pycom01g20670

Belongs to the eukaryotic ribosomal protein eS24 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Reverse (-)
19006950 .. 19007495
546 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 546 bp
ATGGTATACACACAAAATTACCAAATCGCCACCGACACTGGCTCCAATTTTCGATTACGAAACCCTAGATCTGCTTCTCTTCTTACAAAGAAACACCAAGTCAACAGAGAAAACGAGAAAAAGAGGGAGAGAGAGGTACCGTATGGAAACGAAGATGCGAAAGTTGGAAGGAAGGAGGGGTGGGAGAGCTCCGTGTGGACTAGGTATCTTCCGGTCGAATCAAAACCAACCATGGCGGACAAGGCAGTCACCATCCGAACCAAGAAGTTCATGACCAACCGCCTTCTCTCTCGCAAGCAATTCGTGAGCTCCTCCATAATTTCTTCCTTTTTGCATCTAGCATTAATTGGGTTTTGGATCTATAACTTGTGTGTGCATTTGTTAGTGGGTTTGAGCTGTTTTATTTCTTTAATTTTGTTAATTTTCTTTGTAAAGTTGCATACTTTAATCTGGATATGTGATTTTTCTTATGAAGCTGTTATTCGCCCAACTGGATTTTTAATTTTAATTTGGCTACCATTATTTTTCTGTGATTTTTCTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S24e

Protein Analysis

182

Amino Acids

21.13

Weight (kDa)

9.66

Isoelectric Point (pI)

24.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 245
Acc65I GGTACC 1 cut(s) 136
AccB1I GGYRCC 1 cut(s) 136
AccI GTMKAC 1 cut(s) 6
AciI CCGC 2 cut(s) 236, 280
AclWI GGATC 1 cut(s) 365
AfaI GTAC 1 cut(s) 138
AluBI AGCT 4 cut(s) 189, 309, 396, 476
AluI AGCT 4 cut(s) 189, 309, 396, 476
Alw21I GWGCWC 2 cut(s) 191, 311
AlwI GGATC 1 cut(s) 365
AseI ATTAAT 1 cut(s) 344
Asp718I GGTACC 1 cut(s) 136
AsuHPI GGTGA 1 cut(s) 241
BanI GGYRCC 1 cut(s) 136
BanII GRGCYC 2 cut(s) 191, 311
Bbv12I GWGCWC 2 cut(s) 191, 311
BccI CCATC 1 cut(s) 260
BcgI CGANNNNNNTGC 2 cut(s) 283, 317
BfaI CTAG 3 cut(s) 66, 201, 338
BglII AGATCT 1 cut(s) 68
BmiI GGNNCC 2 cut(s) 43, 138
BmsI GCATC 2 cut(s) 145, 343
BsaJI CCNNGG 1 cut(s) 231
BsaWI WCCGGW 1 cut(s) 211
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bse1I ACTGG 2 cut(s) 43, 496
BseDI CCNNGG 1 cut(s) 231
BseGI GGATG 1 cut(s) 252
BseNI ACTGG 2 cut(s) 43, 496
BseRI GAGGAG 1 cut(s) 301
Bsh1285I CGRYCG 1 cut(s) 216
BshNI GGYRCC 1 cut(s) 136
BsiEI CGRYCG 1 cut(s) 216
BsiHKAI GWGCWC 2 cut(s) 191, 311
BsiSI CCGG 1 cut(s) 212
Bsp1286I GDGCHC 2 cut(s) 191, 311
Bsp143I GATC 2 cut(s) 68, 357
Bsp19I CCATGG 1 cut(s) 231
BspACI CCGC 2 cut(s) 236, 280
BspHI TCATGA 1 cut(s) 270
BspLI GGNNCC 2 cut(s) 43, 138
BspPI GGATC 1 cut(s) 365
BspT107I GGYRCC 1 cut(s) 136
BsrI ACTGG 2 cut(s) 43, 496
BssECI CCNNGG 1 cut(s) 231
BssMI GATC 2 cut(s) 68, 357
BssNAI GTATAC 1 cut(s) 7
BssT1I CCWWGG 1 cut(s) 231
Bst1107I GTATAC 1 cut(s) 7
Bst4CI ACNGT 1 cut(s) 141
Bst6I CTCTTC 1 cut(s) 84
BstC8I GCNNGC 1 cut(s) 296
BstDSI CCRYGG 1 cut(s) 231
BstF5I GGATG 1 cut(s) 252
BstKTI GATC 2 cut(s) 71, 360
BstMBI GATC 2 cut(s) 68, 357
BstMCI CGRYCG 1 cut(s) 216
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstX2I RGATCY 2 cut(s) 68, 357
BstYI RGATCY 2 cut(s) 68, 357
BstZ17I GTATAC 1 cut(s) 7
BtgI CCRYGG 1 cut(s) 231
BtsCI GGATG 1 cut(s) 252
BtsIMutI CAGTG 1 cut(s) 36
Cac8I GCNNGC 1 cut(s) 296
CciI TCATGA 1 cut(s) 270
Csp6I GTAC 1 cut(s) 137
CviAII CATG 2 cut(s) 232, 271
CviJI RGCY 6 cut(s) 42, 189, 309, 396, 476, 514
CviKI_1 RGCY 6 cut(s) 42, 189, 309, 396, 476, 514
CviQI GTAC 1 cut(s) 137
DpnI GATC 2 cut(s) 70, 359
DpnII GATC 2 cut(s) 68, 357
DrdI GACNNNNNNGTC 1 cut(s) 245
DseDI GACNNNNNNGTC 1 cut(s) 245
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
EciI GGCGGA 1 cut(s) 251
Ecl136II GAGCTC 2 cut(s) 189, 309
Eco130I CCWWGG 1 cut(s) 231
Eco24I GRGCYC 2 cut(s) 191, 311
Eco53kI GAGCTC 2 cut(s) 189, 309
EcoICRI GAGCTC 2 cut(s) 189, 309
EcoT14I CCWWGG 1 cut(s) 231
EcoT38I GRGCYC 2 cut(s) 191, 311
ErhI CCWWGG 1 cut(s) 231
FaeI CATG 2 cut(s) 235, 274
FaiI YATR 9 cut(s) 7, 144, 233, 272, 317, 363, 441, 457, 471
FatI CATG 2 cut(s) 231, 270
FblI GTMKAC 1 cut(s) 6
FokI GGATG 1 cut(s) 239
FriOI GRGCYC 2 cut(s) 191, 311
FspBI CTAG 3 cut(s) 66, 201, 338
HapII CCGG 1 cut(s) 212
Hin1II CATG 2 cut(s) 235, 274
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 1 cut(s) 218
HpaII CCGG 1 cut(s) 212
HphI GGTGA 1 cut(s) 241
Hpy166II GTNNAC 3 cut(s) 7, 103, 198
Hpy188I TCNGA 1 cut(s) 257
Hpy188III TCNNGA 3 cut(s) 271, 304, 451
Hpy8I GTNNAC 3 cut(s) 7, 103, 198
HpyAV CCTTC 3 cut(s) 162, 166, 293
HpyCH4III ACNGT 1 cut(s) 141
HpyCH4V TGCA 3 cut(s) 334, 376, 439
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
Hsp92II CATG 2 cut(s) 235, 274
KpnI GGTACC 1 cut(s) 140
Kzo9I GATC 2 cut(s) 68, 357
LmnI GCTCC 3 cut(s) 47, 194, 314
LpnPI CCDG 4 cut(s) 24, 225, 436, 477
LweI GCATC 2 cut(s) 145, 343
MaeI CTAG 3 cut(s) 66, 201, 338
MaeIII GTNAC 1 cut(s) 247
MalI GATC 2 cut(s) 70, 359
MboI GATC 2 cut(s) 68, 357
MboII GAAGA 4 cut(s) 71, 164, 200, 315
MflI RGATCY 2 cut(s) 68, 357
MhlI GDGCHC 2 cut(s) 191, 311
MluCI AATT 9 cut(s) 16, 46, 299, 318, 345, 411, 420, 501, 507
MmeI TCCRAC 1 cut(s) 145
MnlI CCTC 4 cut(s) 117, 127, 169, 322
MseI TTAA 6 cut(s) 344, 410, 419, 446, 500, 506
MspI CCGG 1 cut(s) 212
MwoI GCNNNNNNNGC 1 cut(s) 242
NcoI CCATGG 1 cut(s) 231
NdeII GATC 2 cut(s) 68, 357
NlaIII CATG 2 cut(s) 235, 274
NlaIV GGNNCC 2 cut(s) 43, 138
NmuCI GTSAC 1 cut(s) 247
PagI TCATGA 1 cut(s) 270
PfeI GAWTC 1 cut(s) 218
PshBI ATTAAT 1 cut(s) 344
Psp124BI GAGCTC 2 cut(s) 191, 311
PspN4I GGNNCC 2 cut(s) 43, 138
PsuI RGATCY 2 cut(s) 68, 357
RsaI GTAC 1 cut(s) 138
RsaNI GTAC 1 cut(s) 137
SacI GAGCTC 2 cut(s) 191, 311
SaqAI TTAA 6 cut(s) 344, 410, 419, 446, 500, 506
Sau3AI GATC 2 cut(s) 68, 357
SduI GDGCHC 2 cut(s) 191, 311
SetI ASST 6 cut(s) 138, 191, 206, 311, 398, 478
SfaNI GCATC 2 cut(s) 145, 343
Sse9I AATT 9 cut(s) 16, 46, 299, 318, 345, 411, 420, 501, 507
SsiI CCGC 2 cut(s) 236, 280
SspMI CTAG 3 cut(s) 66, 201, 338
SstI GAGCTC 2 cut(s) 191, 311
StyI CCWWGG 1 cut(s) 231
TaaI ACNGT 1 cut(s) 141
TaqI TCGA 2 cut(s) 52, 216
TasI AATT 9 cut(s) 16, 46, 299, 318, 345, 411, 420, 501, 507
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 6 cut(s) 344, 410, 419, 446, 500, 506
Tru9I TTAA 6 cut(s) 344, 410, 419, 446, 500, 506
TscAI CASTG 1 cut(s) 43
TseFI GTSAC 1 cut(s) 247
Tsp45I GTSAC 1 cut(s) 247
TspDTI ATGAA 2 cut(s) 259, 486
TspGWI ACGGA 1 cut(s) 181
TspRI CASTG 1 cut(s) 43
VspI ATTAAT 1 cut(s) 344
XmiI GTMKAC 1 cut(s) 6
XspI CTAG 3 cut(s) 66, 201, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.