Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

21149621 .. 21150274

Gene Structure 654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGCATTATGATGTCAAGATGCCTTGCCATCTTATCCTCTCAAAGCTTGCGGACAAGTGTCCATCCGCCGTACTGGCAGTGCTGGACTCGTTGGTGGATCTTCTCCAAAAAACTATCAACTTCAAGCCAAAGCAAGATGCTGTCAAGCAAGAAGTAGACCGCAATGAAGACATGATTCGCAGCGCTCTGAGAGCTATTGCGTCCTTGCACCGTATAAGTGGCGGAGATTGCAGCCTTAAATTCAAGAACCTTATGAATGAAATTTTAAAATCTCCATCGCTCGGTGACAAGTACGTTTCTATCCGAAATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010033 GO:0010051 GO:0010228 GO:0010265 GO:0016020 GO:0016043 GO:0016567 GO:0019538 GO:0022414 GO:0022607 GO:0030312 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0065003 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIP120

Protein Analysis

105

Amino Acids

11.68

Weight (kDa)

8.82

Isoelectric Point (pI)

57.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIP120	PF08623	2 - 88	4.4e-21	TATA-binding protein interacting (TIP20)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	156
AciI	CCGC	4 cut(s)	50, 66, 160, 222
AclWI	GGATC	1 cut(s)	105
AcsI	RAATTY	2 cut(s)	239, 261
AfaI	GTAC	2 cut(s)	72, 293
AfeI	AGCGCT	1 cut(s)	184
AfiI	CCNNNNNNNGG	1 cut(s)	281
AgsI	TTSAA	2 cut(s)	124, 244
AluBI	AGCT	2 cut(s)	46, 194
AluI	AGCT	2 cut(s)	46, 194
AlwI	GGATC	1 cut(s)	105
Aor51HI	AGCGCT	1 cut(s)	184
ApeKI	GCWGC	2 cut(s)	180, 231
ApoI	RAATTY	2 cut(s)	239, 261
AspLEI	GCGC	1 cut(s)	185
AsuHPI	GGTGA	1 cut(s)	296
BbsI	GAAGAC	1 cut(s)	174
BbvI	GCAGC	2 cut(s)	192, 243
BccI	CCATC	3 cut(s)	36, 70, 283
BceAI	ACGGC	1 cut(s)	53
BfoI	RGCGCY	1 cut(s)	186
BglI	GCCNNNNNGGC	1 cut(s)	74
BisI	GCNGC	2 cut(s)	181, 232
BlsI	GCNGC	2 cut(s)	182, 233
BmsI	GCATC	2 cut(s)	9, 127
BoxI	GACNNNNGTC	1 cut(s)	57
BpiI	GAAGAC	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse1I	ACTGG	1 cut(s)	78
Bse3DI	GCAATG	1 cut(s)	169
BseGI	GGATG	1 cut(s)	62
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMI	GCAATG	1 cut(s)	169
BseMII	CTCAG	1 cut(s)	179
BseNI	ACTGG	1 cut(s)	78
BseXI	GCAGC	2 cut(s)	192, 243
BslI	CCNNNNNNNGG	1 cut(s)	281
Bsp143I	GATC	1 cut(s)	97
BspACI	CCGC	4 cut(s)	50, 66, 160, 222
BspCNI	CTCAG	1 cut(s)	180
BspPI	GGATC	1 cut(s)	105
BsrDI	GCAATG	1 cut(s)	169
BsrI	ACTGG	1 cut(s)	78
BssMI	GATC	1 cut(s)	97
Bst4CI	ACNGT	1 cut(s)	212
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	1 cut(s)	188
BstF5I	GGATG	1 cut(s)	62
BstH2I	RGCGCY	1 cut(s)	186
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	1 cut(s)	100
BstMBI	GATC	1 cut(s)	97
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 191, 228
BstPAI	GACNNNNGTC	1 cut(s)	57
BstV1I	GCAGC	2 cut(s)	192, 243
BstV2I	GAAGAC	1 cut(s)	174
BstX2I	RGATCY	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	97
BtgZI	GCGATG	1 cut(s)	261
BtsCI	GGATG	1 cut(s)	62
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	84
Cac8I	GCNNGC	1 cut(s)	48
CfoI	GCGC	1 cut(s)	185
CseI	GACGC	1 cut(s)	189
Csp6I	GTAC	2 cut(s)	71, 292
CviAII	CATG	1 cut(s)	172
CviJI	RGCY	4 cut(s)	46, 127, 194, 234
CviKI_1	RGCY	4 cut(s)	46, 127, 194, 234
CviQI	GTAC	2 cut(s)	71, 292
DdeI	CTNAG	1 cut(s)	188
DpnI	GATC	1 cut(s)	99
DpnII	GATC	1 cut(s)	97
DraI	TTTAAA	1 cut(s)	267
EciI	GGCGGA	2 cut(s)	55, 237
Eco47III	AGCGCT	1 cut(s)	184
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	1 cut(s)	175
FaiI	YATR	4 cut(s)	9, 173, 215, 254
FatI	CATG	1 cut(s)	171
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	2 cut(s)	181, 232
FokI	GGATG	1 cut(s)	49
Fsp4HI	GCNGC	2 cut(s)	181, 232
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	2 cut(s)	181, 232
HaeII	RGCGCY	1 cut(s)	186
HgaI	GACGC	1 cut(s)	189
HhaI	GCGC	1 cut(s)	185
Hin1II	CATG	1 cut(s)	175
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HindIII	AAGCTT	1 cut(s)	44
HinfI	GANTC	2 cut(s)	86, 175
HphI	GGTGA	1 cut(s)	296
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	2 cut(s)	189, 305
Hpy188III	TCNNGA	2 cut(s)	16, 244
Hpy8I	GTNNAC	1 cut(s)	157
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	3 cut(s)	4, 208, 231
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 191, 228
HpyF3I	CTNAG	1 cut(s)	188
HpySE526I	ACGT	1 cut(s)	294
Hsp92II	CATG	1 cut(s)	175
HspAI	GCGC	1 cut(s)	183
Kzo9I	GATC	1 cut(s)	97
LpnPI	CCDG	2 cut(s)	59, 68
Lsp1109I	GCAGC	2 cut(s)	192, 243
LweI	GCATC	2 cut(s)	9, 127
MaeII	ACGT	1 cut(s)	294
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	1 cut(s)	99
MboI	GATC	1 cut(s)	97
MboII	GAAGA	2 cut(s)	92, 179
MflI	RGATCY	1 cut(s)	97
MluCI	AATT	2 cut(s)	239, 261
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	1 cut(s)	47
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	237, 266
MslI	CAYNNNNRTG	1 cut(s)	9
MwoI	GCNNNNNNNGC	3 cut(s)	74, 191, 228
NdeII	GATC	1 cut(s)	97
NlaIII	CATG	1 cut(s)	175
NmuCI	GTSAC	1 cut(s)	284
NsiI	ATGCAT	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	175
PkrI	GCNGC	2 cut(s)	182, 233
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
PshAI	GACNNNNGTC	1 cut(s)	57
PsuI	RGATCY	1 cut(s)	97
RsaI	GTAC	2 cut(s)	72, 293
RsaNI	GTAC	2 cut(s)	71, 292
RseI	CAYNNNNRTG	1 cut(s)	9
SaqAI	TTAA	2 cut(s)	237, 266
SatI	GCNGC	2 cut(s)	181, 232
Sau3AI	GATC	1 cut(s)	97
SchI	GAGTC	1 cut(s)	80
SetI	ASST	4 cut(s)	48, 196, 252, 297
SfaNI	GCATC	2 cut(s)	9, 127
SmiMI	CAYNNNNRTG	1 cut(s)	9
Sse9I	AATT	2 cut(s)	239, 261
SsiI	CCGC	4 cut(s)	50, 66, 160, 222
TaaI	ACNGT	1 cut(s)	212
TaiI	ACGT	1 cut(s)	297
TasI	AATT	2 cut(s)	239, 261
TfiI	GAWTC	1 cut(s)	175
Tru1I	TTAA	2 cut(s)	237, 266
Tru9I	TTAA	2 cut(s)	237, 266
TscAI	CASTG	1 cut(s)	84
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	2 cut(s)	180, 231
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	3 cut(s)	180, 269, 273
TspRI	CASTG	1 cut(s)	84
XapI	RAATTY	2 cut(s)	239, 261
XmiI	GTMKAC	1 cut(s)	156
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.