Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

19952759 .. 19953546

Gene Structure 788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGTTTTGGGAGAGACGCAGGTCGGCTACACTTGAAGGAAACGGCGGAAGTGGGCCGTCCAAGAGATTAGATGACAAGTCAAAAGAAAAGAAGGTGATATGGACGTATGACTCATCAACTCCGTCATCTAGAAATGCAACCATTTATTGTGGAGCCAAGATCGATCTTCTCATAGGCACTGCTGATGGAGGCATTAAAGCATGGAATGTCGATGCAAAAAGAGTTGTCTGTGATCTTAGCACGAGTGAAGAATTTCCTAGTATCTTGGATATAAAGTGCAGCCCTGTACAGCCAATTTTTGTTACTGCAGCAGCATCCAAGGGGTATGTTCTTTATGTAATCTTATCATGTTGTCCATATACCTCCGTGTTTGATCAAATTCTTGGCCCGTATTGTAACAATCATCTTCAACTGAAGTATGGCATGAACACTGTCAATGATTATAATTTGATCATGAAAGATTCTTCTTACAGTTTACTTACACACATATATGTCTGTGTAAGTGGGCTTGGGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005829 GO:0006810 GO:0008150 GO:0010008 GO:0012505 GO:0016020 GO:0016192 GO:0016482 GO:0019207 GO:0019216 GO:0019220 GO:0019222 GO:0019898 GO:0030234 GO:0031090 GO:0031312 GO:0031313 GO:0031323 GO:0031410 GO:0031901 GO:0031902 GO:0031982 GO:0035014 GO:0042325 GO:0043226 GO:0043227 GO:0043229 GO:0043549 GO:0043550 GO:0043551 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045022 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051179 GO:0051234 GO:0051338 GO:0051641 GO:0051649 GO:0065007 GO:0065009 GO:0080090 GO:0097708 GO:0098588 GO:0098772 GO:0098805 GO:0098927 GO:1903725

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

173

Amino Acids

18.96

Weight (kDa)

8.11

Isoelectric Point (pI)

47.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	444
Acc36I	ACCTGC	1 cut(s)	9
AciI	CCGC	1 cut(s)	45
AcsI	RAATTY	2 cut(s)	251, 378
AcuI	CTGAAG	1 cut(s)	434
AfaI	GTAC	1 cut(s)	288
AgsI	TTSAA	2 cut(s)	35, 410
Alw26I	GTCTC	1 cut(s)	7
AoxI	GGCC	2 cut(s)	53, 385
ApeKI	GCWGC	3 cut(s)	279, 308, 311
ApoI	RAATTY	2 cut(s)	251, 378
Asp700I	GAANNNNTTC	1 cut(s)	252
AspS9I	GGNCC	2 cut(s)	53, 386
AsuHPI	GGTGA	1 cut(s)	106
BauI	CACGAG	1 cut(s)	241
BbvI	GCAGC	3 cut(s)	291, 320, 323
BccI	CCATC	1 cut(s)	179
BceAI	ACGGC	2 cut(s)	40, 58
BclI	TGATCA	2 cut(s)	373, 450
BcoDI	GTCTC	1 cut(s)	7
BfaI	CTAG	2 cut(s)	129, 258
BfmI	CTRYAG	1 cut(s)	306
BfuAI	ACCTGC	1 cut(s)	9
BisI	GCNGC	3 cut(s)	280, 309, 312
BlsI	GCNGC	3 cut(s)	281, 310, 313
BmgT120I	GGNCC	2 cut(s)	53, 386
BmiI	GGNNCC	1 cut(s)	154
BmsI	GCATC	2 cut(s)	202, 323
BoxI	GACNNNNGTC	1 cut(s)	19
Bsa29I	ATCGAT	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	318
BseCI	ATCGAT	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	318
BseGI	GGATG	1 cut(s)	314
BseXI	GCAGC	3 cut(s)	291, 320, 323
BsgI	GTGCAG	1 cut(s)	298
BshFI	GGCC	2 cut(s)	55, 387
BshVI	ATCGAT	1 cut(s)	162
BsmAI	GTCTC	1 cut(s)	7
BsmBI	CGTCTC	1 cut(s)	7
BsnI	GGCC	2 cut(s)	55, 387
Bsp1407I	TGTACA	1 cut(s)	286
Bsp143I	GATC	5 cut(s)	159, 163, 232, 373, 450
BspACI	CCGC	1 cut(s)	45
BspANI	GGCC	2 cut(s)	55, 387
BspDI	ATCGAT	1 cut(s)	162
BspHI	TCATGA	1 cut(s)	453
BspLI	GGNNCC	1 cut(s)	154
BspMAI	CTGCAG	1 cut(s)	310
BspMI	ACCTGC	1 cut(s)	9
BsrGI	TGTACA	1 cut(s)	286
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	5 cut(s)	159, 163, 232, 373, 450
BssSI	CACGAG	1 cut(s)	241
BssT1I	CCWWGG	1 cut(s)	318
Bst2BI	CACGAG	1 cut(s)	241
Bst4CI	ACNGT	2 cut(s)	433, 473
BstAUI	TGTACA	1 cut(s)	286
BstDEI	CTNAG	1 cut(s)	236
BstF5I	GGATG	1 cut(s)	314
BstKTI	GATC	5 cut(s)	162, 166, 235, 376, 453
BstMAI	GTCTC	1 cut(s)	7
BstMBI	GATC	5 cut(s)	159, 163, 232, 373, 450
BstPAI	GACNNNNGTC	1 cut(s)	19
BstSFI	CTRYAG	1 cut(s)	306
BstV1I	GCAGC	3 cut(s)	291, 320, 323
Bsu15I	ATCGAT	1 cut(s)	162
BsuRI	GGCC	2 cut(s)	55, 387
BsuTUI	ATCGAT	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	314
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	2 cut(s)	177, 429
BveI	ACCTGC	1 cut(s)	9
CciI	TCATGA	1 cut(s)	453
Cfr13I	GGNCC	2 cut(s)	53, 386
ClaI	ATCGAT	1 cut(s)	162
CseI	GACGC	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	287
CviAII	CATG	4 cut(s)	201, 348, 424, 454
CviJI	RGCY	8 cut(s)	26, 55, 155, 282, 292, 387, 508, 514
CviKI_1	RGCY	8 cut(s)	26, 55, 155, 282, 292, 387, 508, 514
CviQI	GTAC	1 cut(s)	287
DdeI	CTNAG	1 cut(s)	236
DpnI	GATC	5 cut(s)	161, 165, 234, 375, 452
DpnII	GATC	5 cut(s)	159, 163, 232, 373, 450
EciI	GGCGGA	1 cut(s)	60
Eco130I	CCWWGG	1 cut(s)	318
Eco57I	CTGAAG	1 cut(s)	434
EcoT14I	CCWWGG	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	318
Esp3I	CGTCTC	1 cut(s)	7
FaeI	CATG	4 cut(s)	204, 351, 427, 457
FatI	CATG	4 cut(s)	200, 347, 423, 453
FbaI	TGATCA	2 cut(s)	373, 450
Fnu4HI	GCNGC	3 cut(s)	280, 309, 312
FokI	GGATG	1 cut(s)	301
Fsp4HI	GCNGC	3 cut(s)	280, 309, 312
FspBI	CTAG	2 cut(s)	129, 258
GluI	GCNGC	3 cut(s)	280, 309, 312
HaeIII	GGCC	2 cut(s)	55, 387
HgaI	GACGC	1 cut(s)	24
Hin1II	CATG	4 cut(s)	204, 351, 427, 457
HinfI	GANTC	2 cut(s)	110, 461
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	1 cut(s)	476
Hpy188III	TCNNGA	2 cut(s)	129, 454
Hpy8I	GTNNAC	1 cut(s)	476
HpyAV	CCTTC	2 cut(s)	29, 85
HpyCH4III	ACNGT	2 cut(s)	433, 473
HpyCH4IV	ACGT	1 cut(s)	104
HpyCH4V	TGCA	4 cut(s)	137, 215, 279, 308
HpyF3I	CTNAG	1 cut(s)	236
HpySE526I	ACGT	1 cut(s)	104
Hsp92II	CATG	4 cut(s)	204, 351, 427, 457
Ksp22I	TGATCA	2 cut(s)	373, 450
Kzo9I	GATC	5 cut(s)	159, 163, 232, 373, 450
LmnI	GCTCC	1 cut(s)	152
LpnPI	CCDG	2 cut(s)	4, 297
Lsp1109I	GCAGC	3 cut(s)	291, 320, 323
LweI	GCATC	2 cut(s)	202, 323
MaeI	CTAG	2 cut(s)	129, 258
MaeII	ACGT	1 cut(s)	104
MaeIII	GTNAC	2 cut(s)	301, 395
MalI	GATC	5 cut(s)	161, 165, 234, 375, 452
MboI	GATC	5 cut(s)	159, 163, 232, 373, 450
MboII	GAAGA	4 cut(s)	158, 260, 398, 456
MluCI	AATT	4 cut(s)	251, 294, 378, 445
MlyI	GAGTC	1 cut(s)	104
MnlI	CCTC	2 cut(s)	182, 373
MroXI	GAANNNNTTC	1 cut(s)	252
MseI	TTAA	2 cut(s)	195, 517
MslI	CAYNNNNRTG	1 cut(s)	489
NdeII	GATC	5 cut(s)	159, 163, 232, 373, 450
NlaIII	CATG	4 cut(s)	204, 351, 427, 457
NlaIV	GGNNCC	1 cut(s)	154
PagI	TCATGA	1 cut(s)	453
PdmI	GAANNNNTTC	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	461
PkrI	GCNGC	3 cut(s)	281, 310, 313
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
PshAI	GACNNNNGTC	1 cut(s)	19
PsiI	TTATAA	1 cut(s)	444
PspN4I	GGNNCC	1 cut(s)	154
PspPI	GGNCC	2 cut(s)	53, 386
PstI	CTGCAG	1 cut(s)	310
RsaI	GTAC	1 cut(s)	288
RsaNI	GTAC	1 cut(s)	287
RseI	CAYNNNNRTG	1 cut(s)	489
SaqAI	TTAA	2 cut(s)	195, 517
SatI	GCNGC	3 cut(s)	280, 309, 312
Sau3AI	GATC	5 cut(s)	159, 163, 232, 373, 450
Sau96I	GGNCC	2 cut(s)	53, 386
SchI	GAGTC	1 cut(s)	104
SetI	ASST	4 cut(s)	23, 96, 107, 365
SfaNI	GCATC	2 cut(s)	202, 323
SfcI	CTRYAG	1 cut(s)	306
SmiMI	CAYNNNNRTG	1 cut(s)	489
Sse9I	AATT	4 cut(s)	251, 294, 378, 445
SsiI	CCGC	1 cut(s)	45
SspMI	CTAG	2 cut(s)	129, 258
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	2 cut(s)	433, 473
TaiI	ACGT	1 cut(s)	107
TaqI	TCGA	2 cut(s)	162, 210
TasI	AATT	4 cut(s)	251, 294, 378, 445
TatI	WGTACW	1 cut(s)	286
TfiI	GAWTC	1 cut(s)	461
Tru1I	TTAA	2 cut(s)	195, 517
Tru9I	TTAA	2 cut(s)	195, 517
TscAI	CASTG	2 cut(s)	184, 436
TseI	GCWGC	3 cut(s)	279, 308, 311
TspDTI	ATGAA	2 cut(s)	440, 470
TspGWI	ACGGA	2 cut(s)	111, 355
TspRI	CASTG	2 cut(s)	184, 436
XapI	RAATTY	2 cut(s)	251, 378
XbaI	TCTAGA	1 cut(s)	128
XmnI	GAANNNNTTC	1 cut(s)	252
XspI	CTAG	2 cut(s)	129, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.