pycom01g24110

Belongs to the eukaryotic ribosomal protein eL13 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Reverse (-)
21156869 .. 21157144
276 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 276 bp
ATGAGTTTATTGAAGTTGATTACCGGAGGAAGCGTTATAATGATAAATAAAATACAATTGTTTTTCAGTTTTGAGCAGTTCGCCAGATTCCATAAAAATATAAACATGGTCTTAAATTTGGAATTGTTGATCAGCTTTATTTTGCTTCTGTCTTCCACCCATGCGCTTTTATGTGATGATTTTAACAAGTTGTTTACCTTGTTTGCTTACCAGTCTGCTGGAATTCCAAAGAAACTTGCACCTACCATTGGAATTTCTGTTGATCATAGCGCGTAG

Protein Analysis

92

Amino Acids

10.17

Weight (kDa)

8.93

Isoelectric Point (pI)

33.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 38
AccII CGCG 1 cut(s) 272
AcsI RAATTY 3 cut(s) 115, 222, 252
AfiI CCNNNNNNNGG 1 cut(s) 248
AgsI TTSAA 1 cut(s) 13
AluBI AGCT 1 cut(s) 135
AluI AGCT 1 cut(s) 135
ApoI RAATTY 3 cut(s) 115, 222, 252
AspLEI GCGC 2 cut(s) 166, 272
BbsI GAAGAC 1 cut(s) 144
BclI TGATCA 2 cut(s) 129, 262
BpiI GAAGAC 1 cut(s) 144
BsaWI WCCGGW 1 cut(s) 23
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bsc4I CCNNNNNNNGG 1 cut(s) 248
Bse1I ACTGG 1 cut(s) 211
BseLI CCNNNNNNNGG 1 cut(s) 248
BseNI ACTGG 1 cut(s) 211
Bsh1236I CGCG 1 cut(s) 272
BsiSI CCGG 1 cut(s) 24
BslI CCNNNNNNNGG 1 cut(s) 248
Bsp143I GATC 2 cut(s) 129, 262
BspFNI CGCG 1 cut(s) 272
BsrI ACTGG 1 cut(s) 211
BssMI GATC 2 cut(s) 129, 262
BstFNI CGCG 1 cut(s) 272
BstHHI GCGC 2 cut(s) 166, 272
BstKTI GATC 2 cut(s) 132, 265
BstMBI GATC 2 cut(s) 129, 262
BstUI CGCG 1 cut(s) 272
BstV2I GAAGAC 1 cut(s) 144
BstXI CCANNNNNNTGG 1 cut(s) 218
CfoI GCGC 2 cut(s) 166, 272
CviAII CATG 2 cut(s) 106, 161
CviJI RGCY 1 cut(s) 135
CviKI_1 RGCY 1 cut(s) 135
DpnI GATC 2 cut(s) 131, 264
DpnII GATC 2 cut(s) 129, 262
EcoRI GAATTC 1 cut(s) 222
FaeI CATG 2 cut(s) 109, 164
FaiI YATR 7 cut(s) 38, 93, 101, 107, 162, 172, 267
FatI CATG 2 cut(s) 105, 160
FbaI TGATCA 2 cut(s) 129, 262
GlaI GCGC 2 cut(s) 165, 271
HapII CCGG 1 cut(s) 24
HhaI GCGC 2 cut(s) 166, 272
Hin1II CATG 2 cut(s) 109, 164
Hin6I GCGC 2 cut(s) 164, 270
HinP1I GCGC 2 cut(s) 164, 270
HinfI GANTC 1 cut(s) 87
HpaII CCGG 1 cut(s) 24
Hpy166II GTNNAC 1 cut(s) 195
Hpy8I GTNNAC 1 cut(s) 195
HpyCH4V TGCA 1 cut(s) 239
Hsp92II CATG 2 cut(s) 109, 164
HspAI GCGC 2 cut(s) 164, 270
Ksp22I TGATCA 2 cut(s) 129, 262
Kzo9I GATC 2 cut(s) 129, 262
LpnPI CCDG 4 cut(s) 37, 97, 204, 224
MalI GATC 2 cut(s) 131, 264
MboI GATC 2 cut(s) 129, 262
MboII GAAGA 1 cut(s) 144
MfeI CAATTG 1 cut(s) 56
MluCI AATT 5 cut(s) 56, 115, 122, 222, 252
MnlI CCTC 1 cut(s) 20
MseI TTAA 2 cut(s) 113, 183
MspI CCGG 1 cut(s) 24
MunI CAATTG 1 cut(s) 56
MvnI CGCG 1 cut(s) 272
NdeII GATC 2 cut(s) 129, 262
NlaIII CATG 2 cut(s) 109, 164
PfeI GAWTC 1 cut(s) 87
PsiI TTATAA 1 cut(s) 38
SaqAI TTAA 2 cut(s) 113, 183
Sau3AI GATC 2 cut(s) 129, 262
SetI ASST 3 cut(s) 137, 200, 244
SgeI CNNG 9 cut(s) 36, 96, 118, 173, 199, 211, 223, 231, 248
Sse9I AATT 5 cut(s) 56, 115, 122, 222, 252
TasI AATT 5 cut(s) 56, 115, 122, 222, 252
TfiI GAWTC 1 cut(s) 87
Tru1I TTAA 2 cut(s) 113, 183
Tru9I TTAA 2 cut(s) 113, 183
XapI RAATTY 3 cut(s) 115, 222, 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.