Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

18198440 .. 18198727

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGTGAATCTTTACAGAAGGTCAGGTCGGATCAAAGAAGCTTACGGGATCATAACGGATGGAATGGAGTTCGAGGCTGGTCCGACGGTGTGGGGTGCACTGCTGTATGCTTGCTACCTTTATGGCAATGTTGATATCGGGGAGGTTGCTGCAGAGAAGCTTTTTGATCTGGAGCCAGATAACGAGTATAATTTCAAGCTTTTGATGAAGATTTATGGCAATGTGGGTATGTTGGAGGATGTGGAGAGAGTGAGATCGATGATGGTGGATAGAGGATTGGACTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

ADK PPR PPR_2

Protein Analysis

96

Amino Acids

10.81

Weight (kDa)

4.52

Isoelectric Point (pI)

16.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	41 - 92	1.6e-10	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	38, 56
AgsI	TTSAA	1 cut(s)	196
AluBI	AGCT	3 cut(s)	41, 160, 199
AluI	AGCT	3 cut(s)	41, 160, 199
Alw21I	GWGCWC	1 cut(s)	100
Alw44I	GTGCAC	1 cut(s)	96
AlwI	GGATC	2 cut(s)	38, 56
ApaLI	GTGCAC	1 cut(s)	96
ApeKI	GCWGC	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	80
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	80
BaeGI	GKGCMC	1 cut(s)	100
Bbv12I	GWGCWC	1 cut(s)	100
BbvI	GCAGC	1 cut(s)	136
BccI	CCATC	2 cut(s)	53, 256
BfmI	CTRYAG	1 cut(s)	150
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
Bme18I	GGWCC	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	80
BmiI	GGNNCC	1 cut(s)	174
BpmI	CTGGAG	1 cut(s)	191
Bsa29I	ATCGAT	1 cut(s)	257
Bse3DI	GCAATG	2 cut(s)	133, 226
BseCI	ATCGAT	1 cut(s)	257
BseGI	GGATG	2 cut(s)	64, 244
BseMI	GCAATG	2 cut(s)	133, 226
BseSI	GKGCMC	1 cut(s)	100
BseXI	GCAGC	1 cut(s)	136
BshVI	ATCGAT	1 cut(s)	257
BsiHKAI	GWGCWC	1 cut(s)	100
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp143I	GATC	4 cut(s)	30, 48, 166, 254
BspDI	ATCGAT	1 cut(s)	257
BspLI	GGNNCC	1 cut(s)	174
BspMAI	CTGCAG	1 cut(s)	154
BspPI	GGATC	2 cut(s)	38, 56
BsrDI	GCAATG	2 cut(s)	133, 226
BssMI	GATC	4 cut(s)	30, 48, 166, 254
Bst4CI	ACNGT	1 cut(s)	88
BstC8I	GCNNGC	1 cut(s)	112
BstF5I	GGATG	2 cut(s)	64, 244
BstKTI	GATC	4 cut(s)	33, 51, 169, 257
BstMBI	GATC	4 cut(s)	30, 48, 166, 254
BstSFI	CTRYAG	1 cut(s)	150
BstSLI	GKGCMC	1 cut(s)	100
BstV1I	GCAGC	1 cut(s)	136
Bsu15I	ATCGAT	1 cut(s)	257
BsuTUI	ATCGAT	1 cut(s)	257
BtsCI	GGATG	2 cut(s)	64, 244
BtsI	GCAGTG	1 cut(s)	98
BtsIMutI	CAGTG	1 cut(s)	98
Cac8I	GCNNGC	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	80
ClaI	ATCGAT	1 cut(s)	257
CviJI	RGCY	5 cut(s)	41, 77, 160, 175, 199
CviKI_1	RGCY	5 cut(s)	41, 77, 160, 175, 199
DpnI	GATC	4 cut(s)	32, 50, 168, 256
DpnII	GATC	4 cut(s)	30, 48, 166, 254
Eco32I	GATATC	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	80
EcoRV	GATATC	1 cut(s)	136
FaiI	YATR	7 cut(s)	53, 108, 123, 189, 216, 230, 286
Fnu4HI	GCNGC	1 cut(s)	150
FokI	GGATG	2 cut(s)	71, 251
Fsp4HI	GCNGC	1 cut(s)	150
GluI	GCNGC	1 cut(s)	150
GsuI	CTGGAG	1 cut(s)	191
HindIII	AAGCTT	3 cut(s)	39, 158, 197
HinfI	GANTC	2 cut(s)	7, 281
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	98
Hpy188I	TCNGA	2 cut(s)	30, 84
Hpy188III	TCNNGA	1 cut(s)	170
Hpy8I	GTNNAC	1 cut(s)	98
Hpy99I	CGWCG	1 cut(s)	88
HpyAV	CCTTC	1 cut(s)	12
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4V	TGCA	2 cut(s)	98, 152
Kzo9I	GATC	4 cut(s)	30, 48, 166, 254
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	4 cut(s)	9, 63, 155, 189
Lsp1109I	GCAGC	1 cut(s)	136
MalI	GATC	4 cut(s)	32, 50, 168, 256
MboI	GATC	4 cut(s)	30, 48, 166, 254
MboII	GAAGA	1 cut(s)	220
MhlI	GDGCHC	1 cut(s)	100
MluCI	AATT	1 cut(s)	190
MlyI	GAGTC	1 cut(s)	275
MmeI	TCCRAC	3 cut(s)	8, 107, 213
MnlI	CCTC	4 cut(s)	67, 136, 229, 266
NdeII	GATC	4 cut(s)	30, 48, 166, 254
NlaIV	GGNNCC	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	7
PkrI	GCNGC	1 cut(s)	151
PleI	GAGTC	1 cut(s)	275
PpsI	GAGTC	1 cut(s)	275
PspN4I	GGNNCC	1 cut(s)	174
PspPI	GGNCC	1 cut(s)	80
PstI	CTGCAG	1 cut(s)	154
SatI	GCNGC	1 cut(s)	150
Sau3AI	GATC	4 cut(s)	30, 48, 166, 254
Sau96I	GGNCC	1 cut(s)	80
SchI	GAGTC	1 cut(s)	275
SduI	GDGCHC	1 cut(s)	100
SetI	ASST	7 cut(s)	23, 28, 43, 120, 147, 162, 201
SfcI	CTRYAG	1 cut(s)	150
SinI	GGWCC	1 cut(s)	80
Sse9I	AATT	1 cut(s)	190
TaaI	ACNGT	1 cut(s)	88
TaqI	TCGA	2 cut(s)	72, 257
TasI	AATT	1 cut(s)	190
TfiI	GAWTC	1 cut(s)	7
TscAI	CASTG	1 cut(s)	105
TseI	GCWGC	1 cut(s)	149
TspDTI	ATGAA	1 cut(s)	221
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	1 cut(s)	105
VneI	GTGCAC	1 cut(s)	96
VpaK11BI	GGWCC	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.