pycom02g02100

Cyclic phosphodiesterase-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Forward (+)
1258260 .. 1258625
366 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 366 bp
ATGGTGGTATGCTCTCATCACCAATCTGAGTTTTGTATTGAAGCACCTCTCCAACTCCGCCAACAACCACCTCACCACTCGCAACCTCCTTTTCAAGTGATAGTAGTGCAGTGGCAGCATGAGGAGGAGGAGGAGGAAGAAACTGAACAAGTATTCTCGTTGCTTAAGTTATGCAAAGACGATGATAATATCAATGACGAGGAAAGCAATAGCTGCTCTTTTGTTGGTGTCCAGGACATCATTGTTCCTCACTCTTTTATTCAAAAGGTCCAGAAAGTCCCGAAAGAACTGGATATTGTAGGCCACTGTAATGGCATCGTTTTGATGACCCAGAAGGCCATCATTTATTTCGATACAAGTCGCTAG

Protein Analysis

122

Amino Acids

13.97

Weight (kDa)

4.77

Isoelectric Point (pI)

62.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 58
AflII CTTAAG 1 cut(s) 164
AgsI TTSAA 3 cut(s) 41, 95, 263
AjnI CCWGG 1 cut(s) 231
AluBI AGCT 1 cut(s) 213
AluI AGCT 1 cut(s) 213
AoxI GGCC 2 cut(s) 301, 336
ApeKI GCWGC 2 cut(s) 115, 213
AspS9I GGNCC 1 cut(s) 268
AsuHPI GGTGA 2 cut(s) 11, 65
AvaII GGWCC 1 cut(s) 268
BbvI GCAGC 2 cut(s) 127, 200
BccI CCATC 1 cut(s) 347
BciT130I CCWGG 1 cut(s) 233
BfaI CTAG 1 cut(s) 364
BfrI CTTAAG 1 cut(s) 164
BisI GCNGC 2 cut(s) 116, 214
BlsI GCNGC 2 cut(s) 117, 215
Bme1390I CCNGG 1 cut(s) 233
Bme18I GGWCC 1 cut(s) 268
BmgT120I GGNCC 1 cut(s) 268
BmrFI CCNGG 1 cut(s) 233
BmsI GCATC 1 cut(s) 324
Bse1I ACTGG 1 cut(s) 294
BseBI CCWGG 1 cut(s) 233
BseMII CTCAG 1 cut(s) 18
BseNI ACTGG 1 cut(s) 294
BseRI GAGGAG 4 cut(s) 137, 140, 143, 146
BseXI GCAGC 2 cut(s) 127, 200
BsgI GTGCAG 1 cut(s) 128
BshFI GGCC 2 cut(s) 303, 338
BslFI GGGAC 1 cut(s) 263
BsmFI GGGAC 1 cut(s) 263
BsnI GGCC 2 cut(s) 303, 338
BspACI CCGC 1 cut(s) 58
BspANI GGCC 2 cut(s) 303, 338
BspCNI CTCAG 1 cut(s) 19
BspTI CTTAAG 1 cut(s) 164
BsrI ACTGG 1 cut(s) 294
Bst2UI CCWGG 1 cut(s) 233
Bst4CI ACNGT 1 cut(s) 308
BstAFI CTTAAG 1 cut(s) 164
BstAPI GCANNNNNTGC 1 cut(s) 213
BstDEI CTNAG 1 cut(s) 27
BstMWI GCNNNNNNNGC 2 cut(s) 115, 213
BstNI CCWGG 1 cut(s) 233
BstSCI CCNGG 1 cut(s) 231
BstV1I GCAGC 2 cut(s) 127, 200
BstXI CCANNNNNNTGG 1 cut(s) 311
BsuRI GGCC 2 cut(s) 303, 338
BtsI GCAGTG 1 cut(s) 116
BtsIMutI CAGTG 2 cut(s) 116, 304
Cfr13I GGNCC 1 cut(s) 268
CviAII CATG 1 cut(s) 119
CviJI RGCY 3 cut(s) 213, 303, 338
CviKI_1 RGCY 3 cut(s) 213, 303, 338
DdeI CTNAG 1 cut(s) 27
EciI GGCGGA 1 cut(s) 47
Eco47I GGWCC 1 cut(s) 268
EcoRII CCWGG 1 cut(s) 231
FaeI CATG 1 cut(s) 122
FaiI YATR 3 cut(s) 10, 120, 172
FaqI GGGAC 1 cut(s) 263
FatI CATG 1 cut(s) 118
Fnu4HI GCNGC 2 cut(s) 116, 214
Fsp4HI GCNGC 2 cut(s) 116, 214
FspBI CTAG 1 cut(s) 364
GluI GCNGC 2 cut(s) 116, 214
HaeIII GGCC 2 cut(s) 303, 338
Hin1II CATG 1 cut(s) 122
HphI GGTGA 2 cut(s) 11, 65
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 2 cut(s) 271, 280
HpyAV CCTTC 1 cut(s) 328
HpyCH4III ACNGT 1 cut(s) 308
HpyCH4V TGCA 2 cut(s) 109, 174
HpyF10VI GCNNNNNNNGC 2 cut(s) 115, 213
HpyF3I CTNAG 1 cut(s) 27
Hsp92II CATG 1 cut(s) 122
LpnPI CCDG 5 cut(s) 218, 245, 275, 284, 344
Lsp1109I GCAGC 2 cut(s) 127, 200
LweI GCATC 1 cut(s) 324
MaeI CTAG 1 cut(s) 364
MboII GAAGA 1 cut(s) 149
MmeI TCCRAC 1 cut(s) 76
MseI TTAA 1 cut(s) 165
MslI CAYNNNNRTG 1 cut(s) 309
MspCI CTTAAG 1 cut(s) 164
MspR9I CCNGG 1 cut(s) 233
MvaI CCWGG 1 cut(s) 233
MwoI GCNNNNNNNGC 2 cut(s) 115, 213
NlaIII CATG 1 cut(s) 122
PfoI TCCNGGA 1 cut(s) 231
PkrI GCNGC 2 cut(s) 117, 215
Psp6I CCWGG 1 cut(s) 231
PspGI CCWGG 1 cut(s) 231
PspPI GGNCC 1 cut(s) 268
RseI CAYNNNNRTG 1 cut(s) 309
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 2 cut(s) 116, 214
Sau96I GGNCC 1 cut(s) 268
ScrFI CCNGG 1 cut(s) 233
SetI ASST 5 cut(s) 49, 73, 88, 215, 270
SfaNI GCATC 1 cut(s) 324
SinI GGWCC 1 cut(s) 268
SmiMI CAYNNNNRTG 1 cut(s) 309
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
SsiI CCGC 1 cut(s) 58
SspMI CTAG 1 cut(s) 364
StyD4I CCNGG 1 cut(s) 231
TaaI ACNGT 1 cut(s) 308
TaqI TCGA 1 cut(s) 351
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 2 cut(s) 116, 311
TseI GCWGC 2 cut(s) 115, 213
TspRI CASTG 2 cut(s) 116, 311
Vha464I CTTAAG 1 cut(s) 164
VpaK11BI GGWCC 1 cut(s) 268
XspI CTAG 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.