pycom02g01120

DNA replication licensing factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Reverse (-)
624919 .. 626479
1561 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 984 bp
ATGGGCCGGCTTGTCTGTCCCGGCCCAATTCACAAGTCCATTATTAACCAAGGAGTCACGTGCTACTGCCAGATATTATCAACCTCTTCCTCTTTCCCGCCAAATCATTCCCGCCAAAACGGCGCGCTCCTCTTCCGCGCGGTAGAGAGAGAGAGCAGAGACATGTCAGGGTGGGACGAAGGAGCGATCTACTACAGCGACCAAGCGCAGTCGCTTGGCGGCGACGGCGGAGACGCCGGAAGCAACGCCGCAGCCGCCACCCGCCACTCCGTTCTTCAGAAATTCAAGGAATTCATCCGTAGCTTCGAGACGCAGAAAAATGTGTTTTCGTACAGGGAGAGCCTCCTCCACAACGCTAAGTACCTTCTCGTCGACATCGAAGACCTCGACTCCTTCGACGCTGACCTCGTCGCAAAGCTCCGCTCTGCCCCATCCGATTACTTGCCTCTGTTTGAAAACGCCGCCGGTCAGGTTTTGGCGAATTTAAAGACGAAAGTGCCCGGAAATGAAGGGAAATTGGAGGAGCGGGTGCCGGAGGATGTTCAGATCTTGCTGACGTCCAAAGAAGACCCGGCGTCTATGCGCCAGCTTGGGGCACAATGTATATCGAAACTCATCAAGGTTTCTGGGATCACTATAGCTGCTTCGAGGGTCAAGGCGAAGGCAACTTATGTGATTGTCATGTGTAAGAACTGTAAAAATGTGCAAAGGGTACCTTGCCGGCCAGGCCTTGGTGGCGCAATTGTCCCTCGCTCTTGCAACCATATTCCTCAGCCTGGAGAAGAACCTTGTCCGCTTGATCGATCGTCGGTTGTGGTTCCTGATAAGAGCAAGTATGTTGATCAGCAAACCTTGAAATTGCAAGAGAATCCAGAGGATGTACCCACCGGAGAGCTTCCAAGAAATATGCTTCTATCCGTGGATCGATCATCTCGTTCAGACAATTGTGCCTGGCACAAGATTAACCATCATGGGCATTTATAG

Protein Analysis

328

Amino Acids

35.91

Weight (kDa)

8.0

Isoelectric Point (pI)

47.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MCM_N PF14551 93 - 182 4e-14 MCM N-terminal domain
MCM_OB PF17207 194 - 310 5.8e-26 MCM OB domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 560
Acc65I GGTACC 1 cut(s) 712
AccB1I GGYRCC 2 cut(s) 529, 712
AccB7I CCANNNNNTGG 1 cut(s) 731
AccBSI CCGCTC 2 cut(s) 423, 526
AccI GTMKAC 1 cut(s) 372
AccII CGCG 3 cut(s) 125, 138, 140
AclWI GGATC 2 cut(s) 638, 930
AcoI YGGCCR 1 cut(s) 722
AcsI RAATTY 3 cut(s) 281, 290, 481
AcuI CTGAAG 1 cut(s) 260
AcvI CACGTG 1 cut(s) 60
AcyI GRCGYC 3 cut(s) 234, 557, 575
AfaI GTAC 4 cut(s) 332, 362, 714, 882
AfiI CCNNNNNNNGG 3 cut(s) 592, 731, 776
AflIII ACRYGT 1 cut(s) 162
AgsI TTSAA 3 cut(s) 286, 455, 856
AhdI GACNNNNNGTC 1 cut(s) 574
AjnI CCWGG 3 cut(s) 724, 775, 950
AluBI AGCT 5 cut(s) 303, 418, 589, 641, 895
AluI AGCT 5 cut(s) 303, 418, 589, 641, 895
Alw26I GTCTC 3 cut(s) 153, 225, 302
AlwI GGATC 2 cut(s) 638, 930
AoxI GGCC 4 cut(s) 4, 22, 722, 727
ApeKI GCWGC 2 cut(s) 251, 641
ApoI RAATTY 3 cut(s) 281, 290, 481
Asp718I GGTACC 1 cut(s) 712
AspLEI GCGC 6 cut(s) 125, 127, 140, 208, 585, 740
AspS9I GGNCC 2 cut(s) 4, 23
AsuC2I CCSGG 3 cut(s) 21, 501, 572
BaeGI GKGCMC 2 cut(s) 501, 598
BanI GGYRCC 2 cut(s) 529, 712
BbrPI CACGTG 1 cut(s) 60
BbsI GAAGAC 2 cut(s) 387, 573
BbvCI CCTCAGC 1 cut(s) 771
BbvI GCAGC 2 cut(s) 263, 628
BccI CCATC 2 cut(s) 439, 975
BceAI ACGGC 2 cut(s) 136, 241
BciT130I CCWGG 3 cut(s) 726, 777, 952
BclI TGATCA 1 cut(s) 841
BcnI CCSGG 3 cut(s) 21, 501, 572
BcoDI GTCTC 3 cut(s) 153, 225, 302
BfmI CTRYAG 2 cut(s) 193, 636
BglI GCCNNNNNGGC 3 cut(s) 120, 726, 735
BglII AGATCT 1 cut(s) 546
BisI GCNGC 6 cut(s) 220, 249, 252, 255, 462, 642
BlsI GCNGC 6 cut(s) 221, 250, 253, 256, 463, 643
Bme1390I CCNGG 6 cut(s) 21, 501, 572, 726, 777, 952
BmeRI GACNNNNNGTC 1 cut(s) 574
BmgT120I GGNCC 2 cut(s) 4, 23
BmiI GGNNCC 3 cut(s) 531, 714, 819
BmrFI CCNGG 6 cut(s) 21, 501, 572, 726, 777, 952
BpiI GAAGAC 2 cut(s) 387, 573
BpmI CTGGAG 1 cut(s) 798
Bpu10I CCTNAGC 1 cut(s) 771
BpuMI CCSGG 3 cut(s) 21, 501, 572
Bsa29I ATCGAT 2 cut(s) 802, 925
BsaAI YACGTR 1 cut(s) 60
BsaHI GRCGYC 3 cut(s) 234, 557, 575
BsaJI CCNNGG 3 cut(s) 49, 730, 918
BsaWI WCCGGW 1 cut(s) 887
BsaXI ACNNNNNCTCC 2 cut(s) 374, 404
Bsc4I CCNNNNNNNGG 3 cut(s) 592, 731, 776
Bse118I RCCGGY 3 cut(s) 6, 464, 720
BseBI CCWGG 3 cut(s) 726, 777, 952
BseCI ATCGAT 2 cut(s) 802, 925
BseDI CCNNGG 3 cut(s) 49, 730, 918
BseGI GGATG 4 cut(s) 294, 431, 544, 883
BseLI CCNNNNNNNGG 3 cut(s) 592, 731, 776
BseMII CTCAG 1 cut(s) 785
BsePI GCGCGC 1 cut(s) 123
BseRI GAGGAG 3 cut(s) 119, 335, 536
BseSI GKGCMC 2 cut(s) 501, 598
BseXI GCAGC 2 cut(s) 263, 628
Bsh1236I CGCG 3 cut(s) 125, 138, 140
Bsh1285I CGRYCG 1 cut(s) 806
BshFI GGCC 4 cut(s) 6, 24, 724, 729
BshNI GGYRCC 2 cut(s) 529, 712
BshVI ATCGAT 2 cut(s) 802, 925
BsiEI CGRYCG 1 cut(s) 806
BsiSI CCGG 9 cut(s) 7, 21, 237, 465, 501, 533, 572, 721, 888
BslFI GGGAC 3 cut(s) 3, 188, 731
BslI CCNNNNNNNGG 3 cut(s) 592, 731, 776
BsmAI GTCTC 3 cut(s) 153, 225, 302
BsmBI CGTCTC 2 cut(s) 225, 302
BsmFI GGGAC 3 cut(s) 3, 188, 731
BsnI GGCC 4 cut(s) 6, 24, 724, 729
Bsp1286I GDGCHC 2 cut(s) 501, 598
Bsp143I GATC 8 cut(s) 186, 546, 630, 799, 803, 841, 922, 926
BspANI GGCC 4 cut(s) 6, 24, 724, 729
BspCNI CTCAG 1 cut(s) 784
BspDI ATCGAT 2 cut(s) 802, 925
BspFNI CGCG 3 cut(s) 125, 138, 140
BspLI GGNNCC 3 cut(s) 531, 714, 819
BspPI GGATC 2 cut(s) 638, 930
BspT107I GGYRCC 2 cut(s) 529, 712
BsrBI CCGCTC 2 cut(s) 423, 526
BsrFI RCCGGY 3 cut(s) 6, 464, 720
BssAI RCCGGY 3 cut(s) 6, 464, 720
BssECI CCNNGG 3 cut(s) 49, 730, 918
BssHII GCGCGC 1 cut(s) 123
BssMI GATC 8 cut(s) 186, 546, 630, 799, 803, 841, 922, 926
BssNI GRCGYC 3 cut(s) 234, 557, 575
BssT1I CCWWGG 2 cut(s) 49, 730
Bst2UI CCWGG 3 cut(s) 726, 777, 952
Bst4CI ACNGT 1 cut(s) 695
Bst6I CTCTTC 2 cut(s) 91, 137
BstACI GRCGYC 3 cut(s) 234, 557, 575
BstBAI YACGTR 1 cut(s) 60
BstC8I GCNNGC 4 cut(s) 8, 125, 587, 722
BstDEI CTNAG 2 cut(s) 357, 771
BstDSI CCRYGG 1 cut(s) 918
BstF5I GGATG 4 cut(s) 294, 431, 544, 883
BstFNI CGCG 3 cut(s) 125, 138, 140
BstHHI GCGC 6 cut(s) 125, 127, 140, 208, 585, 740
BstKTI GATC 8 cut(s) 189, 549, 633, 802, 806, 844, 925, 929
BstMAI GTCTC 3 cut(s) 153, 225, 302
BstMBI GATC 8 cut(s) 186, 546, 630, 799, 803, 841, 922, 926
BstMCI CGRYCG 1 cut(s) 806
BstMWI GCNNNNNNNGC 5 cut(s) 120, 225, 254, 726, 735
BstNI CCWGG 3 cut(s) 726, 777, 952
BstNSI RCATGY 1 cut(s) 166
BstSCI CCNGG 6 cut(s) 19, 499, 570, 724, 775, 950
BstSFI CTRYAG 2 cut(s) 193, 636
BstSLI GKGCMC 2 cut(s) 501, 598
BstUI CGCG 3 cut(s) 125, 138, 140
BstV1I GCAGC 2 cut(s) 263, 628
BstV2I GAAGAC 2 cut(s) 387, 573
BstX2I RGATCY 1 cut(s) 546
BstYI RGATCY 1 cut(s) 546
Bsu15I ATCGAT 2 cut(s) 802, 925
BsuRI GGCC 4 cut(s) 6, 24, 724, 729
BsuTUI ATCGAT 2 cut(s) 802, 925
BtgI CCRYGG 1 cut(s) 918
BtsCI GGATG 4 cut(s) 294, 431, 544, 883
Cac8I GCNNGC 4 cut(s) 8, 125, 587, 722
CfoI GCGC 6 cut(s) 125, 127, 140, 208, 585, 740
Cfr10I RCCGGY 3 cut(s) 6, 464, 720
Cfr13I GGNCC 2 cut(s) 4, 23
ClaI ATCGAT 2 cut(s) 802, 925
CseI GACGC 4 cut(s) 242, 319, 407, 564
Csp6I GTAC 4 cut(s) 331, 361, 713, 881
CviAII CATG 3 cut(s) 163, 682, 971
CviQI GTAC 4 cut(s) 331, 361, 713, 881
DdeI CTNAG 2 cut(s) 357, 771
DpnI GATC 8 cut(s) 188, 548, 632, 801, 805, 843, 924, 928
DpnII GATC 8 cut(s) 186, 546, 630, 799, 803, 841, 922, 926
DraI TTTAAA 1 cut(s) 486
DriI GACNNNNNGTC 1 cut(s) 574
EaeI YGGCCR 1 cut(s) 722
Eam1104I CTCTTC 2 cut(s) 91, 137
Eam1105I GACNNNNNGTC 1 cut(s) 574
EarI CTCTTC 2 cut(s) 91, 137
EciI GGCGGA 1 cut(s) 243
Eco130I CCWWGG 2 cut(s) 49, 730
Eco147I AGGCCT 1 cut(s) 729
Eco57I CTGAAG 1 cut(s) 260
Eco72I CACGTG 1 cut(s) 60
EcoRI GAATTC 1 cut(s) 290
EcoRII CCWGG 3 cut(s) 724, 775, 950
EcoT14I CCWWGG 2 cut(s) 49, 730
ErhI CCWWGG 2 cut(s) 49, 730
Esp3I CGTCTC 2 cut(s) 225, 302
FaeI CATG 3 cut(s) 166, 685, 974
FalI AAGNNNNNCTT 2 cut(s) 700, 732
FaqI GGGAC 3 cut(s) 3, 188, 731
FatI CATG 3 cut(s) 162, 681, 970
FauI CCCGC 4 cut(s) 105, 119, 269, 519
FbaI TGATCA 1 cut(s) 841
FblI GTMKAC 1 cut(s) 372
Fnu4HI GCNGC 6 cut(s) 220, 249, 252, 255, 462, 642
FokI GGATG 4 cut(s) 281, 418, 551, 890
Fsp4HI GCNGC 6 cut(s) 220, 249, 252, 255, 462, 642
GlaI GCGC 6 cut(s) 124, 126, 139, 207, 584, 739
GluI GCNGC 6 cut(s) 220, 249, 252, 255, 462, 642
GsuI CTGGAG 1 cut(s) 798
HaeIII GGCC 4 cut(s) 6, 24, 724, 729
HapII CCGG 9 cut(s) 7, 21, 237, 465, 501, 533, 572, 721, 888
HgaI GACGC 4 cut(s) 242, 319, 407, 564
HhaI GCGC 6 cut(s) 125, 127, 140, 208, 585, 740
Hin1I GRCGYC 3 cut(s) 234, 557, 575
Hin1II CATG 3 cut(s) 166, 685, 974
Hin6I GCGC 6 cut(s) 123, 125, 138, 206, 583, 738
HinP1I GCGC 6 cut(s) 123, 125, 138, 206, 583, 738
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HinfI GANTC 3 cut(s) 54, 389, 868
HpaII CCGG 9 cut(s) 7, 21, 237, 465, 501, 533, 572, 721, 888
Hpy166II GTNNAC 1 cut(s) 373
Hpy188I TCNGA 4 cut(s) 279, 436, 546, 940
Hpy188III TCNNGA 3 cut(s) 307, 821, 872
Hpy8I GTNNAC 1 cut(s) 373
Hpy99I CGWCG 5 cut(s) 227, 374, 401, 413, 811
HpyAV CCTTC 5 cut(s) 173, 374, 403, 503, 655
HpyCH4III ACNGT 1 cut(s) 695
HpyCH4IV ACGT 2 cut(s) 59, 557
HpyCH4V TGCA 3 cut(s) 706, 759, 862
HpyF10VI GCNNNNNNNGC 5 cut(s) 120, 225, 254, 726, 735
HpyF3I CTNAG 2 cut(s) 357, 771
HpySE526I ACGT 2 cut(s) 59, 557
Hsp92I GRCGYC 3 cut(s) 234, 557, 575
Hsp92II CATG 3 cut(s) 166, 685, 974
HspAI GCGC 6 cut(s) 123, 125, 138, 206, 583, 738
KpnI GGTACC 1 cut(s) 716
KroI GCCGGC 2 cut(s) 6, 720
KroNI GCCGGC 2 cut(s) 8, 722
Ksp22I TGATCA 1 cut(s) 841
Kzo9I GATC 8 cut(s) 186, 546, 630, 799, 803, 841, 922, 926
LmnI GCTCC 4 cut(s) 132, 182, 423, 523
Lsp1109I GCAGC 2 cut(s) 263, 628
MaeII ACGT 2 cut(s) 59, 557
MaeIII GTNAC 1 cut(s) 55
MalI GATC 8 cut(s) 188, 548, 632, 801, 805, 843, 924, 928
MbiI CCGCTC 2 cut(s) 423, 526
MboI GATC 8 cut(s) 186, 546, 630, 799, 803, 841, 922, 926
MboII GAAGA 6 cut(s) 78, 124, 266, 392, 578, 794
MfeI CAATTG 2 cut(s) 741, 943
MflI RGATCY 1 cut(s) 546
MhlI GDGCHC 2 cut(s) 501, 598
MluCI AATT 8 cut(s) 27, 281, 290, 481, 515, 741, 857, 943
MlyI GAGTC 2 cut(s) 63, 383
MroNI GCCGGC 2 cut(s) 6, 720
MseI TTAA 3 cut(s) 45, 485, 963
MspI CCGG 9 cut(s) 7, 21, 237, 465, 501, 533, 572, 721, 888
MspR9I CCNGG 6 cut(s) 21, 501, 572, 726, 777, 952
MunI CAATTG 2 cut(s) 741, 943
MvaI CCWGG 3 cut(s) 726, 777, 952
MvnI CGCG 3 cut(s) 125, 138, 140
MwoI GCNNNNNNNGC 5 cut(s) 120, 225, 254, 726, 735
NaeI GCCGGC 2 cut(s) 8, 722
NciI CCSGG 3 cut(s) 21, 501, 572
NdeII GATC 8 cut(s) 186, 546, 630, 799, 803, 841, 922, 926
NgoMIV GCCGGC 2 cut(s) 6, 720
NlaIII CATG 3 cut(s) 166, 685, 974
NlaIV GGNNCC 3 cut(s) 531, 714, 819
NmuCI GTSAC 1 cut(s) 55
NspI RCATGY 1 cut(s) 166
PauI GCGCGC 1 cut(s) 123
PceI AGGCCT 1 cut(s) 729
PciI ACATGT 1 cut(s) 162
PcsI WCGNNNNNNNCGW 5 cut(s) 375, 384, 393, 405, 931
PdiI GCCGGC 2 cut(s) 8, 722
PfeI GAWTC 1 cut(s) 868
PflFI GACNNNGTC 1 cut(s) 407
PflMI CCANNNNNTGG 1 cut(s) 731
PkrI GCNGC 6 cut(s) 221, 250, 253, 256, 463, 643
Ple19I CGATCG 1 cut(s) 806
PleI GAGTC 2 cut(s) 62, 383
PmaCI CACGTG 1 cut(s) 60
PmlI CACGTG 1 cut(s) 60
PpsI GAGTC 2 cut(s) 62, 383
Ppu21I YACGTR 1 cut(s) 60
PscI ACATGT 1 cut(s) 162
Psp6I CCWGG 3 cut(s) 724, 775, 950
PspCI CACGTG 1 cut(s) 60
PspGI CCWGG 3 cut(s) 724, 775, 950
PspN4I GGNNCC 3 cut(s) 531, 714, 819
PspPI GGNCC 2 cut(s) 4, 23
PsuI RGATCY 1 cut(s) 546
PsyI GACNNNGTC 1 cut(s) 407
PteI GCGCGC 1 cut(s) 123
PvuI CGATCG 1 cut(s) 806
RsaI GTAC 4 cut(s) 332, 362, 714, 882
RsaNI GTAC 4 cut(s) 331, 361, 713, 881
SalI GTCGAC 1 cut(s) 371
SaqAI TTAA 3 cut(s) 45, 485, 963
SatI GCNGC 6 cut(s) 220, 249, 252, 255, 462, 642
Sau3AI GATC 8 cut(s) 186, 546, 630, 799, 803, 841, 922, 926
Sau96I GGNCC 2 cut(s) 4, 23
SchI GAGTC 2 cut(s) 63, 383
ScrFI CCNGG 6 cut(s) 21, 501, 572, 726, 777, 952
SduI GDGCHC 2 cut(s) 501, 598
SfcI CTRYAG 2 cut(s) 193, 636
Sse9I AATT 8 cut(s) 27, 281, 290, 481, 515, 741, 857, 943
SseBI AGGCCT 1 cut(s) 729
StuI AGGCCT 1 cut(s) 729
StyD4I CCNGG 6 cut(s) 19, 499, 570, 724, 775, 950
StyI CCWWGG 2 cut(s) 49, 730
TaaI ACNGT 1 cut(s) 695
TaiI ACGT 2 cut(s) 62, 560
TaqI TCGA 9 cut(s) 306, 372, 378, 387, 396, 608, 647, 802, 925
TasI AATT 8 cut(s) 27, 281, 290, 481, 515, 741, 857, 943
TauI GCSGC 4 cut(s) 222, 251, 257, 464
TfiI GAWTC 1 cut(s) 868
Tru1I TTAA 3 cut(s) 45, 485, 963
Tru9I TTAA 3 cut(s) 45, 485, 963
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 2 cut(s) 251, 641
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 2 cut(s) 283, 522
TspGWI ACGGA 3 cut(s) 259, 287, 907
Tth111I GACNNNGTC 1 cut(s) 407
Van91I CCANNNNNTGG 1 cut(s) 731
XapI RAATTY 3 cut(s) 281, 290, 481
XceI RCATGY 1 cut(s) 166
XmiI GTMKAC 1 cut(s) 372
ZraI GACGTC 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.