Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

18418787 .. 18421538

Gene Structure 2752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1884 bp

ATGGTACTTACTATTCACCTTACCCTTTATTTTGTCTTTATCATTAAAACTCAAAGTTTTCAAATCCTTTTCATTAGTTTTCCTAATATAAAATGGCGGTTGTTTGTTTATTTGTCAAACCCAGCTGGTGCAATGGTTGGTGTGGTCTCACTTGTTGACCTCAACGGCTACTCTTGCTACAACATAGCAATTTTCCAACTCACTCCAATCGCATTGTTAATCACCTCTCCAATTCGAGTTTTCCTTTCTCACGGTGTCAATAATATACCGGCATATAATGAATCCACTCGTACATACATACATACATATCTTCCTAATGAATCAGAGCAAGTCTGCAATATGATGGATTACACAAGTCAATGGTTGAGACAAACGCTGACTCATCACATCACTTCCATGGATTCGAAATACTCCACCACAATTTATTCGTGCTCTCTGTTGATAGGGCGTTTAGAGCAGTTGTCAAGTTGGATTTCAAATCTTCCACACCTCGTCAGGGTAACGATTTTTTGGTCAAGGTTGAAAGATTCCCCATTAAAAGCCCTTCAAAATCTACCTAATCTGTTGGAGCTAGTTTTGAAAATCAATGCATATGATGGAGTGCAGATGCATTTTGAGGAAGGAGGATTTCAGAAGCTGAGGCATCTGGAACTCAGGGACATGGAGGGACTAAATTCATTGATCATAGACAATGGGGTTATGCCTCTTCTCCAAGAGTTTAACATTGGACCTTCCCCACAACTGAAGGAGGTGCCCTCTGGCATCCAACGTCTCCGAAATGGTGTTGCACATCTACAAGATATCCGCTTTAGTTACAAGTTCAGAACAAGATGGGTTGTATATGAAACTCACCTTGTGAAACCAAGCATGGGAATGGGATGGTTTCTTTTTGTACAGCTCTGGTATCGTAGTTTCTCTTGCAGGTTGACTGGGAGTGGCTCTTTCTCTTCTGTTTTCTTTAATTTTATTGGTGGTTGCAATAAAGCTGTTTGTTTAATAAAATTAAAAATAAATAGGTTTCGTCGTCTTAAACTTAGAACGCTTAAATTTTTTACAAAGATAAATGGCAACTATTTACCTCAAATCTTTGTTGTAAAAATGAAAAATCCCTTCAACTTTTTTTTTTGTGAGTTTTGTTTCATCATAAAACCAATTGACAACATGAGAAGTATCTCAACACGCTCCCTCACGTGTGACAAATTTTCAATTCGAACACGTAGACAACACAAACGGGGTGACGTAGAGCACGTGTGGCCATTGGGTTTCACGCGTTGGACAACTTACTCTAATACCATGAAGAAGTTGGGGTTCCACCATAAAATCAATTGGCATTGTAGGGAGTACAATGTAAGATTCACTCTCAACAATAATAAGACTAAAGAACATGATTTAGCATTGACCATTGAGGTCGTGCTAGCTGAGCTACTGAATAATAACAAAAGAAAAGAAATTTCATTCTTTTTGGGGGTAAAGATTTGTACCACATCTACAATAGAGATAAATTTTTTAGTGTCCGAAACACGGGCACTTACGTCATATGTCATTATACAAGTGGAGAAACACTTGAAAAATCCCAACACTTATGAAAATTATCTCTTAATAGAGATTGAAAATTTGAAAGGTTTGACGAATGACAGCAAGCCTACCAATTTCGTTTGTTGTGCTACCTTTTTTGAATCTATGTATCAAGGGTGGAGATTTTTTATTTGCAGGATCTATTACATTAATTTACCTATGAGCGTCGTACTTCTTATAACAATTTATGTTTCACATTTTATCTATGTAATCATGCAGTTCCTAATGAGTACAGATGAGTGGTTGAAGTCTACTCATTGCTTTGCAATTAATGATGCTTATTGTAATATTTTTAGATCTAGTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

628

Amino Acids

73.39

Weight (kDa)

9.45

Isoelectric Point (pI)

43.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	146 - 264	9.5e-11	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1754, 1882
Acc36I	ACCTGC	1 cut(s)	912
AccB1I	GGYRCC	1 cut(s)	751
AccI	GTMKAC	2 cut(s)	1219, 1826
AccII	CGCG	1 cut(s)	1270
AciI	CCGC	2 cut(s)	97, 805
AclWI	GGATC	1 cut(s)	1721
AcoI	YGGCCR	1 cut(s)	1253
AcsI	RAATTY	6 cut(s)	673, 1046, 1199, 1449, 1501, 1612
AcuI	CTGAAG	1 cut(s)	764
AcvI	CACGTG	2 cut(s)	1191, 1249
AdeI	CACNNNGTG	1 cut(s)	856
AfaI	GTAC	7 cut(s)	6, 292, 894, 1343, 1480, 1746, 1807
AfiI	CCNNNNNNNGG	3 cut(s)	496, 869, 1521
AflIII	ACRYGT	4 cut(s)	1190, 1214, 1248, 1268
AluBI	AGCT	7 cut(s)	125, 571, 637, 898, 986, 1418, 1423
AluI	AGCT	7 cut(s)	125, 571, 637, 898, 986, 1418, 1423
Alw21I	GWGCWC	2 cut(s)	434, 1248
Alw26I	GTCTC	3 cut(s)	151, 361, 776
AlwI	GGATC	1 cut(s)	1721
AlwNI	CAGNNNCTG	1 cut(s)	637
AoxI	GGCC	1 cut(s)	1253
ApoI	RAATTY	6 cut(s)	673, 1046, 1199, 1449, 1501, 1612
AseI	ATTAAT	2 cut(s)	1725, 1845
AspS9I	GGNCC	1 cut(s)	728
AsuHPI	GGTGA	4 cut(s)	8, 214, 842, 1247
AsuII	TTCGAA	2 cut(s)	404, 1210
AsuNHI	GCTAGC	1 cut(s)	1414
AvaII	GGWCC	1 cut(s)	728
BaeGI	GKGCMC	2 cut(s)	756, 1528
BalI	TGGCCA	1 cut(s)	1255
BanI	GGYRCC	1 cut(s)	751
BbrPI	CACGTG	2 cut(s)	1191, 1249
Bbv12I	GWGCWC	2 cut(s)	434, 1248
BbvCI	CCTCAGC	1 cut(s)	638
BccI	CCATC	4 cut(s)	337, 590, 825, 873
BceAI	ACGGC	1 cut(s)	181
BclI	TGATCA	1 cut(s)	681
BcoDI	GTCTC	3 cut(s)	151, 361, 776
BfaI	CTAG	3 cut(s)	572, 1415, 1875
BfuAI	ACCTGC	1 cut(s)	912
BglII	AGATCT	1 cut(s)	1871
BlpI	GCTNAGC	1 cut(s)	1419
Bme18I	GGWCC	1 cut(s)	728
BmgT120I	GGNCC	1 cut(s)	728
BmiI	GGNNCC	2 cut(s)	753, 1310
BmrI	ACTGGG	1 cut(s)	939
BmsI	GCATC	4 cut(s)	597, 652, 771, 1840
BmtI	GCTAGC	1 cut(s)	1418
BmuI	ACTGGG	1 cut(s)	939
BplI	GAGNNNNNCTC	2 cut(s)	740, 772
Bpu10I	CCTNAGC	1 cut(s)	638
Bpu1102I	GCTNAGC	1 cut(s)	1419
Bpu14I	TTCGAA	2 cut(s)	404, 1210
BsaAI	YACGTR	3 cut(s)	1191, 1217, 1249
BsaI	GGTCTC	1 cut(s)	151
BsaJI	CCNNGG	1 cut(s)	396
Bsc4I	CCNNNNNNNGG	3 cut(s)	496, 869, 1521
Bse118I	RCCGGY	1 cut(s)	268
Bse1I	ACTGG	1 cut(s)	934
Bse3DI	GCAATG	2 cut(s)	138, 1831
BseDI	CCNNGG	1 cut(s)	396
BseGI	GGATG	2 cut(s)	762, 884
BseLI	CCNNNNNNNGG	3 cut(s)	496, 869, 1521
BseMI	GCAATG	2 cut(s)	138, 1831
BseMII	CTCAG	3 cut(s)	629, 667, 1410
BseNI	ACTGG	1 cut(s)	934
BseSI	GKGCMC	2 cut(s)	756, 1528
BseYI	CCCAGC	1 cut(s)	121
BsgI	GTGCAG	1 cut(s)	623
Bsh1236I	CGCG	1 cut(s)	1270
BshFI	GGCC	1 cut(s)	1255
BshNI	GGYRCC	1 cut(s)	751
BsiHKAI	GWGCWC	2 cut(s)	434, 1248
BsiSI	CCGG	1 cut(s)	269
BslFI	GGGAC	2 cut(s)	671, 681
BslI	CCNNNNNNNGG	3 cut(s)	496, 869, 1521
BsmAI	GTCTC	3 cut(s)	151, 361, 776
BsmBI	CGTCTC	1 cut(s)	776
BsmFI	GGGAC	2 cut(s)	671, 681
BsnI	GGCC	1 cut(s)	1255
Bso31I	GGTCTC	1 cut(s)	151
Bsp119I	TTCGAA	2 cut(s)	404, 1210
Bsp1286I	GDGCHC	4 cut(s)	434, 756, 1248, 1528
Bsp1407I	TGTACA	1 cut(s)	892
Bsp143I	GATC	3 cut(s)	681, 1713, 1871
Bsp1720I	GCTNAGC	1 cut(s)	1419
Bsp19I	CCATGG	1 cut(s)	396
BspACI	CCGC	2 cut(s)	97, 805
BspANI	GGCC	1 cut(s)	1255
BspCNI	CTCAG	3 cut(s)	630, 666, 1411
BspFNI	CGCG	1 cut(s)	1270
BspLI	GGNNCC	2 cut(s)	753, 1310
BspMI	ACCTGC	1 cut(s)	912
BspOI	GCTAGC	1 cut(s)	1418
BspPI	GGATC	1 cut(s)	1721
BspT104I	TTCGAA	2 cut(s)	404, 1210
BspT107I	GGYRCC	1 cut(s)	751
BspTNI	GGTCTC	1 cut(s)	151
BsrDI	GCAATG	2 cut(s)	138, 1831
BsrFI	RCCGGY	1 cut(s)	268
BsrGI	TGTACA	1 cut(s)	892
BsrI	ACTGG	1 cut(s)	934
BssAI	RCCGGY	1 cut(s)	268
BssECI	CCNNGG	1 cut(s)	396
BssMI	GATC	3 cut(s)	681, 1713, 1871
BssT1I	CCWWGG	1 cut(s)	396
Bst4CI	ACNGT	1 cut(s)	254
Bst6I	CTCTTC	2 cut(s)	711, 952
BstAUI	TGTACA	1 cut(s)	892
BstBAI	YACGTR	3 cut(s)	1191, 1217, 1249
BstBI	TTCGAA	2 cut(s)	404, 1210
BstC8I	GCNNGC	2 cut(s)	1416, 1640
BstDEI	CTNAG	4 cut(s)	638, 653, 1034, 1419
BstDSI	CCRYGG	1 cut(s)	396
BstF5I	GGATG	2 cut(s)	762, 884
BstFNI	CGCG	1 cut(s)	1270
BstKTI	GATC	3 cut(s)	684, 1716, 1874
BstMAI	GTCTC	3 cut(s)	151, 361, 776
BstMBI	GATC	3 cut(s)	681, 1713, 1871
BstMWI	GCNNNNNNNGC	4 cut(s)	174, 454, 1252, 1420
BstSLI	GKGCMC	2 cut(s)	756, 1528
BstUI	CGCG	1 cut(s)	1270
BstX2I	RGATCY	2 cut(s)	1713, 1871
BstYI	RGATCY	2 cut(s)	1713, 1871
BsuRI	GGCC	1 cut(s)	1255
BtgI	CCRYGG	1 cut(s)	396
BtsCI	GGATG	2 cut(s)	762, 884
BveI	ACCTGC	1 cut(s)	912
Cac8I	GCNNGC	2 cut(s)	1416, 1640
CaiI	CAGNNNCTG	1 cut(s)	637
Cfr10I	RCCGGY	1 cut(s)	268
Cfr13I	GGNCC	1 cut(s)	728
CseI	GACGC	1 cut(s)	1729
Csp6I	GTAC	7 cut(s)	5, 291, 893, 1342, 1479, 1745, 1806
CviAII	CATG	7 cut(s)	397, 661, 868, 1162, 1294, 1385, 1789
CviQI	GTAC	7 cut(s)	5, 291, 893, 1342, 1479, 1745, 1806
DdeI	CTNAG	4 cut(s)	638, 653, 1034, 1419
DpnI	GATC	3 cut(s)	683, 1715, 1873
DpnII	GATC	3 cut(s)	681, 1713, 1871
DraIII	CACNNNGTG	1 cut(s)	856
EaeI	YGGCCR	1 cut(s)	1253
Eam1104I	CTCTTC	2 cut(s)	711, 952
EarI	CTCTTC	2 cut(s)	711, 952
Eco130I	CCWWGG	1 cut(s)	396
Eco31I	GGTCTC	1 cut(s)	151
Eco32I	GATATC	1 cut(s)	802
Eco47I	GGWCC	1 cut(s)	728
Eco57I	CTGAAG	1 cut(s)	764
Eco72I	CACGTG	2 cut(s)	1191, 1249
EcoRV	GATATC	1 cut(s)	802
EcoT14I	CCWWGG	1 cut(s)	396
EcoT22I	ATGCAT	2 cut(s)	592, 612
ErhI	CCWWGG	1 cut(s)	396
Esp3I	CGTCTC	1 cut(s)	776
FaeI	CATG	7 cut(s)	400, 664, 871, 1165, 1297, 1388, 1792
FaqI	GGGAC	2 cut(s)	671, 681
FatI	CATG	7 cut(s)	396, 660, 867, 1161, 1293, 1384, 1788
FauNDI	CATATG	2 cut(s)	592, 1537
FbaI	TGATCA	1 cut(s)	681
FblI	GTMKAC	2 cut(s)	1219, 1826
FokI	GGATG	2 cut(s)	749, 891
FspBI	CTAG	3 cut(s)	572, 1415, 1875
GsaI	CCCAGC	1 cut(s)	125
HaeIII	GGCC	1 cut(s)	1255
HapII	CCGG	1 cut(s)	269
HgaI	GACGC	1 cut(s)	1729
Hin1II	CATG	7 cut(s)	400, 664, 871, 1165, 1297, 1388, 1792
HincII	GTYRAC	2 cut(s)	157, 927
HindII	GTYRAC	2 cut(s)	157, 927
HinfI	GANTC	7 cut(s)	281, 320, 379, 401, 527, 1353, 1676
HpaII	CCGG	1 cut(s)	269
HphI	GGTGA	4 cut(s)	8, 214, 842, 1247
Hpy166II	GTNNAC	4 cut(s)	157, 927, 1220, 1827
Hpy188I	TCNGA	5 cut(s)	325, 633, 776, 824, 1516
Hpy188III	TCNNGA	1 cut(s)	647
Hpy8I	GTNNAC	4 cut(s)	157, 927, 1220, 1827
Hpy99I	CGWCG	2 cut(s)	1026, 1745
HpyAV	CCTTC	5 cut(s)	554, 614, 739, 741, 1120
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4IV	ACGT	6 cut(s)	769, 1190, 1216, 1239, 1248, 1532
HpyF10VI	GCNNNNNNNGC	4 cut(s)	174, 454, 1252, 1420
HpyF3I	CTNAG	4 cut(s)	638, 653, 1034, 1419
HpySE526I	ACGT	6 cut(s)	769, 1190, 1216, 1239, 1248, 1532
Hsp92II	CATG	7 cut(s)	400, 664, 871, 1165, 1297, 1388, 1792
Ksp22I	TGATCA	1 cut(s)	681
Kzo9I	GATC	3 cut(s)	681, 1713, 1871
LmnI	GCTCC	2 cut(s)	568, 1187
LweI	GCATC	4 cut(s)	597, 652, 771, 1840
MaeI	CTAG	3 cut(s)	572, 1415, 1875
MaeII	ACGT	6 cut(s)	769, 1190, 1216, 1239, 1248, 1532
MaeIII	GTNAC	4 cut(s)	499, 812, 1193, 1235
MalI	GATC	3 cut(s)	683, 1715, 1873
MboI	GATC	3 cut(s)	681, 1713, 1871
MboII	GAAGA	5 cut(s)	302, 473, 698, 939, 1309
MfeI	CAATTG	2 cut(s)	1152, 1324
MflI	RGATCY	2 cut(s)	1713, 1871
MhlI	GDGCHC	4 cut(s)	434, 756, 1248, 1528
MlsI	TGGCCA	1 cut(s)	1255
MluI	ACGCGT	1 cut(s)	1268
MluNI	TGGCCA	1 cut(s)	1255
MlyI	GAGTC	1 cut(s)	373
MmeI	TCCRAC	5 cut(s)	220, 449, 546, 790, 1253
Mox20I	TGGCCA	1 cut(s)	1255
Mph1103I	ATGCAT	2 cut(s)	592, 612
MscI	TGGCCA	1 cut(s)	1255
MslI	CAYNNNNRTG	2 cut(s)	395, 872
Msp20I	TGGCCA	1 cut(s)	1255
MspA1I	CMGCKG	1 cut(s)	125
MspI	CCGG	1 cut(s)	269
MunI	CAATTG	2 cut(s)	1152, 1324
MvnI	CGCG	1 cut(s)	1270
MwoI	GCNNNNNNNGC	4 cut(s)	174, 454, 1252, 1420
NcoI	CCATGG	1 cut(s)	396
NdeI	CATATG	2 cut(s)	592, 1537
NdeII	GATC	3 cut(s)	681, 1713, 1871
NheI	GCTAGC	1 cut(s)	1414
NlaIII	CATG	7 cut(s)	400, 664, 871, 1165, 1297, 1388, 1792
NlaIV	GGNNCC	2 cut(s)	753, 1310
NmuCI	GTSAC	2 cut(s)	1193, 1235
NsiI	ATGCAT	2 cut(s)	592, 612
NspV	TTCGAA	2 cut(s)	404, 1210
PcsI	WCGNNNNNNNCGW	1 cut(s)	1245
PfeI	GAWTC	6 cut(s)	281, 320, 401, 527, 1353, 1676
PleI	GAGTC	1 cut(s)	373
PmaCI	CACGTG	2 cut(s)	1191, 1249
PmlI	CACGTG	2 cut(s)	1191, 1249
PpsI	GAGTC	1 cut(s)	373
Ppu21I	YACGTR	3 cut(s)	1191, 1217, 1249
PshBI	ATTAAT	2 cut(s)	1725, 1845
PsiI	TTATAA	2 cut(s)	1754, 1882
PspCI	CACGTG	2 cut(s)	1191, 1249
PspFI	CCCAGC	1 cut(s)	121
PspN4I	GGNNCC	2 cut(s)	753, 1310
PspPI	GGNCC	1 cut(s)	728
PstNI	CAGNNNCTG	1 cut(s)	637
PsuI	RGATCY	2 cut(s)	1713, 1871
PvuII	CAGCTG	1 cut(s)	125
RsaI	GTAC	7 cut(s)	6, 292, 894, 1343, 1480, 1746, 1807
RsaNI	GTAC	7 cut(s)	5, 291, 893, 1342, 1479, 1745, 1806
RseI	CAYNNNNRTG	2 cut(s)	395, 872
Sau3AI	GATC	3 cut(s)	681, 1713, 1871
Sau96I	GGNCC	1 cut(s)	728
SchI	GAGTC	1 cut(s)	373
SduI	GDGCHC	4 cut(s)	434, 756, 1248, 1528
SfaNI	GCATC	4 cut(s)	597, 652, 771, 1840
SfuI	TTCGAA	2 cut(s)	404, 1210
SinI	GGWCC	1 cut(s)	728
SmiMI	CAYNNNNRTG	2 cut(s)	395, 872
SsiI	CCGC	2 cut(s)	97, 805
SspI	AATATT	1 cut(s)	1864
SspMI	CTAG	3 cut(s)	572, 1415, 1875
StyI	CCWWGG	1 cut(s)	396
TaaI	ACNGT	1 cut(s)	254
TaiI	ACGT	6 cut(s)	772, 1193, 1219, 1242, 1251, 1535
TaqI	TCGA	3 cut(s)	235, 404, 1210
TatI	WGTACW	3 cut(s)	892, 1341, 1805
TfiI	GAWTC	6 cut(s)	281, 320, 401, 527, 1353, 1676
TseFI	GTSAC	2 cut(s)	1193, 1235
Tsp45I	GTSAC	2 cut(s)	1193, 1235
VpaK11BI	GGWCC	1 cut(s)	728
VspI	ATTAAT	2 cut(s)	1725, 1845
XapI	RAATTY	6 cut(s)	673, 1046, 1199, 1449, 1501, 1612
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1300
XmiI	GTMKAC	2 cut(s)	1219, 1826
XspI	CTAG	3 cut(s)	572, 1415, 1875
Zsp2I	ATGCAT	2 cut(s)	592, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.