pycom02g00520

U1-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Forward (+)
311760 .. 312419
660 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 453 bp
ATGGAAGTAGAGGAGCACAAACTCCCGCTGGTGCTCAGCCCCACGCCACCTACACCTCTCCACCTGCTTTTCGCATGTCCTTCTCCTCCCCTCCTCCTCCGTGGGCCCCGCCATCCCCGTCCAGCATTTCGTCACTATTTCACCATTCTCTCAGGTACCCGAGAATCCAGCGAGAGAGTATATTTTGCTGTTTTAACTGCAAGTACTTTCCCAATTCAAACTTCAAAGCGCAACGTTCTATTGATTCCATGGAGTTCAAATTCCGATCGGTGGACGAGAGGCCGCCGCCGCCGTCGCCTTCTTCCGCCGTCAGCTGCTTCTCCTCCGAGCAAGCCGCATTCCGAGGCCAAACAGCTGCTCTTATTACTTCGACTCTGGCGACGATTTCAACACAACCGAATTTTGCGCCACCACGAACGCCGCCGCCGTCGATTTTCTGGAATCCGGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-met

Protein Analysis

151

Amino Acids

17.68

Weight (kDa)

12.0

Isoelectric Point (pI)

101.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 72
Acc36I ACCTGC 1 cut(s) 72
Acc65I GGTACC 1 cut(s) 155
AccB1I GGYRCC 1 cut(s) 155
AciI CCGC 9 cut(s) 26, 109, 283, 286, 289, 305, 335, 421, 424
AclI AACGTT 1 cut(s) 234
AcsI RAATTY 2 cut(s) 259, 399
AfaI GTAC 2 cut(s) 157, 205
AfiI CCNNNNNNNGG 1 cut(s) 270
AgsI TTSAA 4 cut(s) 218, 225, 258, 389
AjuI GAANNNNNNNTTGG 2 cut(s) 205, 237
AluBI AGCT 2 cut(s) 314, 355
AluI AGCT 2 cut(s) 314, 355
Alw21I GWGCWC 2 cut(s) 18, 36
Ama87I CYCGRG 1 cut(s) 159
AoxI GGCC 3 cut(s) 104, 280, 345
ApaI GGGCCC 1 cut(s) 108
ApeKI GCWGC 2 cut(s) 314, 355
ApoI RAATTY 2 cut(s) 259, 399
Asp718I GGTACC 1 cut(s) 155
AspLEI GCGC 2 cut(s) 231, 408
AspS9I GGNCC 2 cut(s) 104, 105
AsuHPI GGTGA 1 cut(s) 133
AvaI CYCGRG 1 cut(s) 159
BaeGI GKGCMC 1 cut(s) 108
BanI GGYRCC 1 cut(s) 155
BanII GRGCYC 1 cut(s) 108
Bbv12I GWGCWC 2 cut(s) 18, 36
BbvI GCAGC 2 cut(s) 301, 342
BccI CCATC 1 cut(s) 120
BceAI ACGGC 3 cut(s) 276, 292, 411
BfuAI ACCTGC 1 cut(s) 72
BisI GCNGC 8 cut(s) 283, 286, 289, 315, 335, 356, 421, 424
BlpI GCTNAGC 1 cut(s) 35
BlsI GCNGC 8 cut(s) 284, 287, 290, 316, 336, 357, 422, 425
BmcAI AGTACT 1 cut(s) 205
BmeT110I CYCGRG 1 cut(s) 159
BmgT120I GGNCC 2 cut(s) 104, 105
BmiI GGNNCC 3 cut(s) 106, 107, 157
Bpu1102I GCTNAGC 1 cut(s) 35
BsaJI CCNNGG 3 cut(s) 100, 248, 342
Bsc4I CCNNNNNNNGG 1 cut(s) 270
BseDI CCNNGG 3 cut(s) 100, 248, 342
BseGI GGATG 1 cut(s) 112
BseLI CCNNNNNNNGG 1 cut(s) 270
BseMII CTCAG 2 cut(s) 49, 165
BseRI GAGGAG 5 cut(s) 26, 75, 83, 86, 312
BseSI GKGCMC 1 cut(s) 108
BseXI GCAGC 2 cut(s) 301, 342
Bsh1285I CGRYCG 1 cut(s) 268
BshFI GGCC 3 cut(s) 106, 282, 347
BshNI GGYRCC 1 cut(s) 155
BsiEI CGRYCG 1 cut(s) 268
BsiHKAI GWGCWC 2 cut(s) 18, 36
BsiHKCI CYCGRG 1 cut(s) 159
BsiSI CCGG 1 cut(s) 445
BslI CCNNNNNNNGG 1 cut(s) 270
BsmI GAATGC 1 cut(s) 337
BsnI GGCC 3 cut(s) 106, 282, 347
BsoBI CYCGRG 1 cut(s) 159
Bsp120I GGGCCC 1 cut(s) 104
Bsp1286I GDGCHC 3 cut(s) 18, 36, 108
Bsp143I GATC 1 cut(s) 265
Bsp1720I GCTNAGC 1 cut(s) 35
Bsp19I CCATGG 1 cut(s) 248
BspACI CCGC 9 cut(s) 26, 109, 283, 286, 289, 305, 335, 421, 424
BspANI GGCC 3 cut(s) 106, 282, 347
BspCNI CTCAG 2 cut(s) 48, 164
BspLI GGNNCC 3 cut(s) 106, 107, 157
BspMI ACCTGC 1 cut(s) 72
BspT107I GGYRCC 1 cut(s) 155
BssECI CCNNGG 3 cut(s) 100, 248, 342
BssMI GATC 1 cut(s) 265
BssT1I CCWWGG 1 cut(s) 248
BstC8I GCNNGC 1 cut(s) 332
BstDEI CTNAG 2 cut(s) 35, 151
BstDSI CCRYGG 2 cut(s) 100, 248
BstF5I GGATG 1 cut(s) 112
BstHHI GCGC 2 cut(s) 231, 408
BstKTI GATC 1 cut(s) 268
BstMBI GATC 1 cut(s) 265
BstMCI CGRYCG 1 cut(s) 268
BstMWI GCNNNNNNNGC 2 cut(s) 288, 294
BstNSI RCATGY 1 cut(s) 78
BstSLI GKGCMC 1 cut(s) 108
BstV1I GCAGC 2 cut(s) 301, 342
BsuRI GGCC 3 cut(s) 106, 282, 347
BtgI CCRYGG 2 cut(s) 100, 248
BtsCI GGATG 1 cut(s) 112
BveI ACCTGC 1 cut(s) 72
Cac8I GCNNGC 1 cut(s) 332
CfoI GCGC 2 cut(s) 231, 408
Cfr13I GGNCC 2 cut(s) 104, 105
Csp6I GTAC 2 cut(s) 156, 204
CviAII CATG 2 cut(s) 75, 249
CviJI RGCY 8 cut(s) 39, 106, 282, 314, 334, 347, 355, 448
CviKI_1 RGCY 8 cut(s) 39, 106, 282, 314, 334, 347, 355, 448
CviQI GTAC 2 cut(s) 156, 204
DdeI CTNAG 2 cut(s) 35, 151
DpnI GATC 1 cut(s) 267
DpnII GATC 1 cut(s) 265
EciI GGCGGA 1 cut(s) 294
Eco130I CCWWGG 1 cut(s) 248
Eco24I GRGCYC 1 cut(s) 108
Eco88I CYCGRG 1 cut(s) 159
EcoO109I RGGNCCY 1 cut(s) 105
EcoT14I CCWWGG 1 cut(s) 248
EcoT38I GRGCYC 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 248
FaeI CATG 2 cut(s) 78, 252
FaiI YATR 4 cut(s) 76, 181, 250, 451
FatI CATG 2 cut(s) 74, 248
FauI CCCGC 2 cut(s) 33, 116
Fnu4HI GCNGC 8 cut(s) 283, 286, 289, 315, 335, 356, 421, 424
FokI GGATG 1 cut(s) 99
FriOI GRGCYC 1 cut(s) 108
Fsp4HI GCNGC 8 cut(s) 283, 286, 289, 315, 335, 356, 421, 424
GlaI GCGC 2 cut(s) 230, 407
GluI GCNGC 8 cut(s) 283, 286, 289, 315, 335, 356, 421, 424
HaeIII GGCC 3 cut(s) 106, 282, 347
HapII CCGG 1 cut(s) 445
HhaI GCGC 2 cut(s) 231, 408
Hin1II CATG 2 cut(s) 78, 252
Hin6I GCGC 2 cut(s) 229, 406
HinP1I GCGC 2 cut(s) 229, 406
HinfI GANTC 4 cut(s) 164, 244, 372, 441
HpaII CCGG 1 cut(s) 445
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 1 cut(s) 273
Hpy188I TCNGA 3 cut(s) 265, 327, 343
Hpy188III TCNNGA 1 cut(s) 438
Hpy8I GTNNAC 1 cut(s) 273
Hpy99I CGWCG 3 cut(s) 297, 384, 432
HpyAV CCTTC 2 cut(s) 90, 308
HpyCH4IV ACGT 1 cut(s) 234
HpyCH4V TGCA 1 cut(s) 200
HpyF10VI GCNNNNNNNGC 2 cut(s) 288, 294
HpyF3I CTNAG 2 cut(s) 35, 151
HpySE526I ACGT 1 cut(s) 234
Hsp92II CATG 2 cut(s) 78, 252
HspAI GCGC 2 cut(s) 229, 406
KpnI GGTACC 1 cut(s) 159
Kzo9I GATC 1 cut(s) 265
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 7 cut(s) 14, 77, 135, 138, 181, 361, 423
Lsp1109I GCAGC 2 cut(s) 301, 342
MaeII ACGT 1 cut(s) 234
MaeIII GTNAC 1 cut(s) 131
MalI GATC 1 cut(s) 267
MboI GATC 1 cut(s) 265
MboII GAAGA 1 cut(s) 293
MhlI GDGCHC 3 cut(s) 18, 36, 108
MluCI AATT 3 cut(s) 213, 259, 399
MlyI GAGTC 1 cut(s) 366
MnlI CCTC 9 cut(s) 4, 66, 96, 101, 104, 107, 272, 333, 337
MseI TTAA 1 cut(s) 194
MspA1I CMGCKG 3 cut(s) 28, 314, 355
MspI CCGG 1 cut(s) 445
Mva1269I GAATGC 1 cut(s) 337
MwoI GCNNNNNNNGC 2 cut(s) 288, 294
NcoI CCATGG 1 cut(s) 248
NdeII GATC 1 cut(s) 265
NlaIII CATG 2 cut(s) 78, 252
NlaIV GGNNCC 3 cut(s) 106, 107, 157
NmuCI GTSAC 1 cut(s) 131
NspI RCATGY 1 cut(s) 78
PaqCI CACCTGC 1 cut(s) 72
PcsI WCGNNNNNNNCGW 2 cut(s) 376, 424
PctI GAATGC 1 cut(s) 337
PfeI GAWTC 3 cut(s) 164, 244, 441
PkrI GCNGC 8 cut(s) 284, 287, 290, 316, 336, 357, 422, 425
Ple19I CGATCG 1 cut(s) 268
PleI GAGTC 1 cut(s) 366
PpsI GAGTC 1 cut(s) 366
Psp1406I AACGTT 1 cut(s) 234
PspN4I GGNNCC 3 cut(s) 106, 107, 157
PspOMI GGGCCC 1 cut(s) 104
PspPI GGNCC 2 cut(s) 104, 105
PvuI CGATCG 1 cut(s) 268
PvuII CAGCTG 2 cut(s) 314, 355
RsaI GTAC 2 cut(s) 157, 205
RsaNI GTAC 2 cut(s) 156, 204
SaqAI TTAA 1 cut(s) 194
SatI GCNGC 8 cut(s) 283, 286, 289, 315, 335, 356, 421, 424
Sau3AI GATC 1 cut(s) 265
Sau96I GGNCC 2 cut(s) 104, 105
ScaI AGTACT 1 cut(s) 205
SchI GAGTC 1 cut(s) 366
SduI GDGCHC 3 cut(s) 18, 36, 108
SetI ASST 7 cut(s) 52, 58, 66, 157, 237, 316, 357
Sse9I AATT 3 cut(s) 213, 259, 399
SsiI CCGC 9 cut(s) 26, 109, 283, 286, 289, 305, 335, 421, 424
StyI CCWWGG 1 cut(s) 248
TaiI ACGT 1 cut(s) 237
TaqI TCGA 2 cut(s) 370, 430
TasI AATT 3 cut(s) 213, 259, 399
TatI WGTACW 1 cut(s) 203
TauI GCSGC 6 cut(s) 285, 288, 291, 337, 423, 426
TfiI GAWTC 3 cut(s) 164, 244, 441
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TseFI GTSAC 1 cut(s) 131
TseI GCWGC 2 cut(s) 314, 355
Tsp45I GTSAC 1 cut(s) 131
TspGWI ACGGA 1 cut(s) 89
XapI RAATTY 2 cut(s) 259, 399
XceI RCATGY 1 cut(s) 78
ZrmI AGTACT 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.