Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

18431883 .. 18433838

Gene Structure 1956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGAGGGTCAGCGGACAGCGCTGTTGAAATGCCAGCGAATTGGCTGCAACGCCATGTTTTCCGACGACGACAATCCTGAAGGTTCCTGTCAATACCATGATTCGCCTATATTTCATGATGGGATTAAAGAGTGGAGTTGTTGCAAGAAAAGAAGTCATGATTTCACCTTATTTTTAGAATTACCAGGATGTAAGACAGGTAAACACACAACAGAGAAACCAGTGTTGGCGAAGCCGAAGCCTAAGGCTCCTGTTCCTGCTCCTACTGCAGCTCCTGCTACTGATGCATTGTCAAAACAGTCCTGCTCTAGGTGTCGCCAGGGTTTTTTCTGTTCGGAACATGGTGCACAAGCCAAAGAACTAAAATCAAAGCCTGTAAATGTGGAAACAACTCCAATTCCAGAAAGCATTACTGATCGATCAAGGCACTTCTGCTCCACCGAAAAAGATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0002679 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009814 GO:0009816 GO:0009817 GO:0009987 GO:0012501 GO:0017016 GO:0017048 GO:0019899 GO:0031072 GO:0031267 GO:0031647 GO:0033554 GO:0034050 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0045730 GO:0046872 GO:0046914 GO:0050821 GO:0050832 GO:0050896 GO:0051020 GO:0051704 GO:0051707 GO:0051716 GO:0051879 GO:0065007 GO:0065008 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

CHORD

Protein Analysis

152

Amino Acids

16.68

Weight (kDa)

8.28

Isoelectric Point (pI)

46.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CHORD	PF04968	10 - 69	2e-22	CHORD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	13
AcuI	CTGAAG	1 cut(s)	99
AfeI	AGCGCT	1 cut(s)	21
AfiI	CCNNNNNNNGG	1 cut(s)	309
AgsI	TTSAA	1 cut(s)	28
AjnI	CCWGG	2 cut(s)	184, 318
AjuI	GAANNNNNNNTTGG	2 cut(s)	209, 241
AluBI	AGCT	1 cut(s)	272
AluI	AGCT	1 cut(s)	272
Alw21I	GWGCWC	1 cut(s)	349
Alw44I	GTGCAC	1 cut(s)	345
AlwNI	CAGNNNCTG	1 cut(s)	275
Aor51HI	AGCGCT	1 cut(s)	21
ApaLI	GTGCAC	1 cut(s)	345
ApeKI	GCWGC	2 cut(s)	45, 269
AspLEI	GCGC	1 cut(s)	22
AsuHPI	GGTGA	1 cut(s)	157
AxyI	CCTNAGG	1 cut(s)	243
BaeGI	GKGCMC	1 cut(s)	349
Bbv12I	GWGCWC	1 cut(s)	349
BbvI	GCAGC	2 cut(s)	32, 281
BccI	CCATC	1 cut(s)	113
BcgI	CGANNNNNNTGC	2 cut(s)	27, 61
BciT130I	CCWGG	2 cut(s)	186, 320
BfaI	CTAG	1 cut(s)	309
BfmI	CTRYAG	1 cut(s)	267
BfoI	RGCGCY	1 cut(s)	23
BisI	GCNGC	2 cut(s)	46, 270
BlsI	GCNGC	2 cut(s)	47, 271
Bme1390I	CCNGG	2 cut(s)	186, 320
BmiI	GGNNCC	2 cut(s)	85, 249
BmrFI	CCNGG	2 cut(s)	186, 320
BmsI	GCATC	1 cut(s)	274
Bsa29I	ATCGAT	1 cut(s)	418
BsaJI	CCNNGG	1 cut(s)	319
BsaXI	ACNNNNNCTCC	4 cut(s)	256, 286, 419, 449
Bsc4I	CCNNNNNNNGG	1 cut(s)	309
Bse1I	ACTGG	1 cut(s)	221
Bse21I	CCTNAGG	1 cut(s)	243
BseBI	CCWGG	2 cut(s)	186, 320
BseCI	ATCGAT	1 cut(s)	418
BseDI	CCNNGG	1 cut(s)	319
BseGI	GGATG	1 cut(s)	194
BseLI	CCNNNNNNNGG	1 cut(s)	309
BseNI	ACTGG	1 cut(s)	221
BseSI	GKGCMC	1 cut(s)	349
BseXI	GCAGC	2 cut(s)	32, 281
BshVI	ATCGAT	1 cut(s)	418
BsiHKAI	GWGCWC	1 cut(s)	349
BslI	CCNNNNNNNGG	1 cut(s)	309
Bsp1286I	GDGCHC	1 cut(s)	349
Bsp143I	GATC	2 cut(s)	415, 419
BspACI	CCGC	1 cut(s)	13
BspDI	ATCGAT	1 cut(s)	418
BspHI	TCATGA	2 cut(s)	115, 157
BspLI	GGNNCC	2 cut(s)	85, 249
BspMAI	CTGCAG	1 cut(s)	271
BsrI	ACTGG	1 cut(s)	221
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	2 cut(s)	415, 419
Bst2UI	CCWGG	2 cut(s)	186, 320
Bst4CI	ACNGT	1 cut(s)	300
BstAPI	GCANNNNNTGC	1 cut(s)	275
BstC8I	GCNNGC	1 cut(s)	35
BstDEI	CTNAG	1 cut(s)	243
BstENI	CCTNNNNNAGG	1 cut(s)	307
BstF5I	GGATG	1 cut(s)	194
BstH2I	RGCGCY	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	22
BstKTI	GATC	2 cut(s)	418, 422
BstMBI	GATC	2 cut(s)	415, 419
BstMWI	GCNNNNNNNGC	4 cut(s)	19, 266, 275, 284
BstNI	CCWGG	2 cut(s)	186, 320
BstSCI	CCNGG	2 cut(s)	184, 318
BstSFI	CTRYAG	1 cut(s)	267
BstSLI	GKGCMC	1 cut(s)	349
BstV1I	GCAGC	2 cut(s)	32, 281
BstXI	CCANNNNNNTGG	1 cut(s)	41
Bsu15I	ATCGAT	1 cut(s)	418
Bsu36I	CCTNAGG	1 cut(s)	243
BsuTUI	ATCGAT	1 cut(s)	418
BtsCI	GGATG	1 cut(s)	194
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	1 cut(s)	35
CaiI	CAGNNNCTG	1 cut(s)	275
CciI	TCATGA	2 cut(s)	115, 157
CfoI	GCGC	1 cut(s)	22
ClaI	ATCGAT	1 cut(s)	418
CviAII	CATG	5 cut(s)	55, 98, 116, 158, 341
CviJI	RGCY	7 cut(s)	45, 235, 241, 248, 272, 353, 373
CviKI_1	RGCY	7 cut(s)	45, 235, 241, 248, 272, 353, 373
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	2 cut(s)	417, 421
DpnII	GATC	2 cut(s)	415, 419
Eco47III	AGCGCT	1 cut(s)	21
Eco57I	CTGAAG	1 cut(s)	99
Eco81I	CCTNAGG	1 cut(s)	243
EcoNI	CCTNNNNNAGG	1 cut(s)	307
EcoRII	CCWGG	2 cut(s)	184, 318
EcoT22I	ATGCAT	1 cut(s)	289
FaeI	CATG	5 cut(s)	58, 101, 119, 161, 344
FaiI	YATR	6 cut(s)	56, 99, 110, 117, 159, 342
FatI	CATG	5 cut(s)	54, 97, 115, 157, 340
Fnu4HI	GCNGC	2 cut(s)	46, 270
FokI	GGATG	1 cut(s)	201
Fsp4HI	GCNGC	2 cut(s)	46, 270
FspBI	CTAG	1 cut(s)	309
GlaI	GCGC	1 cut(s)	21
GluI	GCNGC	2 cut(s)	46, 270
HaeII	RGCGCY	1 cut(s)	23
HhaI	GCGC	1 cut(s)	22
Hin1II	CATG	5 cut(s)	58, 101, 119, 161, 344
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HinfI	GANTC	1 cut(s)	101
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	2 cut(s)	203, 347
Hpy188I	TCNGA	2 cut(s)	64, 337
Hpy188III	TCNNGA	4 cut(s)	77, 116, 158, 401
Hpy8I	GTNNAC	2 cut(s)	203, 347
Hpy99I	CGWCG	2 cut(s)	68, 71
HpyAV	CCTTC	1 cut(s)	74
HpyCH4III	ACNGT	1 cut(s)	300
HpyCH4V	TGCA	5 cut(s)	48, 144, 269, 287, 347
HpyF10VI	GCNNNNNNNGC	4 cut(s)	19, 266, 275, 284
HpyF3I	CTNAG	1 cut(s)	243
Hsp92II	CATG	5 cut(s)	58, 101, 119, 161, 344
HspAI	GCGC	1 cut(s)	20
Kzo9I	GATC	2 cut(s)	415, 419
LmnI	GCTCC	4 cut(s)	253, 265, 277, 440
Lsp1109I	GCAGC	2 cut(s)	32, 281
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	1 cut(s)	309
MalI	GATC	2 cut(s)	417, 421
MboI	GATC	2 cut(s)	415, 419
MhlI	GDGCHC	1 cut(s)	349
MluCI	AATT	3 cut(s)	39, 179, 396
MmeI	TCCRAC	1 cut(s)	87
Mph1103I	ATGCAT	1 cut(s)	289
MseI	TTAA	1 cut(s)	126
MspA1I	CMGCKG	1 cut(s)	13
MspR9I	CCNGG	2 cut(s)	186, 320
MvaI	CCWGG	2 cut(s)	186, 320
MwoI	GCNNNNNNNGC	4 cut(s)	19, 266, 275, 284
NdeII	GATC	2 cut(s)	415, 419
NlaIII	CATG	5 cut(s)	58, 101, 119, 161, 344
NlaIV	GGNNCC	2 cut(s)	85, 249
NsiI	ATGCAT	1 cut(s)	289
PagI	TCATGA	2 cut(s)	115, 157
PfeI	GAWTC	1 cut(s)	101
PkrI	GCNGC	2 cut(s)	47, 271
Psp6I	CCWGG	2 cut(s)	184, 318
PspGI	CCWGG	2 cut(s)	184, 318
PspN4I	GGNNCC	2 cut(s)	85, 249
PstI	CTGCAG	1 cut(s)	271
PstNI	CAGNNNCTG	1 cut(s)	275
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	2 cut(s)	46, 270
Sau3AI	GATC	2 cut(s)	415, 419
ScrFI	CCNGG	2 cut(s)	186, 320
SduI	GDGCHC	1 cut(s)	349
SetI	ASST	5 cut(s)	85, 170, 202, 274, 314
SfaNI	GCATC	1 cut(s)	274
SfcI	CTRYAG	1 cut(s)	267
Sse9I	AATT	3 cut(s)	39, 179, 396
SsiI	CCGC	1 cut(s)	13
SspMI	CTAG	1 cut(s)	309
StyD4I	CCNGG	2 cut(s)	184, 318
TaaI	ACNGT	1 cut(s)	300
TaqI	TCGA	1 cut(s)	418
TasI	AATT	3 cut(s)	39, 179, 396
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	1 cut(s)	228
TseI	GCWGC	2 cut(s)	45, 269
TspDTI	ATGAA	1 cut(s)	104
TspRI	CASTG	1 cut(s)	228
VneI	GTGCAC	1 cut(s)	345
XagI	CCTNNNNNAGG	1 cut(s)	307
XspI	CTAG	1 cut(s)	309
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.