Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1613746 .. 1614234

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGCAACTCGTCACTCGTGACCCCCCAAAACCCTCCCTCTCGCTCCACTCTCACCGATTCCAGTGCAATCGCCAACTAACCCACAAACCCAACTCGCTCCCTCACTCGCACCGGTTCGGTGTGAACTCGGCGGCTGCCATGCTCAAAGGCAAGCTCAAGCTCCCCGAAAAGACCAAGCGAGTTTTCCCGGACCGACTGGGCAGCCTGGTCGCGGGATTCGAAAACAAAGCGGAAGAAAATGGTGGGTCCGATCTGGTGTTCGATACCGGCGAGGAGCTCGAGATTATTCTGCCAAACGGGTACGGGTCGGGCAGAGAGAGTCAGATTGATGAAGAGGACGAGGATTTTGATGATGAGAAGTTGAACAAAGAACCGGATTTGAGGGTCCAGCAGAGACCCGAAAGAGAAGGGTCGGGTTCGTTGTCGGTGCTGGCGGCCATTGCGGCGGATGATAAAAGGTCTGATCTTGAGTATGAGGTGAGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

163

Amino Acids

18.14

Weight (kDa)

5.29

Isoelectric Point (pI)

37.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	212
AciI	CCGC	6 cut(s)	131, 212, 230, 434, 443, 446
AcoI	YGGCCR	1 cut(s)	435
AcsI	RAATTY	1 cut(s)	483
AfaI	GTAC	1 cut(s)	302
AfiI	CCNNNNNNNGG	1 cut(s)	211
AgeI	ACCGGT	1 cut(s)	111
AgsI	TTSAA	1 cut(s)	364
AjnI	CCWGG	1 cut(s)	204
AjuI	GAANNNNNNNTTGG	2 cut(s)	167, 199
AluBI	AGCT	3 cut(s)	154, 160, 277
AluI	AGCT	3 cut(s)	154, 160, 277
Alw21I	GWGCWC	1 cut(s)	279
Alw26I	GTCTC	1 cut(s)	388
Ama87I	CYCGRG	1 cut(s)	278
AoxI	GGCC	1 cut(s)	435
ApeKI	GCWGC	2 cut(s)	134, 201
ApoI	RAATTY	1 cut(s)	483
ArsI	GACNNNNNNTTYG	2 cut(s)	329, 361
AsiGI	ACCGGT	1 cut(s)	111
AspS9I	GGNCC	3 cut(s)	190, 246, 385
AsuC2I	CCSGG	1 cut(s)	188
AsuHPI	GGTGA	1 cut(s)	44
AsuII	TTCGAA	1 cut(s)	219
AvaI	CYCGRG	1 cut(s)	278
AvaII	GGWCC	3 cut(s)	190, 246, 385
BanII	GRGCYC	1 cut(s)	279
BauI	CACGAG	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	279
BbvI	GCAGC	2 cut(s)	121, 213
BcgI	CGANNNNNNTGC	4 cut(s)	45, 79, 190, 224
BciT130I	CCWGG	1 cut(s)	206
BcnI	CCSGG	1 cut(s)	188
BcoDI	GTCTC	1 cut(s)	388
BglI	GCCNNNNNGGC	1 cut(s)	443
BisI	GCNGC	5 cut(s)	132, 135, 202, 435, 444
BlsI	GCNGC	5 cut(s)	133, 136, 203, 436, 445
Bme1390I	CCNGG	2 cut(s)	188, 206
Bme18I	GGWCC	3 cut(s)	190, 246, 385
BmeT110I	CYCGRG	1 cut(s)	278
BmgT120I	GGNCC	3 cut(s)	190, 246, 385
BmiI	GGNNCC	2 cut(s)	247, 386
BmrFI	CCNGG	2 cut(s)	188, 206
BmrI	ACTGGG	1 cut(s)	206
BmuI	ACTGGG	1 cut(s)	206
Bpu14I	TTCGAA	1 cut(s)	219
BpuEI	CTTGAG	2 cut(s)	140, 488
BpuMI	CCSGG	1 cut(s)	188
BsaI	GGTCTC	1 cut(s)	388
BsaWI	WCCGGW	2 cut(s)	111, 373
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse118I	RCCGGY	2 cut(s)	111, 266
Bse1I	ACTGG	2 cut(s)	61, 201
Bse3DI	GCAATG	1 cut(s)	438
BseBI	CCWGG	1 cut(s)	206
BseGI	GGATG	1 cut(s)	454
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMI	GCAATG	1 cut(s)	438
BseNI	ACTGG	2 cut(s)	61, 201
BseRI	GAGGAG	1 cut(s)	287
BseXI	GCAGC	2 cut(s)	121, 213
Bsh1236I	CGCG	1 cut(s)	212
BshFI	GGCC	1 cut(s)	437
BshTI	ACCGGT	1 cut(s)	111
BsiHKAI	GWGCWC	1 cut(s)	279
BsiHKCI	CYCGRG	1 cut(s)	278
BsiSI	CCGG	4 cut(s)	112, 188, 267, 374
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmAI	GTCTC	1 cut(s)	388
BsnI	GGCC	1 cut(s)	437
Bso31I	GGTCTC	1 cut(s)	388
BsoBI	CYCGRG	1 cut(s)	278
Bsp119I	TTCGAA	1 cut(s)	219
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	2 cut(s)	250, 463
BspACI	CCGC	6 cut(s)	131, 212, 230, 434, 443, 446
BspANI	GGCC	1 cut(s)	437
BspFNI	CGCG	1 cut(s)	212
BspLI	GGNNCC	2 cut(s)	247, 386
BspT104I	TTCGAA	1 cut(s)	219
BspTNI	GGTCTC	1 cut(s)	388
BsrDI	GCAATG	1 cut(s)	438
BsrFI	RCCGGY	2 cut(s)	111, 266
BsrI	ACTGG	2 cut(s)	61, 201
BssAI	RCCGGY	2 cut(s)	111, 266
BssMI	GATC	2 cut(s)	250, 463
BssSI	CACGAG	1 cut(s)	15
Bst2BI	CACGAG	1 cut(s)	15
Bst2UI	CCWGG	1 cut(s)	206
Bst6I	CTCTTC	1 cut(s)	327
BstBI	TTCGAA	1 cut(s)	219
BstC8I	GCNNGC	2 cut(s)	152, 432
BstF5I	GGATG	1 cut(s)	454
BstFNI	CGCG	1 cut(s)	212
BstKTI	GATC	2 cut(s)	253, 466
BstMAI	GTCTC	1 cut(s)	388
BstMBI	GATC	2 cut(s)	250, 463
BstMWI	GCNNNNNNNGC	2 cut(s)	440, 443
BstNI	CCWGG	1 cut(s)	206
BstSCI	CCNGG	2 cut(s)	186, 204
BstUI	CGCG	1 cut(s)	212
BstV1I	GCAGC	2 cut(s)	121, 213
BsuRI	GGCC	1 cut(s)	437
BtsCI	GGATG	1 cut(s)	454
BtsIMutI	CAGTG	1 cut(s)	68
Cac8I	GCNNGC	2 cut(s)	152, 432
Cfr10I	RCCGGY	2 cut(s)	111, 266
Cfr13I	GGNCC	3 cut(s)	190, 246, 385
CpoI	CGGWCCG	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	301
CspAI	ACCGGT	1 cut(s)	111
CspI	CGGWCCG	1 cut(s)	190
CviAII	CATG	1 cut(s)	139
CviJI	RGCY	6 cut(s)	134, 154, 160, 204, 277, 437
CviKI_1	RGCY	6 cut(s)	134, 154, 160, 204, 277, 437
CviQI	GTAC	1 cut(s)	301
DpnI	GATC	2 cut(s)	252, 465
DpnII	GATC	2 cut(s)	250, 463
EaeI	YGGCCR	1 cut(s)	435
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
EciI	GGCGGA	1 cut(s)	461
Ecl136II	GAGCTC	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	279
Eco31I	GGTCTC	1 cut(s)	388
Eco47I	GGWCC	3 cut(s)	190, 246, 385
Eco53kI	GAGCTC	1 cut(s)	277
Eco88I	CYCGRG	1 cut(s)	278
EcoICRI	GAGCTC	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	204
EcoT38I	GRGCYC	1 cut(s)	279
FaeI	CATG	1 cut(s)	142
FaiI	YATR	2 cut(s)	140, 474
FatI	CATG	1 cut(s)	138
FauI	CCCGC	1 cut(s)	205
Fnu4HI	GCNGC	5 cut(s)	132, 135, 202, 435, 444
FokI	GGATG	1 cut(s)	461
FriOI	GRGCYC	1 cut(s)	279
Fsp4HI	GCNGC	5 cut(s)	132, 135, 202, 435, 444
GluI	GCNGC	5 cut(s)	132, 135, 202, 435, 444
HaeIII	GGCC	1 cut(s)	437
HapII	CCGG	4 cut(s)	112, 188, 267, 374
Hin1II	CATG	1 cut(s)	142
HinfI	GANTC	3 cut(s)	57, 216, 319
HpaII	CCGG	4 cut(s)	112, 188, 267, 374
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	3 cut(s)	250, 324, 463
Hpy188III	TCNNGA	3 cut(s)	17, 280, 467
Hpy8I	GTNNAC	1 cut(s)	124
HpyAV	CCTTC	1 cut(s)	401
HpyCH4V	TGCA	2 cut(s)	4, 66
HpyF10VI	GCNNNNNNNGC	2 cut(s)	440, 443
Hsp92II	CATG	1 cut(s)	142
Kzo9I	GATC	2 cut(s)	250, 463
LmnI	GCTCC	4 cut(s)	48, 102, 165, 274
Lsp1109I	GCAGC	2 cut(s)	121, 213
MaeIII	GTNAC	2 cut(s)	10, 17
MalI	GATC	2 cut(s)	252, 465
MboI	GATC	2 cut(s)	250, 463
MboII	GAAGA	2 cut(s)	245, 344
MhlI	GDGCHC	1 cut(s)	279
MluCI	AATT	1 cut(s)	483
MlyI	GAGTC	1 cut(s)	328
MnlI	CCTC	8 cut(s)	43, 47, 111, 265, 328, 334, 375, 469
MspI	CCGG	4 cut(s)	112, 188, 267, 374
MspR9I	CCNGG	2 cut(s)	188, 206
MvaI	CCWGG	1 cut(s)	206
MvnI	CGCG	1 cut(s)	212
MwoI	GCNNNNNNNGC	2 cut(s)	440, 443
NciI	CCSGG	1 cut(s)	188
NdeII	GATC	2 cut(s)	250, 463
NlaIII	CATG	1 cut(s)	142
NlaIV	GGNNCC	2 cut(s)	247, 386
NmeAIII	GCCGAG	1 cut(s)	107
NmuCI	GTSAC	2 cut(s)	10, 17
NspV	TTCGAA	1 cut(s)	219
PaeR7I	CTCGAG	1 cut(s)	278
PcsI	WCGNNNNNNNCGW	2 cut(s)	216, 267
PfeI	GAWTC	2 cut(s)	57, 216
PfoI	TCCNGGA	1 cut(s)	186
PinAI	ACCGGT	1 cut(s)	111
PkrI	GCNGC	5 cut(s)	133, 136, 203, 436, 445
PleI	GAGTC	1 cut(s)	327
PpsI	GAGTC	1 cut(s)	327
Psp124BI	GAGCTC	1 cut(s)	279
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	2 cut(s)	247, 386
PspPI	GGNCC	3 cut(s)	190, 246, 385
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
Rsr2I	CGGWCCG	1 cut(s)	190
RsrII	CGGWCCG	1 cut(s)	190
SacI	GAGCTC	1 cut(s)	279
SatI	GCNGC	5 cut(s)	132, 135, 202, 435, 444
Sau3AI	GATC	2 cut(s)	250, 463
Sau96I	GGNCC	3 cut(s)	190, 246, 385
SchI	GAGTC	1 cut(s)	328
ScrFI	CCNGG	2 cut(s)	188, 206
SduI	GDGCHC	1 cut(s)	279
SetI	ASST	5 cut(s)	156, 162, 279, 461, 480
Sfr274I	CTCGAG	1 cut(s)	278
SfuI	TTCGAA	1 cut(s)	219
SinI	GGWCC	3 cut(s)	190, 246, 385
SlaI	CTCGAG	1 cut(s)	278
SmlI	CTYRAG	3 cut(s)	155, 278, 467
SmoI	CTYRAG	3 cut(s)	155, 278, 467
Sse9I	AATT	1 cut(s)	483
SsiI	CCGC	6 cut(s)	131, 212, 230, 434, 443, 446
SstI	GAGCTC	1 cut(s)	279
StyD4I	CCNGG	2 cut(s)	186, 204
TaqI	TCGA	3 cut(s)	219, 261, 279
TaqII	GACCGA	1 cut(s)	207
TasI	AATT	1 cut(s)	483
TauI	GCSGC	3 cut(s)	134, 437, 446
TfiI	GAWTC	2 cut(s)	57, 216
TscAI	CASTG	1 cut(s)	68
TseFI	GTSAC	2 cut(s)	10, 17
TseI	GCWGC	2 cut(s)	134, 201
Tsp45I	GTSAC	2 cut(s)	10, 17
TspDTI	ATGAA	1 cut(s)	345
TspRI	CASTG	1 cut(s)	68
VpaK11BI	GGWCC	3 cut(s)	190, 246, 385
XapI	RAATTY	1 cut(s)	483
XhoI	CTCGAG	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.