pycom02g02430

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Reverse (-)
1508395 .. 1510471
2077 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1353 bp
ATGTCTCTCATGGAACCCCCGAGGAAGAAGAAGCACTGCATTCAACAAGTGTTCGTACTTGTCGGATTTCCTCTTTGTGTGGTCCTAAGATTGAATCTTTGTCGCATGTTGAACATGGGAAGCTTCTGGTTCTTTGTTCAGTTTGGTCACTTGTTCTTGGTCTTGTTCCTTCTAATTGACTCTGTTGCGGTGCAAGCGTTCACTGGAACGTATGGAATAAATTATGGAAGAGTTGGAGATAACCTTCTTTCTCCTAAGAACGTTGTTGCTCTTATCAAAGCAGCAAAGATAAAGAATGTCAGGATATACGATACTGATCGCGATGTTCTCAATGCTTTCAGAGGGACTGGACTTGAAGTAGTGGTAACACTTCCAAATGCAATGCTGCCAGACATGAGTCTCAATGAGGACGATGCAGTGAATTGGGTTAAAGACAATGTGCAGTCATTCCTTCCCGAGACACAAATACGTGGGATTGCCGTGGGTAATGAAGTATTAGGTGTGGCGGAGTTTGAATTGTGGGGAGCTCTTTTGGGTGCAGCTAAAAACATCTACAAGGCAGTAAAGAGGCTGAAATTAACCGACATTCAGATTTATACTCCGCACGCGGAGGCCGTTTTTACTAATTCCTACCCTCCCTCTTCGTGCACATTTAATCACAATGTTAAGAAGTACATGAAGCCGCTTTTGGAGTTCTTCTCAGAAATCGGGTCTCCCTTCTGTTTAAATGCTTACCCGTTCCTCGTCTATATGGCTAATCCGAAGAATGTTGATCTTAACTATGCTCTTTTCCTGGATTCTAAGGGAAGTTACGATACAAATACTAACCTTCATTATGATAACCTTCTTGAAGCGCAGATTGACGCAGCTTATGCAGCATTGGAGGATGCCGGGTTTAAGAATATGGAAATTATTGTTACAGAGACAGGGTGGGCTTCAAAGGGAGATGCTAATGAAACTGCAGCTACAGCAAACAACGCGAAGATATATAATTATAATTTGCGCAAACGGCTGGCAATGGGAAAAGGGACCCCTCTCCGGCCAAAAATTGTAGTGAAGGCGTACGTTTTTGCCTTGTTGAACGAGAACTTGAAAACGGGGCCAACTTCTGAGAGAAATTATGGACTGTTCAAGGCTAATGGGAACATTGCATATGATATTGGGTTTCACGGAACTTCCTCATCCGGAGATGATGACTCCGTAAGTGATTCTCTCTTCCTAGAGGATGAACACACAGTTTCATCGTCTGCAAATTCGTTGCTTTTTTCTTCAAAGGATATTGGAGCTCAAGATTGGTTTCGTTTGCGATACTTTTTGTTCCAGATCTCCGCTGCTGCATTGCTTCTGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_17

Protein Analysis

451

Amino Acids

50.06

Weight (kDa)

6.41

Isoelectric Point (pI)

30.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 72 - 389 7.1e-75 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 996
Acc16I TGCGCA 1 cut(s) 1004
AccII CGCG 3 cut(s) 321, 608, 980
AccIII TCCGGA 1 cut(s) 1184
AciI CCGC 6 cut(s) 188, 506, 602, 608, 683, 1329
AclI AACGTT 1 cut(s) 261
AcoI YGGCCR 1 cut(s) 1040
AcsI RAATTY 1 cut(s) 1252
AfaI GTAC 3 cut(s) 57, 674, 1064
AfiI CCNNNNNNNGG 1 cut(s) 1038
AjnI CCWGG 1 cut(s) 792
AjuI GAANNNNNNNTTGG 2 cut(s) 671, 703
AluBI AGCT 6 cut(s) 123, 527, 542, 869, 965, 1286
AluI AGCT 6 cut(s) 123, 527, 542, 869, 965, 1286
Alw21I GWGCWC 3 cut(s) 529, 650, 1288
Alw26I GTCTC 5 cut(s) 9, 404, 452, 717, 917
Alw44I GTGCAC 1 cut(s) 646
Ama87I CYCGRG 2 cut(s) 19, 455
Aor13HI TCCGGA 1 cut(s) 1184
AoxI GGCC 3 cut(s) 612, 1040, 1100
ApaLI GTGCAC 1 cut(s) 646
ApeKI GCWGC 8 cut(s) 281, 385, 539, 866, 875, 962, 1331, 1334
ApoI RAATTY 1 cut(s) 1252
AspLEI GCGC 2 cut(s) 856, 1005
AspS9I GGNCC 3 cut(s) 82, 1029, 1100
AsuC2I CCSGG 1 cut(s) 892
AvaI CYCGRG 2 cut(s) 19, 455
AvaII GGWCC 2 cut(s) 82, 1029
BaeGI GKGCMC 1 cut(s) 650
BanII GRGCYC 2 cut(s) 529, 1288
BarI GAAGNNNNNNTAC 2 cut(s) 799, 831
Bbv12I GWGCWC 3 cut(s) 529, 650, 1288
BbvI GCAGC 8 cut(s) 293, 372, 551, 878, 887, 974, 1318, 1321
BceAI ACGGC 3 cut(s) 464, 599, 1025
BciT130I CCWGG 1 cut(s) 794
BcnI CCSGG 1 cut(s) 892
BcoDI GTCTC 5 cut(s) 9, 404, 452, 717, 917
BfaI CTAG 1 cut(s) 1220
BfmI CTRYAG 2 cut(s) 960, 966
BglII AGATCT 1 cut(s) 1323
BisI GCNGC 9 cut(s) 282, 386, 540, 683, 867, 876, 963, 1332, 1335
BlsI GCNGC 9 cut(s) 283, 387, 541, 684, 868, 877, 964, 1333, 1336
Bme1390I CCNGG 2 cut(s) 794, 892
Bme18I GGWCC 2 cut(s) 82, 1029
BmeT110I CYCGRG 2 cut(s) 19, 455
BmgT120I GGNCC 3 cut(s) 82, 1029, 1100
BmiI GGNNCC 4 cut(s) 15, 1030, 1031, 1101
BmrFI CCNGG 2 cut(s) 794, 892
BmsI GCATC 3 cut(s) 403, 877, 937
BoxI GACNNNNGTC 1 cut(s) 396
BplI GAGNNNNNCTC 2 cut(s) 683, 715
BpuEI CTTGAG 1 cut(s) 1272
BpuMI CCSGG 1 cut(s) 892
BsaAI YACGTR 1 cut(s) 470
BsaBI GATNNNNATC 1 cut(s) 315
BsaI GGTCTC 1 cut(s) 717
BsaJI CCNNGG 2 cut(s) 20, 480
BsaWI WCCGGW 1 cut(s) 1184
Bsc4I CCNNNNNNNGG 1 cut(s) 1038
Bse1I ACTGG 2 cut(s) 208, 352
Bse3DI GCAATG 4 cut(s) 387, 1023, 1146, 1337
Bse8I GATNNNNATC 1 cut(s) 315
BseAI TCCGGA 1 cut(s) 1184
BseBI CCWGG 1 cut(s) 794
BseDI CCNNGG 2 cut(s) 20, 480
BseGI GGATG 3 cut(s) 892, 1181, 1231
BseJI GATNNNNATC 1 cut(s) 315
BseLI CCNNNNNNNGG 1 cut(s) 1038
BseMI GCAATG 4 cut(s) 387, 1023, 1146, 1337
BseMII CTCAG 2 cut(s) 714, 1101
BseNI ACTGG 2 cut(s) 208, 352
BseSI GKGCMC 1 cut(s) 650
BseXI GCAGC 8 cut(s) 293, 372, 551, 878, 887, 974, 1318, 1321
BsgI GTGCAG 2 cut(s) 461, 558
Bsh1236I CGCG 3 cut(s) 321, 608, 980
BshFI GGCC 3 cut(s) 614, 1042, 1102
BsiHKAI GWGCWC 3 cut(s) 529, 650, 1288
BsiHKCI CYCGRG 2 cut(s) 19, 455
BsiSI CCGG 3 cut(s) 891, 1039, 1185
BsiWI CGTACG 1 cut(s) 1062
BslFI GGGAC 2 cut(s) 358, 1042
BslI CCNNNNNNNGG 1 cut(s) 1038
BsmAI GTCTC 5 cut(s) 9, 404, 452, 717, 917
BsmFI GGGAC 2 cut(s) 358, 1042
BsmI GAATGC 1 cut(s) 39
BsnI GGCC 3 cut(s) 614, 1042, 1102
Bso31I GGTCTC 1 cut(s) 717
BsoBI CYCGRG 2 cut(s) 19, 455
Bsp1286I GDGCHC 3 cut(s) 529, 650, 1288
Bsp13I TCCGGA 1 cut(s) 1184
Bsp143I GATC 3 cut(s) 316, 772, 1323
Bsp68I TCGCGA 1 cut(s) 321
BspACI CCGC 6 cut(s) 188, 506, 602, 608, 683, 1329
BspANI GGCC 3 cut(s) 614, 1042, 1102
BspCNI CTCAG 2 cut(s) 713, 1102
BspEI TCCGGA 1 cut(s) 1184
BspFNI CGCG 3 cut(s) 321, 608, 980
BspLI GGNNCC 4 cut(s) 15, 1030, 1031, 1101
BspMAI CTGCAG 1 cut(s) 964
BspTNI GGTCTC 1 cut(s) 717
BsrDI GCAATG 4 cut(s) 387, 1023, 1146, 1337
BsrI ACTGG 2 cut(s) 208, 352
BssECI CCNNGG 2 cut(s) 20, 480
BssMI GATC 3 cut(s) 316, 772, 1323
Bst2UI CCWGG 1 cut(s) 794
Bst4CI ACNGT 2 cut(s) 1128, 1237
Bst6I CTCTTC 3 cut(s) 223, 646, 1220
BstAPI GCANNNNNTGC 1 cut(s) 872
BstBAI YACGTR 1 cut(s) 470
BstC8I GCNNGC 3 cut(s) 195, 606, 1014
BstDEI CTNAG 5 cut(s) 86, 255, 700, 801, 1110
BstDSI CCRYGG 1 cut(s) 480
BstF5I GGATG 3 cut(s) 892, 1181, 1231
BstFNI CGCG 3 cut(s) 321, 608, 980
BstHHI GCGC 2 cut(s) 856, 1005
BstKTI GATC 3 cut(s) 319, 775, 1326
BstMAI GTCTC 5 cut(s) 9, 404, 452, 717, 917
BstMBI GATC 3 cut(s) 316, 772, 1323
BstMWI GCNNNNNNNGC 6 cut(s) 194, 872, 875, 968, 977, 1009
BstNI CCWGG 1 cut(s) 794
BstNSI RCATGY 1 cut(s) 109
BstPAI GACNNNNGTC 1 cut(s) 396
BstSCI CCNGG 2 cut(s) 792, 890
BstSFI CTRYAG 2 cut(s) 960, 966
BstSLI GKGCMC 1 cut(s) 650
BstUI CGCG 3 cut(s) 321, 608, 980
BstV1I GCAGC 8 cut(s) 293, 372, 551, 878, 887, 974, 1318, 1321
BstX2I RGATCY 1 cut(s) 1323
BstYI RGATCY 1 cut(s) 1323
BsuRI GGCC 3 cut(s) 614, 1042, 1102
BtgI CCRYGG 1 cut(s) 480
BtgZI GCGATG 1 cut(s) 336
BtsCI GGATG 3 cut(s) 892, 1181, 1231
BtsI GCAGTG 2 cut(s) 34, 423
BtsIMutI CAGTG 3 cut(s) 34, 201, 423
BtuMI TCGCGA 1 cut(s) 321
Cac8I GCNNGC 3 cut(s) 195, 606, 1014
CfoI GCGC 2 cut(s) 856, 1005
Cfr13I GGNCC 3 cut(s) 82, 1029, 1100
CseI GACGC 1 cut(s) 872
Csp6I GTAC 3 cut(s) 56, 673, 1063
CviAII CATG 5 cut(s) 10, 106, 115, 394, 676
CviQI GTAC 3 cut(s) 56, 673, 1063
DdeI CTNAG 5 cut(s) 86, 255, 700, 801, 1110
DpnI GATC 3 cut(s) 318, 774, 1325
DpnII GATC 3 cut(s) 316, 772, 1323
DraI TTTAAA 1 cut(s) 726
EaeI YGGCCR 1 cut(s) 1040
Eam1104I CTCTTC 3 cut(s) 223, 646, 1220
EarI CTCTTC 3 cut(s) 223, 646, 1220
EciI GGCGGA 1 cut(s) 521
Ecl136II GAGCTC 2 cut(s) 527, 1286
Eco24I GRGCYC 2 cut(s) 529, 1288
Eco31I GGTCTC 1 cut(s) 717
Eco47I GGWCC 2 cut(s) 82, 1029
Eco53kI GAGCTC 2 cut(s) 527, 1286
Eco88I CYCGRG 2 cut(s) 19, 455
EcoICRI GAGCTC 2 cut(s) 527, 1286
EcoO109I RGGNCCY 1 cut(s) 1029
EcoRII CCWGG 1 cut(s) 792
EcoT38I GRGCYC 2 cut(s) 529, 1288
FaeI CATG 5 cut(s) 13, 109, 118, 397, 679
FaqI GGGAC 2 cut(s) 358, 1042
FatI CATG 5 cut(s) 9, 105, 114, 393, 675
FauNDI CATATG 1 cut(s) 1153
Fnu4HI GCNGC 9 cut(s) 282, 386, 540, 683, 867, 876, 963, 1332, 1335
FokI GGATG 3 cut(s) 899, 1168, 1238
FriOI GRGCYC 2 cut(s) 529, 1288
Fsp4HI GCNGC 9 cut(s) 282, 386, 540, 683, 867, 876, 963, 1332, 1335
FspBI CTAG 1 cut(s) 1220
FspI TGCGCA 1 cut(s) 1004
GlaI GCGC 2 cut(s) 855, 1004
GluI GCNGC 9 cut(s) 282, 386, 540, 683, 867, 876, 963, 1332, 1335
HaeIII GGCC 3 cut(s) 614, 1042, 1102
HapII CCGG 3 cut(s) 891, 1039, 1185
HgaI GACGC 1 cut(s) 872
HhaI GCGC 2 cut(s) 856, 1005
Hin1II CATG 5 cut(s) 13, 109, 118, 397, 679
Hin6I GCGC 2 cut(s) 854, 1003
HinP1I GCGC 2 cut(s) 854, 1003
HindIII AAGCTT 1 cut(s) 121
HinfI GANTC 6 cut(s) 94, 179, 397, 797, 1196, 1208
HpaII CCGG 3 cut(s) 891, 1039, 1185
Hpy166II GTNNAC 2 cut(s) 201, 648
Hpy188I TCNGA 6 cut(s) 65, 341, 591, 703, 762, 1111
Hpy188III TCNNGA 7 cut(s) 301, 320, 455, 848, 1185, 1289, 1321
Hpy8I GTNNAC 2 cut(s) 201, 648
HpyAV CCTTC 7 cut(s) 179, 254, 461, 727, 839, 854, 1051
HpyCH4III ACNGT 2 cut(s) 1128, 1237
HpyCH4IV ACGT 4 cut(s) 209, 261, 469, 1065
HpyF10VI GCNNNNNNNGC 6 cut(s) 194, 872, 875, 968, 977, 1009
HpyF3I CTNAG 5 cut(s) 86, 255, 700, 801, 1110
HpySE526I ACGT 4 cut(s) 209, 261, 469, 1065
Hsp92II CATG 5 cut(s) 13, 109, 118, 397, 679
HspAI GCGC 2 cut(s) 854, 1003
KflI GGGWCCC 1 cut(s) 1029
Kpn2I TCCGGA 1 cut(s) 1184
Kzo9I GATC 3 cut(s) 316, 772, 1323
LmnI GCTCC 2 cut(s) 524, 1283
Lsp1109I GCAGC 8 cut(s) 293, 372, 551, 878, 887, 974, 1318, 1321
LweI GCATC 3 cut(s) 403, 877, 937
MaeI CTAG 1 cut(s) 1220
MaeII ACGT 4 cut(s) 209, 261, 469, 1065
MaeIII GTNAC 4 cut(s) 146, 364, 809, 916
MalI GATC 3 cut(s) 318, 774, 1325
MboI GATC 3 cut(s) 316, 772, 1323
MboII GAAGA 9 cut(s) 37, 40, 240, 633, 688, 775, 994, 1207, 1260
MflI RGATCY 1 cut(s) 1323
MhlI GDGCHC 3 cut(s) 529, 650, 1288
MlyI GAGTC 3 cut(s) 173, 406, 1190
MmeI TCCRAC 2 cut(s) 43, 214
MroI TCCGGA 1 cut(s) 1184
MseI TTAA 8 cut(s) 429, 578, 654, 666, 725, 777, 897, 1351
MspA1I CMGCKG 1 cut(s) 1331
MspI CCGG 3 cut(s) 891, 1039, 1185
MspR9I CCNGG 2 cut(s) 794, 892
Mva1269I GAATGC 1 cut(s) 39
MvaI CCWGG 1 cut(s) 794
MvnI CGCG 3 cut(s) 321, 608, 980
MwoI GCNNNNNNNGC 6 cut(s) 194, 872, 875, 968, 977, 1009
NciI CCSGG 1 cut(s) 892
NdeI CATATG 1 cut(s) 1153
NdeII GATC 3 cut(s) 316, 772, 1323
NlaIII CATG 5 cut(s) 13, 109, 118, 397, 679
NlaIV GGNNCC 4 cut(s) 15, 1030, 1031, 1101
NmuCI GTSAC 1 cut(s) 146
NruI TCGCGA 1 cut(s) 321
NsbI TGCGCA 1 cut(s) 1004
NspI RCATGY 1 cut(s) 109
PcsI WCGNNNNNNNCGW 1 cut(s) 612
PctI GAATGC 1 cut(s) 39
PfeI GAWTC 3 cut(s) 94, 797, 1208
Pfl23II CGTACG 1 cut(s) 1062
PfoI TCCNGGA 1 cut(s) 792
PkrI GCNGC 9 cut(s) 283, 387, 541, 684, 868, 877, 964, 1333, 1336
PleI GAGTC 3 cut(s) 173, 405, 1190
PpsI GAGTC 3 cut(s) 173, 405, 1190
Ppu21I YACGTR 1 cut(s) 470
PpuMI RGGWCCY 1 cut(s) 1029
PshAI GACNNNNGTC 1 cut(s) 396
PsiI TTATAA 1 cut(s) 996
Psp124BI GAGCTC 2 cut(s) 529, 1288
Psp1406I AACGTT 1 cut(s) 261
Psp5II RGGWCCY 1 cut(s) 1029
Psp6I CCWGG 1 cut(s) 792
PspGI CCWGG 1 cut(s) 792
PspLI CGTACG 1 cut(s) 1062
PspN4I GGNNCC 4 cut(s) 15, 1030, 1031, 1101
PspPI GGNCC 3 cut(s) 82, 1029, 1100
PspPPI RGGWCCY 1 cut(s) 1029
PstI CTGCAG 1 cut(s) 964
PsuI RGATCY 1 cut(s) 1323
RruI TCGCGA 1 cut(s) 321
RsaI GTAC 3 cut(s) 57, 674, 1064
RsaNI GTAC 3 cut(s) 56, 673, 1063
SacI GAGCTC 2 cut(s) 529, 1288
SaqAI TTAA 8 cut(s) 429, 578, 654, 666, 725, 777, 897, 1351
SatI GCNGC 9 cut(s) 282, 386, 540, 683, 867, 876, 963, 1332, 1335
Sau3AI GATC 3 cut(s) 316, 772, 1323
Sau96I GGNCC 3 cut(s) 82, 1029, 1100
SchI GAGTC 3 cut(s) 173, 406, 1190
ScrFI CCNGG 2 cut(s) 794, 892
SduI GDGCHC 3 cut(s) 529, 650, 1288
SfaNI GCATC 3 cut(s) 403, 877, 937
SfcI CTRYAG 2 cut(s) 960, 966
SinI GGWCC 2 cut(s) 82, 1029
SmlI CTYRAG 1 cut(s) 1287
SmoI CTYRAG 1 cut(s) 1287
SsiI CCGC 6 cut(s) 188, 506, 602, 608, 683, 1329
SspMI CTAG 1 cut(s) 1220
SstI GAGCTC 2 cut(s) 529, 1288
StyD4I CCNGG 2 cut(s) 792, 890
TaaI ACNGT 2 cut(s) 1128, 1237
TaiI ACGT 4 cut(s) 212, 264, 472, 1068
TatI WGTACW 1 cut(s) 672
TauI GCSGC 1 cut(s) 685
TfiI GAWTC 3 cut(s) 94, 797, 1208
Tru1I TTAA 8 cut(s) 429, 578, 654, 666, 725, 777, 897, 1351
Tru9I TTAA 8 cut(s) 429, 578, 654, 666, 725, 777, 897, 1351
TscAI CASTG 3 cut(s) 41, 208, 423
TseFI GTSAC 1 cut(s) 146
TseI GCWGC 8 cut(s) 281, 385, 539, 866, 875, 962, 1331, 1334
Tsp45I GTSAC 1 cut(s) 146
TspDTI ATGAA 6 cut(s) 504, 692, 821, 969, 1230, 1242
TspGWI ACGGA 2 cut(s) 1185, 1189
TspRI CASTG 3 cut(s) 41, 208, 423
VneI GTGCAC 1 cut(s) 646
VpaK11BI GGWCC 2 cut(s) 82, 1029
XapI RAATTY 1 cut(s) 1252
XceI RCATGY 1 cut(s) 109
XspI CTAG 1 cut(s) 1220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.