pycom01g21360

Cleavage and polyadenylation specificity factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Forward (+)
19440625 .. 19441027
403 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 300 bp
ATGCTTTGTCCCCAAAATTCGTCATCTAAAGTAATCTCAAGTTTTCAACTTCATGTTTTGAGCCCCAGAGATAGGGTTAAGCTACAACGATCTCGATTTGATTTCTTTGACAAGTTGAATTTGCTGGTGGGGCAAGCCATAAGGCTGGTTAGATACAGATATGCTAATAGTATTAGCACCCAATTTTTTGGTGCAACAGGTGGTGGTTTCGGCACCCAACAAATTGTGATCAAAGGCCTCTTATGTGAGGATTATTACAAGATTCGGGAGTATCTCTACTCACAATTTTATTTGCTTTAA

Protein Analysis

100

Amino Acids

11.51

Weight (kDa)

9.74

Isoelectric Point (pI)

32.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 212
AcsI RAATTY 2 cut(s) 16, 118
AfiI CCNNNNNNNGG 1 cut(s) 72
AgsI TTSAA 2 cut(s) 47, 118
AluBI AGCT 1 cut(s) 82
AluI AGCT 1 cut(s) 82
AoxI GGCC 1 cut(s) 235
ApoI RAATTY 2 cut(s) 16, 118
BanI GGYRCC 1 cut(s) 212
BanII GRGCYC 1 cut(s) 65
BclI TGATCA 1 cut(s) 228
BmiI GGNNCC 1 cut(s) 214
BpuEI CTTGAG 1 cut(s) 22
Bsc4I CCNNNNNNNGG 1 cut(s) 72
BseLI CCNNNNNNNGG 1 cut(s) 72
BshFI GGCC 1 cut(s) 237
BshNI GGYRCC 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 72
BsnI GGCC 1 cut(s) 237
Bsp1286I GDGCHC 1 cut(s) 65
Bsp143I GATC 2 cut(s) 89, 228
BspANI GGCC 1 cut(s) 237
BspLI GGNNCC 1 cut(s) 214
BspT107I GGYRCC 1 cut(s) 212
BssMI GATC 2 cut(s) 89, 228
BstC8I GCNNGC 1 cut(s) 135
BstKTI GATC 2 cut(s) 92, 231
BstMBI GATC 2 cut(s) 89, 228
BstMWI GCNNNNNNNGC 1 cut(s) 130
BstXI CCANNNNNNTGG 2 cut(s) 145, 188
BsuRI GGCC 1 cut(s) 237
Cac8I GCNNGC 1 cut(s) 135
CviAII CATG 1 cut(s) 53
CviJI RGCY 5 cut(s) 63, 82, 137, 145, 237
CviKI_1 RGCY 5 cut(s) 63, 82, 137, 145, 237
DpnI GATC 2 cut(s) 91, 230
DpnII GATC 2 cut(s) 89, 228
Eco147I AGGCCT 1 cut(s) 237
Eco24I GRGCYC 1 cut(s) 65
EcoT38I GRGCYC 1 cut(s) 65
FaeI CATG 1 cut(s) 56
FaiI YATR 4 cut(s) 54, 140, 162, 244
FatI CATG 1 cut(s) 52
FbaI TGATCA 1 cut(s) 228
FriOI GRGCYC 1 cut(s) 65
HaeIII GGCC 1 cut(s) 237
Hin1II CATG 1 cut(s) 56
HinfI GANTC 1 cut(s) 262
Hpy188III TCNNGA 2 cut(s) 93, 266
HpyCH4V TGCA 1 cut(s) 194
HpyF10VI GCNNNNNNNGC 1 cut(s) 130
Hsp92II CATG 1 cut(s) 56
Ksp22I TGATCA 1 cut(s) 228
Kzo9I GATC 2 cut(s) 89, 228
LpnPI CCDG 4 cut(s) 79, 110, 131, 183
MalI GATC 2 cut(s) 91, 230
MboI GATC 2 cut(s) 89, 228
MhlI GDGCHC 1 cut(s) 65
MluCI AATT 5 cut(s) 16, 118, 182, 222, 284
MnlI CCTC 2 cut(s) 241, 248
MseI TTAA 2 cut(s) 78, 298
MwoI GCNNNNNNNGC 1 cut(s) 130
NdeII GATC 2 cut(s) 89, 228
NlaIII CATG 1 cut(s) 56
NlaIV GGNNCC 1 cut(s) 214
PceI AGGCCT 1 cut(s) 237
PfeI GAWTC 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 214
SaqAI TTAA 2 cut(s) 78, 298
Sau3AI GATC 2 cut(s) 89, 228
SduI GDGCHC 1 cut(s) 65
SetI ASST 2 cut(s) 84, 202
SmlI CTYRAG 1 cut(s) 37
SmoI CTYRAG 1 cut(s) 37
Sse9I AATT 5 cut(s) 16, 118, 182, 222, 284
SseBI AGGCCT 1 cut(s) 237
StuI AGGCCT 1 cut(s) 237
TaqI TCGA 1 cut(s) 94
TasI AATT 5 cut(s) 16, 118, 182, 222, 284
TfiI GAWTC 1 cut(s) 262
Tru1I TTAA 2 cut(s) 78, 298
Tru9I TTAA 2 cut(s) 78, 298
TspDTI ATGAA 1 cut(s) 41
XapI RAATTY 2 cut(s) 16, 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.