pycom01g20070

RESISTANCE protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Forward (+)
18520107 .. 18521273
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1167 bp
ATGGGGAATCTATCAGGGTTATATTTAGATAGCACTGCCATTAAAGAACTGCCTTCGTCAATTAACAAACTCACGGGCCTTTCTGTTTTGAACCTATCTTGGTGTCGAGAACTCAAGAGCCTGCCCAGCAGCATTTATATGGGATCTCTTCAAATCCTTAATCTTTCTGGTTGCTCAAACCTTGAGGAGCTTCCAGAGATTTTAGATATTATTGAAAATCTATCAGCGTTATATTTAGATGGGACTGCCATTAAAGAACTGCCTTCGTCAATTAATAAACTCATGGGCCCTATTGTTTTGAACCTATCTGGGTGTCAAGAACTCAAGAGCCTGACAAGCATCATTCATGTGGGATCTCTTCAAACCCTTTATCTTTCTGGTTGCTCAAACTTTGAGGAGTTTCCAGATACTTCAGATGTTATGGAGAAGCTATCAAACCTTTATTTAGGTGGGACTGCCATTAAAGAACTGCCTTCATCAATTAATAAACTCACGGGCCTTACTGTTTTGGACCTATCGGGGTGTCGAAAACTCAAGAGCCTGCCGAGCAGCATTCATATGGGATCTCTTCTAACCCTTAATCTTTCTGGTTGCTCAAACTTGGAGAAGTTTCCTGATATTTCAGATGTTATGGAAAAGCTATCACAGCTTTATTTAGATGGGACTGCGATTAAGGAACTGCCTTCGTCAATTAATAAACTCACCGGCCTTACGCATTTGCACCTATCTGGGTGTCAAGAACTCAATAGCCTGCCAAGCAGCATTCACATAGGATCTCTTCGAACCCTTGATCTTTCTGGTTGCTCAAACCTTGAGAAGTTTCCAGAGATTTCAGATTCTATGGAGAATCTATCAGAGTTATATTTAGATGGGACTGCCATTAAAGAACTACCTTCGTCAATTAACAAACTGACGGGCCTTACTGTTTTGGACCTATTTGGGTGTCAAGAACTCAAGAGCCTGCCAAGCAGCATTCATATGGGATCTCTTCAAACCCTTAATCTTTCTGGTTGCTCAAACCTTGAGAAGTTTCCAGAGATTTCAGATGCTATGGAGAATCTATCAGAGTTATACTTAGATGGGACTGCAATTAAGGAACTGCCGTCGTCAATTAGTAAACTCACGGGCCTTACTGTTTTGGAAATCTTCCAGCGCTTGTTACGTTGA

Protein Analysis

389

Amino Acids

41.93

Weight (kDa)

4.83

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_13 PF23286 7 - 47 1.2e-06 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_13 PF23286 47 - 129 8.1e-09 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_13 PF23286 118 - 199 1.3e-13 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 120 - 217 1.9e-07 Leucine-rich repeat region
LRR_14 PF23598 167 - 287 1.2e-08 Leucine-rich repeat region
LRR_13 PF23286 188 - 256 3.8e-11 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_EndoS PF23952 216 - 274 4.5e-06 Endo-beta-N-acetylglucosaminidase EndoS LRR domain
LRR_14 PF23598 250 - 382 7e-12 Leucine-rich repeat region
LRR_13 PF23286 258 - 327 2.7e-13 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_13 PF23286 328 - 382 1.3e-09 Disease resistance protein RPS4B-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 5 cut(s) 151, 361, 571, 781, 991
AcuI CTGAAG 1 cut(s) 396
AfeI AGCGCT 1 cut(s) 1154
AgsI TTSAA 6 cut(s) 91, 152, 215, 301, 362, 992
AluBI AGCT 4 cut(s) 190, 430, 640, 649
AluI AGCT 4 cut(s) 190, 430, 640, 649
AlwI GGATC 5 cut(s) 151, 361, 571, 781, 991
Aor51HI AGCGCT 1 cut(s) 1154
AoxI GGCC 6 cut(s) 76, 286, 496, 706, 916, 1126
ApaI GGGCCC 1 cut(s) 290
ApeKI GCWGC 4 cut(s) 129, 549, 759, 969
AseI ATTAAT 3 cut(s) 273, 483, 693
AspLEI GCGC 1 cut(s) 1155
AspS9I GGNCC 8 cut(s) 76, 286, 287, 496, 511, 916, 931, 1126
AsuHPI GGTGA 1 cut(s) 694
AsuII TTCGAA 1 cut(s) 781
AvaII GGWCC 2 cut(s) 511, 931
BaeGI GKGCMC 1 cut(s) 290
BanII GRGCYC 1 cut(s) 290
BbvI GCAGC 4 cut(s) 141, 561, 771, 981
BccI CCATC 4 cut(s) 233, 653, 863, 1073
BceAI ACGGC 1 cut(s) 1087
BfoI RGCGCY 1 cut(s) 1156
BisI GCNGC 4 cut(s) 130, 550, 760, 970
BlsI GCNGC 4 cut(s) 131, 551, 761, 971
Bme18I GGWCC 2 cut(s) 511, 931
BmgT120I GGNCC 8 cut(s) 76, 286, 287, 496, 511, 916, 931, 1126
BmiI GGNNCC 1 cut(s) 288
BmsI GCATC 2 cut(s) 348, 1036
Bpu14I TTCGAA 1 cut(s) 781
BpuEI CTTGAG 7 cut(s) 98, 203, 308, 518, 833, 938, 1043
Bse118I RCCGGY 1 cut(s) 704
BseRI GAGGAG 2 cut(s) 200, 410
BseSI GKGCMC 1 cut(s) 290
BseXI GCAGC 4 cut(s) 141, 561, 771, 981
BseYI CCCAGC 1 cut(s) 125
BshFI GGCC 6 cut(s) 78, 288, 498, 708, 918, 1128
BsiSI CCGG 1 cut(s) 705
BslFI GGGAC 5 cut(s) 256, 466, 676, 886, 1096
BsmFI GGGAC 5 cut(s) 256, 466, 676, 886, 1096
BsmI GAATGC 3 cut(s) 552, 762, 972
BsnI GGCC 6 cut(s) 78, 288, 498, 708, 918, 1128
Bsp119I TTCGAA 1 cut(s) 781
Bsp120I GGGCCC 1 cut(s) 286
Bsp1286I GDGCHC 1 cut(s) 290
Bsp143I GATC 6 cut(s) 143, 353, 563, 773, 790, 983
BspANI GGCC 6 cut(s) 78, 288, 498, 708, 918, 1128
BspLI GGNNCC 1 cut(s) 288
BspPI GGATC 5 cut(s) 151, 361, 571, 781, 991
BspT104I TTCGAA 1 cut(s) 781
BsrFI RCCGGY 1 cut(s) 704
BssAI RCCGGY 1 cut(s) 704
BssMI GATC 6 cut(s) 143, 353, 563, 773, 790, 983
Bst4CI ACNGT 3 cut(s) 505, 925, 1135
Bst6I CTCTTC 5 cut(s) 153, 363, 573, 783, 993
BstBI TTCGAA 1 cut(s) 781
BstC8I GCNNGC 4 cut(s) 122, 542, 752, 962
BstDEI CTNAG 1 cut(s) 1075
BstH2I RGCGCY 1 cut(s) 1156
BstHHI GCGC 1 cut(s) 1155
BstKTI GATC 6 cut(s) 146, 356, 566, 776, 793, 986
BstMBI GATC 6 cut(s) 143, 353, 563, 773, 790, 983
BstMWI GCNNNNNNNGC 6 cut(s) 126, 336, 546, 646, 756, 966
BstSLI GKGCMC 1 cut(s) 290
BstV1I GCAGC 4 cut(s) 141, 561, 771, 981
BstX2I RGATCY 5 cut(s) 143, 353, 563, 773, 983
BstYI RGATCY 5 cut(s) 143, 353, 563, 773, 983
BsuRI GGCC 6 cut(s) 78, 288, 498, 708, 918, 1128
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 1 cut(s) 33
Cac8I GCNNGC 4 cut(s) 122, 542, 752, 962
CfoI GCGC 1 cut(s) 1155
Cfr10I RCCGGY 1 cut(s) 704
Cfr13I GGNCC 8 cut(s) 76, 286, 287, 496, 511, 916, 931, 1126
CviAII CATG 2 cut(s) 283, 347
DdeI CTNAG 1 cut(s) 1075
DpnI GATC 6 cut(s) 145, 355, 565, 775, 792, 985
DpnII GATC 6 cut(s) 143, 353, 563, 773, 790, 983
Eam1104I CTCTTC 5 cut(s) 153, 363, 573, 783, 993
EarI CTCTTC 5 cut(s) 153, 363, 573, 783, 993
Eco24I GRGCYC 1 cut(s) 290
Eco47I GGWCC 2 cut(s) 511, 931
Eco47III AGCGCT 1 cut(s) 1154
Eco57I CTGAAG 1 cut(s) 396
EcoO109I RGGNCCY 1 cut(s) 287
EcoT38I GRGCYC 1 cut(s) 290
FaeI CATG 2 cut(s) 286, 350
FaqI GGGAC 5 cut(s) 256, 466, 676, 886, 1096
FatI CATG 2 cut(s) 282, 346
FauNDI CATATG 2 cut(s) 558, 978
Fnu4HI GCNGC 4 cut(s) 130, 550, 760, 970
FriOI GRGCYC 1 cut(s) 290
Fsp4HI GCNGC 4 cut(s) 130, 550, 760, 970
GlaI GCGC 1 cut(s) 1154
GluI GCNGC 4 cut(s) 130, 550, 760, 970
GsaI CCCAGC 1 cut(s) 129
HaeII RGCGCY 1 cut(s) 1156
HaeIII GGCC 6 cut(s) 78, 288, 498, 708, 918, 1128
HapII CCGG 1 cut(s) 705
HhaI GCGC 1 cut(s) 1155
Hin1II CATG 2 cut(s) 286, 350
Hin6I GCGC 1 cut(s) 1153
HinP1I GCGC 1 cut(s) 1153
HinfI GANTC 4 cut(s) 7, 836, 847, 1057
HpaII CCGG 1 cut(s) 705
HphI GGTGA 1 cut(s) 694
Hpy166II GTNNAC 1 cut(s) 1118
Hpy188I TCNGA 6 cut(s) 415, 625, 835, 856, 1045, 1066
Hpy8I GTNNAC 1 cut(s) 1118
Hpy99I CGWCG 1 cut(s) 1108
HpyAV CCTTC 5 cut(s) 63, 273, 483, 693, 903
HpyCH4III ACNGT 3 cut(s) 505, 925, 1135
HpyCH4IV ACGT 1 cut(s) 1162
HpyCH4V TGCA 2 cut(s) 721, 1088
HpyF10VI GCNNNNNNNGC 6 cut(s) 126, 336, 546, 646, 756, 966
HpyF3I CTNAG 1 cut(s) 1075
HpySE526I ACGT 1 cut(s) 1162
Hsp92II CATG 2 cut(s) 286, 350
HspAI GCGC 1 cut(s) 1153
Kzo9I GATC 6 cut(s) 143, 353, 563, 773, 790, 983
LmnI GCTCC 1 cut(s) 187
Lsp1109I GCAGC 4 cut(s) 141, 561, 771, 981
LweI GCATC 2 cut(s) 348, 1036
MaeII ACGT 1 cut(s) 1162
MaeIII GTNAC 1 cut(s) 1158
MalI GATC 6 cut(s) 145, 355, 565, 775, 792, 985
MboI GATC 6 cut(s) 143, 353, 563, 773, 790, 983
MboII GAAGA 6 cut(s) 140, 350, 560, 770, 980, 1138
MflI RGATCY 5 cut(s) 143, 353, 563, 773, 983
MhlI GDGCHC 1 cut(s) 290
MluCI AATT 7 cut(s) 60, 270, 480, 690, 900, 1089, 1110
MnlI CCTC 2 cut(s) 178, 388
MslI CAYNNNNRTG 4 cut(s) 137, 347, 557, 977
MspI CCGG 1 cut(s) 705
Mva1269I GAATGC 3 cut(s) 552, 762, 972
MwoI GCNNNNNNNGC 6 cut(s) 126, 336, 546, 646, 756, 966
NdeI CATATG 2 cut(s) 558, 978
NdeII GATC 6 cut(s) 143, 353, 563, 773, 790, 983
NlaIII CATG 2 cut(s) 286, 350
NlaIV GGNNCC 1 cut(s) 288
NmeAIII GCCGAG 1 cut(s) 570
NspV TTCGAA 1 cut(s) 781
PctI GAATGC 3 cut(s) 552, 762, 972
PfeI GAWTC 4 cut(s) 7, 836, 847, 1057
PkrI GCNGC 4 cut(s) 131, 551, 761, 971
PshBI ATTAAT 3 cut(s) 273, 483, 693
PspFI CCCAGC 1 cut(s) 125
PspN4I GGNNCC 1 cut(s) 288
PspOMI GGGCCC 1 cut(s) 286
PspPI GGNCC 8 cut(s) 76, 286, 287, 496, 511, 916, 931, 1126
PsuI RGATCY 5 cut(s) 143, 353, 563, 773, 983
RseI CAYNNNNRTG 4 cut(s) 137, 347, 557, 977
SatI GCNGC 4 cut(s) 130, 550, 760, 970
Sau3AI GATC 6 cut(s) 143, 353, 563, 773, 790, 983
Sau96I GGNCC 8 cut(s) 76, 286, 287, 496, 511, 916, 931, 1126
SduI GDGCHC 1 cut(s) 290
SfaNI GCATC 2 cut(s) 348, 1036
SfuI TTCGAA 1 cut(s) 781
SinI GGWCC 2 cut(s) 511, 931
SmiMI CAYNNNNRTG 4 cut(s) 137, 347, 557, 977
SmlI CTYRAG 7 cut(s) 113, 182, 323, 533, 812, 953, 1022
SmoI CTYRAG 7 cut(s) 113, 182, 323, 533, 812, 953, 1022
Sse9I AATT 7 cut(s) 60, 270, 480, 690, 900, 1089, 1110
TaaI ACNGT 3 cut(s) 505, 925, 1135
TaiI ACGT 1 cut(s) 1165
TaqI TCGA 3 cut(s) 106, 526, 781
TasI AATT 7 cut(s) 60, 270, 480, 690, 900, 1089, 1110
TfiI GAWTC 4 cut(s) 7, 836, 847, 1057
TscAI CASTG 1 cut(s) 40
TseI GCWGC 4 cut(s) 129, 549, 759, 969
TspDTI ATGAA 4 cut(s) 335, 465, 545, 965
TspRI CASTG 1 cut(s) 40
VpaK11BI GGWCC 2 cut(s) 511, 931
VspI ATTAAT 3 cut(s) 273, 483, 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.