Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

20889240 .. 20889860

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCCGCTGTGTGCTCACCCTTTTCCCGCTTCTTCTTCATCCTCCTCGGATTCTCTCTTTTCATTTTAACTAGCTCCTCCTCCTCCTCCTCCTCCGGCCACCAATCCAGCTTTGGCTCGATACCCTTGGGTTCACTGCATTCTCGGATTCATTCATTCCGTTCTGTTGGAATCGACGGCCTCGTGCTTTCTCAGTTGATTATAAAATCCCCAAGTTTGTTAACTGCTGAGGAAATTGGTCCGTTTCTGCAATTTGTGCTCGACGATTTGGAAGGGAAGATTGAGCCGTCGCGGCTTAAGCGATCGCTTCTTCACCGCGGCGTTCCCGTTGACAAGATATTCGATGTTCTCAACAAGGTTAATCTGCACGAGGCATTGTCTCAAGTCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008380 GO:0009295 GO:0009507 GO:0009508 GO:0009532 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0032502 GO:0034622 GO:0034641 GO:0042254 GO:0042255 GO:0042646 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

131

Amino Acids

14.14

Weight (kDa)

8.0

Isoelectric Point (pI)

67.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	203
AccII	CGCG	2 cut(s)	292, 318
AciI	CCGC	5 cut(s)	6, 28, 292, 316, 318
AcoI	YGGCCR	2 cut(s)	3, 97
AflII	CTTAAG	1 cut(s)	296
AluBI	AGCT	2 cut(s)	75, 111
AluI	AGCT	2 cut(s)	75, 111
Alw21I	GWGCWC	2 cut(s)	17, 261
Alw26I	GTCTC	1 cut(s)	384
AoxI	GGCC	3 cut(s)	3, 97, 178
ArsI	GACNNNNNNTTYG	2 cut(s)	323, 355
AsiSI	GCGATCGC	1 cut(s)	305
AspS9I	GGNCC	1 cut(s)	239
AsuHPI	GGTGA	2 cut(s)	9, 305
AvaII	GGWCC	1 cut(s)	239
BauI	CACGAG	2 cut(s)	182, 368
Bbv12I	GWGCWC	2 cut(s)	17, 261
BbvCI	CCTCAGC	1 cut(s)	228
BceAI	ACGGC	2 cut(s)	193, 271
BcoDI	GTCTC	1 cut(s)	384
BfaI	CTAG	1 cut(s)	72
BfrI	CTTAAG	1 cut(s)	296
BglI	GCCNNNNNGGC	1 cut(s)	292
BisI	GCNGC	3 cut(s)	6, 293, 319
BlsI	GCNGC	3 cut(s)	7, 294, 320
Bme18I	GGWCC	1 cut(s)	239
BmgT120I	GGNCC	1 cut(s)	239
Bpu10I	CCTNAGC	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	366
BsaJI	CCNNGG	3 cut(s)	46, 126, 316
BseDI	CCNNGG	3 cut(s)	46, 126, 316
BseGI	GGATG	1 cut(s)	39
BseMII	CTCAG	2 cut(s)	206, 219
BseRI	GAGGAG	7 cut(s)	35, 67, 70, 73, 76, 79, 82
BsgI	GTGCAG	1 cut(s)	350
Bsh1236I	CGCG	2 cut(s)	292, 318
Bsh1285I	CGRYCG	1 cut(s)	305
BshFI	GGCC	3 cut(s)	5, 99, 180
BsiEI	CGRYCG	1 cut(s)	305
BsiHKAI	GWGCWC	2 cut(s)	17, 261
BsiSI	CCGG	1 cut(s)	96
BsmAI	GTCTC	1 cut(s)	384
BsmI	GAATGC	1 cut(s)	139
BsnI	GGCC	3 cut(s)	5, 99, 180
Bsp1286I	GDGCHC	2 cut(s)	17, 261
Bsp143I	GATC	1 cut(s)	302
BspACI	CCGC	5 cut(s)	6, 28, 292, 316, 318
BspANI	GGCC	3 cut(s)	5, 99, 180
BspCNI	CTCAG	2 cut(s)	205, 220
BspFNI	CGCG	2 cut(s)	292, 318
BspTI	CTTAAG	1 cut(s)	296
BssECI	CCNNGG	3 cut(s)	46, 126, 316
BssMI	GATC	1 cut(s)	302
BssSI	CACGAG	2 cut(s)	182, 368
BssT1I	CCWWGG	1 cut(s)	126
Bst2BI	CACGAG	2 cut(s)	182, 368
BstAFI	CTTAAG	1 cut(s)	296
BstAPI	GCANNNNNTGC	1 cut(s)	256
BstDEI	CTNAG	2 cut(s)	192, 228
BstDSI	CCRYGG	1 cut(s)	316
BstF5I	GGATG	1 cut(s)	39
BstFNI	CGCG	2 cut(s)	292, 318
BstKTI	GATC	1 cut(s)	305
BstMAI	GTCTC	1 cut(s)	384
BstMBI	GATC	1 cut(s)	302
BstMCI	CGRYCG	1 cut(s)	305
BstMWI	GCNNNNNNNGC	3 cut(s)	256, 292, 298
BstUI	CGCG	2 cut(s)	292, 318
BsuRI	GGCC	3 cut(s)	5, 99, 180
BtgI	CCRYGG	1 cut(s)	316
BtsCI	GGATG	1 cut(s)	39
BtsI	GCAGTG	1 cut(s)	134
BtsIMutI	CAGTG	1 cut(s)	134
Cfr13I	GGNCC	1 cut(s)	239
Cfr42I	CCGCGG	1 cut(s)	319
CviJI	RGCY	8 cut(s)	5, 75, 99, 111, 117, 180, 286, 295
CviKI_1	RGCY	8 cut(s)	5, 75, 99, 111, 117, 180, 286, 295
DdeI	CTNAG	2 cut(s)	192, 228
DpnI	GATC	1 cut(s)	304
DpnII	GATC	1 cut(s)	302
EaeI	YGGCCR	2 cut(s)	3, 97
Eco130I	CCWWGG	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	239
EcoT14I	CCWWGG	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	126
FaiI	YATR	1 cut(s)	203
FauI	CCCGC	1 cut(s)	35
Fnu4HI	GCNGC	3 cut(s)	6, 293, 319
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	3 cut(s)	6, 293, 319
FspBI	CTAG	1 cut(s)	72
GluI	GCNGC	3 cut(s)	6, 293, 319
HaeIII	GGCC	3 cut(s)	5, 99, 180
HapII	CCGG	1 cut(s)	96
HincII	GTYRAC	2 cut(s)	222, 331
HindII	GTYRAC	2 cut(s)	222, 331
HinfI	GANTC	3 cut(s)	51, 148, 171
HpaI	GTTAAC	1 cut(s)	222
HpaII	CCGG	1 cut(s)	96
HphI	GGTGA	2 cut(s)	9, 305
Hpy166II	GTNNAC	3 cut(s)	134, 222, 331
Hpy188I	TCNGA	2 cut(s)	50, 147
Hpy8I	GTNNAC	3 cut(s)	134, 222, 331
Hpy99I	CGWCG	3 cut(s)	179, 266, 292
HpyAV	CCTTC	1 cut(s)	266
HpyCH4V	TGCA	3 cut(s)	139, 250, 367
HpyF10VI	GCNNNNNNNGC	3 cut(s)	256, 292, 298
HpyF3I	CTNAG	2 cut(s)	192, 228
KspAI	GTTAAC	1 cut(s)	222
KspI	CCGCGG	1 cut(s)	319
Kzo9I	GATC	1 cut(s)	302
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	2 cut(s)	109, 121
MaeI	CTAG	1 cut(s)	72
MalI	GATC	1 cut(s)	304
MboI	GATC	1 cut(s)	302
MboII	GAAGA	4 cut(s)	25, 28, 289, 302
MhlI	GDGCHC	2 cut(s)	17, 261
MluCI	AATT	2 cut(s)	234, 251
MmeI	TCCRAC	1 cut(s)	148
MseI	TTAA	4 cut(s)	68, 221, 297, 360
MspA1I	CMGCKG	2 cut(s)	8, 318
MspCI	CTTAAG	1 cut(s)	296
MspI	CCGG	1 cut(s)	96
Mva1269I	GAATGC	1 cut(s)	139
MvnI	CGCG	2 cut(s)	292, 318
MwoI	GCNNNNNNNGC	3 cut(s)	256, 292, 298
NdeII	GATC	1 cut(s)	302
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PctI	GAATGC	1 cut(s)	139
PfeI	GAWTC	3 cut(s)	51, 148, 171
PkrI	GCNGC	3 cut(s)	7, 294, 320
Ple19I	CGATCG	1 cut(s)	305
PsiI	TTATAA	1 cut(s)	203
PspPI	GGNCC	1 cut(s)	239
PvuI	CGATCG	1 cut(s)	305
RgaI	GCGATCGC	1 cut(s)	305
SacII	CCGCGG	1 cut(s)	319
SaqAI	TTAA	4 cut(s)	68, 221, 297, 360
SatI	GCNGC	3 cut(s)	6, 293, 319
Sau3AI	GATC	1 cut(s)	302
Sau96I	GGNCC	1 cut(s)	239
SduI	GDGCHC	2 cut(s)	17, 261
SetI	ASST	3 cut(s)	77, 113, 360
SfaAI	GCGATCGC	1 cut(s)	305
Sfr303I	CCGCGG	1 cut(s)	319
SgfI	GCGATCGC	1 cut(s)	305
SgrBI	CCGCGG	1 cut(s)	319
SinI	GGWCC	1 cut(s)	239
SmlI	CTYRAG	2 cut(s)	296, 381
SmoI	CTYRAG	2 cut(s)	296, 381
Sse9I	AATT	2 cut(s)	234, 251
SsiI	CCGC	5 cut(s)	6, 28, 292, 316, 318
SspMI	CTAG	1 cut(s)	72
StyI	CCWWGG	1 cut(s)	126
TaqI	TCGA	4 cut(s)	119, 174, 261, 342
TasI	AATT	2 cut(s)	234, 251
TauI	GCSGC	3 cut(s)	8, 295, 321
TfiI	GAWTC	3 cut(s)	51, 148, 171
Tru1I	TTAA	4 cut(s)	68, 221, 297, 360
Tru9I	TTAA	4 cut(s)	68, 221, 297, 360
TscAI	CASTG	1 cut(s)	141
TspDTI	ATGAA	4 cut(s)	28, 52, 140, 144
TspGWI	ACGGA	2 cut(s)	149, 231
TspRI	CASTG	1 cut(s)	141
Vha464I	CTTAAG	1 cut(s)	296
VpaK11BI	GGWCC	1 cut(s)	239
XcmI	CCANNNNNNNNNTGG	1 cut(s)	110
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.