pycom01g20720

Arginine serine-rich-splicing factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Forward (+)
19028163 .. 19030061
1899 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 270 bp
ATGCCTCCATGTCCATGTCATCAGACAGGGCCAAGTTTGCAAATAACAAAAGTACAGGTCAAATCGAAGAAAGTATCACCTACCTCCTTCACATCCATCGCTCGCTCGCTCGCTAGGGTTACAGTTTTAAGCTCTGTTGCTTCCAAAGAGAAGGAAATGAGGCCAATTTTTTGTGGGAATTTTGAATATGATGCTCGACAGAATGAACTGGAGCGGCTGTTTGGTAGATATGGGAAAGTTGATAGGGTCGATATGAAGTCTGTGGAATAA

Protein Analysis

90

Amino Acids

10.02

Weight (kDa)

9.55

Isoelectric Point (pI)

29.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 214
AciI CCGC 1 cut(s) 214
AcsI RAATTY 1 cut(s) 178
AfaI GTAC 1 cut(s) 54
AgsI TTSAA 1 cut(s) 185
AluBI AGCT 1 cut(s) 132
AluI AGCT 1 cut(s) 132
AoxI GGCC 2 cut(s) 29, 161
ApoI RAATTY 1 cut(s) 178
AspS9I GGNCC 1 cut(s) 29
AsuHPI GGTGA 1 cut(s) 69
BccI CCATC 1 cut(s) 104
BfaI CTAG 1 cut(s) 114
BisI GCNGC 1 cut(s) 215
BlsI GCNGC 1 cut(s) 216
BmgT120I GGNCC 1 cut(s) 29
BmsI GCATC 1 cut(s) 181
BpmI CTGGAG 1 cut(s) 230
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bse1I ACTGG 1 cut(s) 213
BseGI GGATG 1 cut(s) 92
BseNI ACTGG 1 cut(s) 213
BshFI GGCC 2 cut(s) 31, 163
BsnI GGCC 2 cut(s) 31, 163
BspACI CCGC 1 cut(s) 214
BspANI GGCC 2 cut(s) 31, 163
BsrBI CCGCTC 1 cut(s) 214
BsrI ACTGG 1 cut(s) 213
Bst4CI ACNGT 1 cut(s) 124
BstC8I GCNNGC 3 cut(s) 103, 107, 111
BstF5I GGATG 1 cut(s) 92
BstMWI GCNNNNNNNGC 1 cut(s) 37
BsuRI GGCC 2 cut(s) 31, 163
BtgZI GCGATG 1 cut(s) 82
BtsCI GGATG 1 cut(s) 92
Cac8I GCNNGC 3 cut(s) 103, 107, 111
Cfr13I GGNCC 1 cut(s) 29
Csp6I GTAC 1 cut(s) 53
CviAII CATG 2 cut(s) 9, 15
CviJI RGCY 4 cut(s) 31, 132, 163, 217
CviKI_1 RGCY 4 cut(s) 31, 132, 163, 217
CviQI GTAC 1 cut(s) 53
FaeI CATG 2 cut(s) 12, 18
FaiI YATR 5 cut(s) 10, 16, 189, 231, 254
FatI CATG 2 cut(s) 8, 14
Fnu4HI GCNGC 1 cut(s) 215
FokI GGATG 1 cut(s) 79
Fsp4HI GCNGC 1 cut(s) 215
FspBI CTAG 1 cut(s) 114
GluI GCNGC 1 cut(s) 215
GsuI CTGGAG 1 cut(s) 230
HaeIII GGCC 2 cut(s) 31, 163
Hin1II CATG 2 cut(s) 12, 18
HphI GGTGA 1 cut(s) 69
Hpy188I TCNGA 1 cut(s) 24
HpyAV CCTTC 2 cut(s) 97, 145
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4V TGCA 1 cut(s) 40
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
Hsp92II CATG 2 cut(s) 12, 18
LmnI GCTCC 1 cut(s) 211
LpnPI CCDG 3 cut(s) 12, 41, 194
LweI GCATC 1 cut(s) 181
MaeI CTAG 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 118
MbiI CCGCTC 1 cut(s) 214
MboII GAAGA 1 cut(s) 79
MluCI AATT 2 cut(s) 165, 178
MnlI CCTC 3 cut(s) 15, 94, 153
MseI TTAA 1 cut(s) 128
MslI CAYNNNNRTG 1 cut(s) 13
MwoI GCNNNNNNNGC 1 cut(s) 37
NlaIII CATG 2 cut(s) 12, 18
PkrI GCNGC 1 cut(s) 216
PspPI GGNCC 1 cut(s) 29
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
RseI CAYNNNNRTG 1 cut(s) 13
SaqAI TTAA 1 cut(s) 128
SatI GCNGC 1 cut(s) 215
Sau96I GGNCC 1 cut(s) 29
SetI ASST 4 cut(s) 60, 82, 86, 134
SfaNI GCATC 1 cut(s) 181
SmiMI CAYNNNNRTG 1 cut(s) 13
Sse9I AATT 2 cut(s) 165, 178
SsiI CCGC 1 cut(s) 214
SspMI CTAG 1 cut(s) 114
TaaI ACNGT 1 cut(s) 124
TaqI TCGA 3 cut(s) 65, 196, 249
TasI AATT 2 cut(s) 165, 178
TatI WGTACW 1 cut(s) 52
TauI GCSGC 1 cut(s) 217
Tru1I TTAA 1 cut(s) 128
Tru9I TTAA 1 cut(s) 128
TspDTI ATGAA 2 cut(s) 219, 269
XapI RAATTY 1 cut(s) 178
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.