)	119
BspANI	GGCC	2 cut(s)	89, 374
BspCNI	CTCAG	2 cut(s)	229, 382
BspLI	GGNNCC	2 cut(s)	153, 295
BspPI	GGATC	3 cut(s)	167, 288, 301
BspQI	GCTCTTC	1 cut(s)	117
BspT107I	GGYRCC	1 cut(s)	151
BspTI	CTTAAG	1 cut(s)	200
BsrI	ACTGG	2 cut(s)	232, 307
BssECI	CCNNGG	2 cut(s)	13, 375
BssMI	GATC	3 cut(s)	79, 172, 293
BssT1I	CCWWGG	1 cut(s)	375
Bst2UI	CCWGG	3 cut(s)	15, 54, 252
Bst4CI	ACNGT	2 cut(s)	262, 346
Bst6I	CTCTTC	2 cut(s)	117, 408
BstAFI	CTTAAG	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	68
BstDEI	CTNAG	2 cut(s)	216, 369
BstF5I	GGATG	4 cut(s)	188, 385, 392, 517
BstHHI	GCGC	1 cut(s)	322
BstKTI	GATC	3 cut(s)	82, 175, 296
BstMBI	GATC	3 cut(s)	79, 172, 293
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstNI	CCWGG	3 cut(s)	15, 54, 252
BstSCI	CCNGG	3 cut(s)	13, 52, 250
BstSFI	CTRYAG	1 cut(s)	480
BstSLI	GKGCMC	1 cut(s)	156
BstV1I	GCAGC	3 cut(s)	197, 287, 290
BstV2I	GAAGAC	1 cut(s)	368
BstX2I	RGATCY	2 cut(s)	79, 293
BstYI	RGATCY	2 cut(s)	79, 293
BsuI	GTATCC	1 cut(s)	484
BsuRI	GGCC	2 cut(s)	89, 374
BtsCI	GGATG	4 cut(s)	188, 385, 392, 517
BtsIMutI	CAGTG	1 cut(s)	314
Cac8I	GCNNGC	1 cut(s)	68
CaiI	CAGNNNCTG	1 cut(s)	281
CfoI	GCGC	1 cut(s)	322
Cfr13I	GGNCC	1 cut(s)	50
CviAII	CATG	1 cut(s)	395
CviJI	RGCY	8 cut(s)	26, 44, 89, 215, 281, 314, 368, 374
CviKI_1	RGCY	8 cut(s)	26, 44, 89, 215, 281, 314, 368, 374
DdeI	CTNAG	2 cut(s)	216, 369
DpnI	GATC	3 cut(s)	81, 174, 295
DpnII	GATC	3 cut(s)	79, 172, 293
DriI	GACNNNNNGTC	1 cut(s)	260
Eam1104I	CTCTTC	2 cut(s)	117, 408
Eam1105I	GACNNNNNGTC	1 cut(s)	260
EarI	CTCTTC	2 cut(s)	117, 408
Eco130I	CCWWGG	1 cut(s)	375
Eco47I	GGWCC	1 cut(s)	50
Eco88I	CYCGRG	1 cut(s)	429
EcoO109I	RGGNCCY	1 cut(s)	50
EcoRII	CCWGG	3 cut(s)	13, 52, 250
EcoT14I	CCWWGG	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	375
FaeI	CATG	1 cut(s)	398
FalI	AAGNNNNNCTT	2 cut(s)	479, 511
FatI	CATG	1 cut(s)	394
FauNDI	CATATG	1 cut(s)	115
FblI	GTMKAC	1 cut(s)	405
Fnu4HI	GCNGC	3 cut(s)	186, 276, 279
FokI	GGATG	4 cut(s)	175, 392, 399, 504
Fsp4HI	GCNGC	3 cut(s)	186, 276, 279
GlaI	GCGC	1 cut(s)	321
GluI	GCNGC	3 cut(s)	186, 276, 279
GsuI	CTGGAG	1 cut(s)	75
HaeIII	GGCC	2 cut(s)	89, 374
HhaI	GCGC	1 cut(s)	322
Hin1II	CATG	1 cut(s)	398
Hin6I	GCGC	1 cut(s)	320
HinP1I	GCGC	1 cut(s)	320
HindIII	AAGCTT	1 cut(s)	24
HinfI	GANTC	2 cut(s)	130, 476
Hpy166II	GTNNAC	2 cut(s)	271, 406
Hpy188I	TCNGA	1 cut(s)	105
Hpy188III	TCNNGA	1 cut(s)	137
Hpy8I	GTNNAC	2 cut(s)	271, 406
HpyAV	CCTTC	3 cut(s)	16, 174, 481
HpyCH4III	ACNGT	2 cut(s)	262, 346
HpyCH4V	TGCA	2 cut(s)	185, 329
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
HpyF3I	CTNAG	2 cut(s)	216, 369
Hsp92II	CATG	1 cut(s)	398
HspAI	GCGC	1 cut(s)	320
Kzo9I	GATC	3 cut(s)	79, 172, 293
LguI	GCTCTTC	1 cut(s)	117
Lsp1109I	GCAGC	3 cut(s)	197, 287, 290
LweI	GCATC	1 cut(s)	197
MaeIII	GTNAC	3 cut(s)	37, 58, 433
MalI	GATC	3 cut(s)	81, 174, 295
MboI	GATC	3 cut(s)	79, 172, 293
MboII	GAAGA	4 cut(s)	125, 134, 373, 425
MfeI	CAATTG	2 cut(s)	168, 330
MflI	RGATCY	2 cut(s)	79, 293
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	3 cut(s)	168, 330, 525
MmeI	TCCRAC	2 cut(s)	55, 271
MnlI	CCTC	3 cut(s)	171, 409, 532
MseI	TTAA	1 cut(s)	201
MslI	CAYNNNNRTG	1 cut(s)	104
MspA1I	CMGCKG	1 cut(s)	281
MspCI	CTTAAG	1 cut(s)	200
MspR9I	CCNGG	3 cut(s)	15, 54, 252
MunI	CAATTG	2 cut(s)	168, 330
MvaI	CCWGG	3 cut(s)	15, 54, 252
MwoI	GCNNNNNNNGC	1 cut(s)	326
NdeI	CATATG	1 cut(s)	115
NdeII	GATC	3 cut(s)	79, 172, 293
NlaIII	CATG	1 cut(s)	398
NlaIV	GGNNCC	2 cut(s)	153, 295
NmuCI	GTSAC	2 cut(s)	37, 433
PaeR7I	CTCGAG	1 cut(s)	429
PciSI	GCTCTTC	1 cut(s)	117
PfeI	GAWTC	2 cut(s)	130, 476
PkrI	GCNGC	3 cut(s)	187, 277, 280
PpuMI	RGGWCCY	1 cut(s)	50
Psp5II	RGGWCCY	1 cut(s)	50
Psp6I	CCWGG	3 cut(s)	13, 52, 250
PspGI	CCWGG	3 cut(s)	13, 52, 250
PspN4I	GGNNCC	2 cut(s)	153, 295
PspPI	GGNCC	1 cut(s)	50
PspPPI	RGGWCCY	1 cut(s)	50
PspXI	VCTCGAGB	1 cut(s)	429
PstNI	CAGNNNCTG	1 cut(s)	281
PsuI	RGATCY	2 cut(s)	79, 293
PvuII	CAGCTG	1 cut(s)	281
RseI	CAYNNNNRTG	1 cut(s)	104
SapI	GCTCTTC	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	3 cut(s)	186, 276, 279
Sau3AI	GATC	3 cut(s)	79, 172, 293
Sau96I	GGNCC	1 cut(s)	50
ScrFI	CCNGG	3 cut(s)	15, 54, 252
SduI	GDGCHC	1 cut(s)	156
SfaNI	GCATC	1 cut(s)	197
SfcI	CTRYAG	1 cut(s)	480
Sfr274I	CTCGAG	1 cut(s)	429
SinI	GGWCC	1 cut(s)	50
SlaI	CTCGAG	1 cut(s)	429
SmiMI	CAYNNNNRTG	1 cut(s)	104
SmlI	CTYRAG	2 cut(s)	200, 429
SmoI	CTYRAG	2 cut(s)	200, 429
Sse9I	AATT	3 cut(s)	168, 330, 525
SsiI	CCGC	1 cut(s)	119
StyD4I	CCNGG	3 cut(s)	13, 52, 250
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	2 cut(s)	262, 346
TaqI	TCGA	2 cut(s)	246, 430
TasI	AATT	3 cut(s)	168, 330, 525
TfiI	GAWTC	2 cut(s)	130, 476
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	1 cut(s)	314
TseFI	GTSAC	2 cut(s)	37, 433
TseI	GCWGC	3 cut(s)	185, 275, 278
Tsp45I	GTSAC	2 cut(s)	37, 433
TspDTI	ATGAA	1 cut(s)	506
TspGWI	ACGGA	1 cut(s)	425
TspRI	CASTG	1 cut(s)	314
Vha464I	CTTAAG	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	50
XhoI	CTCGAG	1 cut(s)	429
XmiI	GTMKAC	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.