pycom02g00160

Belongs to the eukaryotic ribosomal protein eS24 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Forward (+)
95549 .. 96477
929 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 315 bp
ATGCCATCTTTGTTTTCAAGTTCCGCACCCATTTTGGAGGGGGGGAAATCCACTGATTTCGATTTGATTTATGATTCAGTTGAGAATGCAAAGAAGTACGAGCCCAACTACAGGCTGATCAGGACAGTCTCAATCTCTCTCACTTGCGCAACCATGGCTACTTGTGCAGAATGGACTGGACACAAAGGTGGAGAAGTCAAGGAAACAACTCAAGGAAGGGAAGAACAGAGCCAAGAAGATCCGCGGAGTAAAGAAGACCAAGGCTGGCGATGCTGCCAAGGGCGGGAAGAAGAAATGAGCTTCCACACATATTGA

Protein Analysis

105

Amino Acids

11.78

Weight (kDa)

4.89

Isoelectric Point (pI)

56.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 148
AccII CGCG 1 cut(s) 244
AciI CCGC 4 cut(s) 24, 242, 244, 283
AclWI GGATC 1 cut(s) 233
AfaI GTAC 1 cut(s) 98
AfiI CCNNNNNNNGG 2 cut(s) 111, 283
AgsI TTSAA 1 cut(s) 18
AleI CACNNNNGTG 1 cut(s) 186
AluBI AGCT 1 cut(s) 300
AluI AGCT 1 cut(s) 300
Alw26I GTCTC 1 cut(s) 133
AlwI GGATC 1 cut(s) 233
ApeKI GCWGC 1 cut(s) 273
AspLEI GCGC 1 cut(s) 149
BanII GRGCYC 1 cut(s) 105
BbsI GAAGAC 1 cut(s) 261
BbvI GCAGC 1 cut(s) 260
BccI CCATC 1 cut(s) 13
BclI TGATCA 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 133
BfmI CTRYAG 1 cut(s) 109
BisI GCNGC 1 cut(s) 274
BlsI GCNGC 1 cut(s) 275
BmsI GCATC 1 cut(s) 260
BpiI GAAGAC 1 cut(s) 261
BpuEI CTTGAG 1 cut(s) 195
BsaJI CCNNGG 4 cut(s) 153, 242, 259, 277
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 283
Bse1I ACTGG 1 cut(s) 181
BseDI CCNNGG 4 cut(s) 153, 242, 259, 277
BseLI CCNNNNNNNGG 2 cut(s) 111, 283
BseNI ACTGG 1 cut(s) 181
BseXI GCAGC 1 cut(s) 260
BsgI GTGCAG 1 cut(s) 186
Bsh1236I CGCG 1 cut(s) 244
BslI CCNNNNNNNGG 2 cut(s) 111, 283
BsmAI GTCTC 1 cut(s) 133
BsmI GAATGC 1 cut(s) 91
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 2 cut(s) 117, 238
Bsp19I CCATGG 1 cut(s) 153
BspACI CCGC 4 cut(s) 24, 242, 244, 283
BspFNI CGCG 1 cut(s) 244
BspPI GGATC 1 cut(s) 233
BsrI ACTGG 1 cut(s) 181
BssECI CCNNGG 4 cut(s) 153, 242, 259, 277
BssMI GATC 2 cut(s) 117, 238
BssT1I CCWWGG 3 cut(s) 153, 259, 277
Bst4CI ACNGT 1 cut(s) 127
BstC8I GCNNGC 1 cut(s) 266
BstDSI CCRYGG 2 cut(s) 153, 242
BstFNI CGCG 1 cut(s) 244
BstHHI GCGC 1 cut(s) 149
BstKTI GATC 2 cut(s) 120, 241
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 2 cut(s) 117, 238
BstMWI GCNNNNNNNGC 3 cut(s) 155, 164, 270
BstSFI CTRYAG 1 cut(s) 109
BstUI CGCG 1 cut(s) 244
BstV1I GCAGC 1 cut(s) 260
BstV2I GAAGAC 1 cut(s) 261
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
BtgI CCRYGG 2 cut(s) 153, 242
BtgZI GCGATG 1 cut(s) 283
BtsIMutI CAGTG 1 cut(s) 51
Cac8I GCNNGC 1 cut(s) 266
CfoI GCGC 1 cut(s) 149
Cfr42I CCGCGG 1 cut(s) 245
Csp6I GTAC 1 cut(s) 97
CspCI CAANNNNNGTGG 1 cut(s) 293
CviAII CATG 1 cut(s) 154
CviJI RGCY 6 cut(s) 103, 115, 158, 231, 264, 300
CviKI_1 RGCY 6 cut(s) 103, 115, 158, 231, 264, 300
CviQI GTAC 1 cut(s) 97
DpnI GATC 2 cut(s) 119, 240
DpnII GATC 2 cut(s) 117, 238
Eco130I CCWWGG 3 cut(s) 153, 259, 277
Eco24I GRGCYC 1 cut(s) 105
EcoT14I CCWWGG 3 cut(s) 153, 259, 277
EcoT38I GRGCYC 1 cut(s) 105
ErhI CCWWGG 3 cut(s) 153, 259, 277
FaeI CATG 1 cut(s) 157
FaiI YATR 3 cut(s) 72, 155, 310
FatI CATG 1 cut(s) 153
FauI CCCGC 1 cut(s) 276
FbaI TGATCA 1 cut(s) 117
Fnu4HI GCNGC 1 cut(s) 274
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 1 cut(s) 274
FspI TGCGCA 1 cut(s) 148
GlaI GCGC 1 cut(s) 148
GluI GCNGC 1 cut(s) 274
HhaI GCGC 1 cut(s) 149
Hin1II CATG 1 cut(s) 157
Hin6I GCGC 1 cut(s) 147
HinP1I GCGC 1 cut(s) 147
HinfI GANTC 1 cut(s) 74
Hpy188III TCNNGA 1 cut(s) 121
HpyAV CCTTC 1 cut(s) 210
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4V TGCA 2 cut(s) 89, 167
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 164, 270
Hsp92II CATG 1 cut(s) 157
HspAI GCGC 1 cut(s) 147
Ksp22I TGATCA 1 cut(s) 117
KspI CCGCGG 1 cut(s) 245
Kzo9I GATC 2 cut(s) 117, 238
LpnPI CCDG 4 cut(s) 97, 106, 162, 250
Lsp1109I GCAGC 1 cut(s) 260
LweI GCATC 1 cut(s) 260
MalI GATC 2 cut(s) 119, 240
MboI GATC 2 cut(s) 117, 238
MboII GAAGA 5 cut(s) 233, 248, 266, 299, 302
MflI RGATCY 1 cut(s) 238
MhlI GDGCHC 1 cut(s) 105
MnlI CCTC 1 cut(s) 31
MslI CAYNNNNRTG 1 cut(s) 186
MspA1I CMGCKG 1 cut(s) 244
Mva1269I GAATGC 1 cut(s) 91
MvnI CGCG 1 cut(s) 244
MwoI GCNNNNNNNGC 3 cut(s) 155, 164, 270
NcoI CCATGG 1 cut(s) 153
NdeII GATC 2 cut(s) 117, 238
NlaIII CATG 1 cut(s) 157
NsbI TGCGCA 1 cut(s) 148
OliI CACNNNNGTG 1 cut(s) 186
PctI GAATGC 1 cut(s) 91
PfeI GAWTC 1 cut(s) 74
PkrI GCNGC 1 cut(s) 275
PsuI RGATCY 1 cut(s) 238
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
RseI CAYNNNNRTG 1 cut(s) 186
SacII CCGCGG 1 cut(s) 245
SatI GCNGC 1 cut(s) 274
Sau3AI GATC 2 cut(s) 117, 238
SduI GDGCHC 1 cut(s) 105
SetI ASST 2 cut(s) 190, 302
SfaNI GCATC 1 cut(s) 260
SfcI CTRYAG 1 cut(s) 109
Sfr303I CCGCGG 1 cut(s) 245
SgrBI CCGCGG 1 cut(s) 245
SmiMI CAYNNNNRTG 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 210
SmoI CTYRAG 1 cut(s) 210
SsiI CCGC 4 cut(s) 24, 242, 244, 283
StyI CCWWGG 3 cut(s) 153, 259, 277
TaaI ACNGT 1 cut(s) 127
TaqI TCGA 1 cut(s) 60
TfiI GAWTC 1 cut(s) 74
TscAI CASTG 1 cut(s) 58
TseI GCWGC 1 cut(s) 273
TspRI CASTG 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.