Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

21187879 .. 21188419

Gene Structure 541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGGCTTCAGCTCTCGGCGGAGGGATGGCTGTTGTGATCATGGGAGTCAGTGGTGCTGGCAAATCGCGCCCGAGCGAGGTCCTGAGTTCGATTACCGCTCCCTCCCCAATATTGCTTGTACATGGAAAAAAACTAACAATCTTCAGAAGCACCACCGCACCGGATGCCAATGACTTTCTCAAATACCTTGCACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0006082 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016052 GO:0016054 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019520 GO:0019521 GO:0019523 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044262 GO:0044275 GO:0044281 GO:0044282 GO:0046176 GO:0046183 GO:0046316 GO:0046395 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

AAA_33 SKI

Protein Analysis

66

Amino Acids

6.63

Weight (kDa)

9.82

Isoelectric Point (pI)

47.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	98
AccII	CGCG	1 cut(s)	67
AciI	CCGC	3 cut(s)	18, 96, 156
AcuI	CTGAAG	1 cut(s)	127
AfaI	GTAC	1 cut(s)	120
AfiI	CCNNNNNNNGG	1 cut(s)	76
AluBI	AGCT	1 cut(s)	11
AluI	AGCT	1 cut(s)	11
Ama87I	CYCGRG	1 cut(s)	70
AspLEI	GCGC	1 cut(s)	69
AspS9I	GGNCC	1 cut(s)	79
AvaI	CYCGRG	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	79
BccI	CCATC	1 cut(s)	19
BclI	TGATCA	1 cut(s)	36
Bme18I	GGWCC	1 cut(s)	79
BmeT110I	CYCGRG	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	79
BmsI	GCATC	1 cut(s)	154
BsaWI	WCCGGW	1 cut(s)	160
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
BseGI	GGATG	2 cut(s)	30, 169
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	74
Bsh1236I	CGCG	1 cut(s)	67
BsiHKCI	CYCGRG	1 cut(s)	70
BsiSI	CCGG	1 cut(s)	161
BslI	CCNNNNNNNGG	1 cut(s)	76
BsoBI	CYCGRG	1 cut(s)	70
Bsp1407I	TGTACA	1 cut(s)	118
Bsp143I	GATC	1 cut(s)	36
BspACI	CCGC	3 cut(s)	18, 96, 156
BspCNI	CTCAG	1 cut(s)	75
BspFNI	CGCG	1 cut(s)	67
BsrBI	CCGCTC	1 cut(s)	98
BsrGI	TGTACA	1 cut(s)	118
BssMI	GATC	1 cut(s)	36
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstAUI	TGTACA	1 cut(s)	118
BstC8I	GCNNGC	1 cut(s)	58
BstDEI	CTNAG	1 cut(s)	83
BstF5I	GGATG	2 cut(s)	30, 169
BstFNI	CGCG	1 cut(s)	67
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	1 cut(s)	39
BstMBI	GATC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 164
BstUI	CGCG	1 cut(s)	67
BtsCI	GGATG	2 cut(s)	30, 169
BtsIMutI	CAGTG	1 cut(s)	55
Cac8I	GCNNGC	1 cut(s)	58
CfoI	GCGC	1 cut(s)	69
Cfr13I	GGNCC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	119
CviAII	CATG	2 cut(s)	40, 122
CviJI	RGCY	3 cut(s)	5, 11, 29
CviKI_1	RGCY	3 cut(s)	5, 11, 29
CviQI	GTAC	1 cut(s)	119
DdeI	CTNAG	1 cut(s)	83
DpnI	GATC	1 cut(s)	38
DpnII	GATC	1 cut(s)	36
EciI	GGCGGA	1 cut(s)	33
Eco47I	GGWCC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	127
Eco88I	CYCGRG	1 cut(s)	70
EcoO109I	RGGNCCY	1 cut(s)	79
FaeI	CATG	2 cut(s)	43, 125
FaiI	YATR	2 cut(s)	41, 123
FatI	CATG	2 cut(s)	39, 121
FbaI	TGATCA	1 cut(s)	36
FokI	GGATG	2 cut(s)	37, 176
GlaI	GCGC	1 cut(s)	68
HapII	CCGG	1 cut(s)	161
HhaI	GCGC	1 cut(s)	69
Hin1II	CATG	2 cut(s)	43, 125
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HinfI	GANTC	1 cut(s)	45
HpaII	CCGG	1 cut(s)	161
Hpy188I	TCNGA	1 cut(s)	146
Hpy188III	TCNNGA	1 cut(s)	82
HpyCH4V	TGCA	1 cut(s)	191
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 164
HpyF3I	CTNAG	1 cut(s)	83
Hsp92II	CATG	2 cut(s)	43, 125
HspAI	GCGC	1 cut(s)	67
Ksp22I	TGATCA	1 cut(s)	36
Kzo9I	GATC	1 cut(s)	36
LmnI	GCTCC	1 cut(s)	103
LpnPI	CCDG	3 cut(s)	42, 95, 174
LweI	GCATC	1 cut(s)	154
MalI	GATC	1 cut(s)	38
MbiI	CCGCTC	1 cut(s)	98
MboI	GATC	1 cut(s)	36
MboII	GAAGA	1 cut(s)	133
MlyI	GAGTC	1 cut(s)	54
MnlI	CCTC	3 cut(s)	14, 70, 112
MspI	CCGG	1 cut(s)	161
MvnI	CGCG	1 cut(s)	67
MwoI	GCNNNNNNNGC	2 cut(s)	66, 164
NdeII	GATC	1 cut(s)	36
NlaIII	CATG	2 cut(s)	43, 125
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
PpuMI	RGGWCCY	1 cut(s)	79
Psp5II	RGGWCCY	1 cut(s)	79
PspPI	GGNCC	1 cut(s)	79
PspPPI	RGGWCCY	1 cut(s)	79
RsaI	GTAC	1 cut(s)	120
RsaNI	GTAC	1 cut(s)	119
Sau3AI	GATC	1 cut(s)	36
Sau96I	GGNCC	1 cut(s)	79
SchI	GAGTC	1 cut(s)	54
SetI	ASST	3 cut(s)	13, 81, 189
SfaNI	GCATC	1 cut(s)	154
SinI	GGWCC	1 cut(s)	79
SsiI	CCGC	3 cut(s)	18, 96, 156
SspI	AATATT	1 cut(s)	111
TaqI	TCGA	1 cut(s)	89
TatI	WGTACW	1 cut(s)	118
TscAI	CASTG	1 cut(s)	55
TspRI	CASTG	1 cut(s)	55
VpaK11BI	GGWCC	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.