Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1619920 .. 1620610

Gene Structure 691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g02590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGAGAGCACTGCAGTCTGCAATACGTACATATATTGTAAGCTTAGTCCGCCGACAGTGTTGCATACAGTCCCTCCTTCTCTCTCTTTTTATATCCACCTATCTATCACCGCATGTAGCCTCAAATTTCCATCTGTTACCTTCTCTGAACTCTCAATCGTCCCTTCATTCTTCTCTGTCTCTCTCAAAGTTAGACAAACAAATAAACAAAATGGTGAAATCAAAAAAGTACAGAGGCGTCAGGCAGCGTCACTGGGGCTCTTGGGTCTCAGAAATCCGCCACCCCCTACTGAAGAGAAGAGTCTGGCTAGGCACATTTGAGACAGCTGAAGAAGCAGCCCGAGCATACGACGAAGCTTCCGTTTTGATGAGCGGACGAAATGCCAAGACCAATTTCCCAATAACAACTACTACAACTCAGAGTAATGGTACCCGTGCCCCAGTAGGATCGATCAGATCACCCAAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

157

Amino Acids

17.6

Weight (kDa)

10.99

Isoelectric Point (pI)

59.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	76 - 119	1.7e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	428
AccB1I	GGYRCC	1 cut(s)	428
AccBSI	CCGCTC	1 cut(s)	372
AciI	CCGC	4 cut(s)	49, 110, 277, 372
AclWI	GGATC	1 cut(s)	454
AcsI	RAATTY	1 cut(s)	124
AcuI	CTGAAG	2 cut(s)	311, 348
AcyI	GRCGYC	1 cut(s)	237
AfaI	GTAC	3 cut(s)	28, 230, 430
AjuI	GAANNNNNNNTTGG	2 cut(s)	377, 409
AluBI	AGCT	3 cut(s)	42, 326, 356
AluI	AGCT	3 cut(s)	42, 326, 356
Alw21I	GWGCWC	1 cut(s)	10
Alw26I	GTCTC	3 cut(s)	183, 271, 314
AlwI	GGATC	1 cut(s)	454
Ama87I	CYCGRG	1 cut(s)	339
ApeKI	GCWGC	2 cut(s)	244, 335
ApoI	RAATTY	1 cut(s)	124
Asp718I	GGTACC	1 cut(s)	428
AsuHPI	GGTGA	3 cut(s)	99, 226, 450
AvaI	CYCGRG	1 cut(s)	339
BaeGI	GKGCMC	1 cut(s)	439
BanI	GGYRCC	1 cut(s)	428
BanII	GRGCYC	1 cut(s)	260
Bbv12I	GWGCWC	1 cut(s)	10
BbvI	GCAGC	2 cut(s)	256, 347
BccI	CCATC	1 cut(s)	138
BcgI	CGANNNNNNTGC	2 cut(s)	42, 76
BcoDI	GTCTC	3 cut(s)	183, 271, 314
BfaI	CTAG	2 cut(s)	308, 469
BfmI	CTRYAG	1 cut(s)	11
BisI	GCNGC	2 cut(s)	245, 336
BlsI	GCNGC	2 cut(s)	246, 337
BmeT110I	CYCGRG	1 cut(s)	339
BmiI	GGNNCC	1 cut(s)	430
BmrI	ACTGGG	2 cut(s)	262, 434
BmuI	ACTGGG	2 cut(s)	262, 434
Bsa29I	ATCGAT	1 cut(s)	449
BsaAI	YACGTR	1 cut(s)	26
BsaHI	GRCGYC	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	271
BsaXI	ACNNNNNCTCC	2 cut(s)	57, 87
Bse1I	ACTGG	2 cut(s)	257, 440
BseCI	ATCGAT	1 cut(s)	449
BseMII	CTCAG	2 cut(s)	282, 431
BseNI	ACTGG	2 cut(s)	257, 440
BseSI	GKGCMC	1 cut(s)	439
BseXI	GCAGC	2 cut(s)	256, 347
BshNI	GGYRCC	1 cut(s)	428
BshVI	ATCGAT	1 cut(s)	449
BsiHKAI	GWGCWC	1 cut(s)	10
BsiHKCI	CYCGRG	1 cut(s)	339
BslFI	GGGAC	2 cut(s)	55, 145
BsmAI	GTCTC	3 cut(s)	183, 271, 314
BsmFI	GGGAC	2 cut(s)	55, 145
Bso31I	GGTCTC	1 cut(s)	271
BsoBI	CYCGRG	1 cut(s)	339
Bsp1286I	GDGCHC	3 cut(s)	10, 260, 439
Bsp143I	GATC	3 cut(s)	446, 450, 455
BspACI	CCGC	4 cut(s)	49, 110, 277, 372
BspCNI	CTCAG	2 cut(s)	281, 430
BspDI	ATCGAT	1 cut(s)	449
BspLI	GGNNCC	1 cut(s)	430
BspMAI	CTGCAG	1 cut(s)	15
BspPI	GGATC	1 cut(s)	454
BspT107I	GGYRCC	1 cut(s)	428
BspTNI	GGTCTC	1 cut(s)	271
BsrBI	CCGCTC	1 cut(s)	372
BsrI	ACTGG	2 cut(s)	257, 440
BssMI	GATC	3 cut(s)	446, 450, 455
BssNI	GRCGYC	1 cut(s)	237
Bst4CI	ACNGT	2 cut(s)	57, 69
Bst6I	CTCTTC	2 cut(s)	287, 292
BstACI	GRCGYC	1 cut(s)	237
BstBAI	YACGTR	1 cut(s)	26
BstDEI	CTNAG	3 cut(s)	43, 268, 417
BstKTI	GATC	3 cut(s)	449, 453, 458
BstMAI	GTCTC	3 cut(s)	183, 271, 314
BstMBI	GATC	3 cut(s)	446, 450, 455
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 332, 341
BstNSI	RCATGY	1 cut(s)	116
BstSFI	CTRYAG	1 cut(s)	11
BstSLI	GKGCMC	1 cut(s)	439
BstSNI	TACGTA	1 cut(s)	26
BstV1I	GCAGC	2 cut(s)	256, 347
Bsu15I	ATCGAT	1 cut(s)	449
BsuTUI	ATCGAT	1 cut(s)	449
BtsI	GCAGTG	1 cut(s)	8
BtsIMutI	CAGTG	3 cut(s)	8, 62, 250
ClaI	ATCGAT	1 cut(s)	449
CseI	GACGC	2 cut(s)	226, 236
Csp6I	GTAC	3 cut(s)	27, 229, 429
CviAII	CATG	1 cut(s)	113
CviJI	RGCY	7 cut(s)	42, 119, 258, 307, 326, 338, 356
CviKI_1	RGCY	7 cut(s)	42, 119, 258, 307, 326, 338, 356
CviQI	GTAC	3 cut(s)	27, 229, 429
DdeI	CTNAG	3 cut(s)	43, 268, 417
DpnI	GATC	3 cut(s)	448, 452, 457
DpnII	GATC	3 cut(s)	446, 450, 455
Eam1104I	CTCTTC	2 cut(s)	287, 292
EarI	CTCTTC	2 cut(s)	287, 292
EciI	GGCGGA	2 cut(s)	38, 266
Eco105I	TACGTA	1 cut(s)	26
Eco24I	GRGCYC	1 cut(s)	260
Eco31I	GGTCTC	1 cut(s)	271
Eco57I	CTGAAG	2 cut(s)	311, 348
Eco88I	CYCGRG	1 cut(s)	339
EcoT38I	GRGCYC	1 cut(s)	260
FaeI	CATG	1 cut(s)	116
FaiI	YATR	6 cut(s)	31, 33, 65, 92, 114, 346
FaqI	GGGAC	2 cut(s)	55, 145
FatI	CATG	1 cut(s)	112
Fnu4HI	GCNGC	2 cut(s)	245, 336
FriOI	GRGCYC	1 cut(s)	260
Fsp4HI	GCNGC	2 cut(s)	245, 336
FspBI	CTAG	2 cut(s)	308, 469
GluI	GCNGC	2 cut(s)	245, 336
HgaI	GACGC	2 cut(s)	226, 236
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	1 cut(s)	116
HindIII	AAGCTT	2 cut(s)	40, 354
HinfI	GANTC	1 cut(s)	300
HphI	GGTGA	3 cut(s)	99, 226, 450
Hpy188I	TCNGA	4 cut(s)	147, 271, 420, 455
Hpy99I	CGWCG	1 cut(s)	353
HpyAV	CCTTC	3 cut(s)	86, 150, 173
HpyCH4III	ACNGT	2 cut(s)	57, 69
HpyCH4IV	ACGT	1 cut(s)	25
HpyCH4V	TGCA	3 cut(s)	13, 20, 63
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 332, 341
HpyF3I	CTNAG	3 cut(s)	43, 268, 417
HpySE526I	ACGT	1 cut(s)	25
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	1 cut(s)	116
KpnI	GGTACC	1 cut(s)	432
Kzo9I	GATC	3 cut(s)	446, 450, 455
LpnPI	CCDG	4 cut(s)	226, 238, 289, 453
Lsp1109I	GCAGC	2 cut(s)	256, 347
MaeI	CTAG	2 cut(s)	308, 469
MaeII	ACGT	1 cut(s)	25
MaeIII	GTNAC	2 cut(s)	135, 248
MalI	GATC	3 cut(s)	448, 452, 457
MbiI	CCGCTC	1 cut(s)	372
MboI	GATC	3 cut(s)	446, 450, 455
MboII	GAAGA	4 cut(s)	162, 304, 309, 341
MhlI	GDGCHC	3 cut(s)	10, 260, 439
MluCI	AATT	2 cut(s)	124, 391
MlyI	GAGTC	1 cut(s)	309
MnlI	CCTC	3 cut(s)	83, 130, 227
MspA1I	CMGCKG	1 cut(s)	326
MwoI	GCNNNNNNNGC	3 cut(s)	48, 332, 341
NdeII	GATC	3 cut(s)	446, 450, 455
NlaIII	CATG	1 cut(s)	116
NlaIV	GGNNCC	1 cut(s)	430
NmuCI	GTSAC	1 cut(s)	248
NspI	RCATGY	1 cut(s)	116
PcsI	WCGNNNNNNNCGW	1 cut(s)	357
PkrI	GCNGC	2 cut(s)	246, 337
PleI	GAGTC	1 cut(s)	308
PpsI	GAGTC	1 cut(s)	308
Ppu21I	YACGTR	1 cut(s)	26
PspN4I	GGNNCC	1 cut(s)	430
PstI	CTGCAG	1 cut(s)	15
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	3 cut(s)	28, 230, 430
RsaNI	GTAC	3 cut(s)	27, 229, 429
SatI	GCNGC	2 cut(s)	245, 336
Sau3AI	GATC	3 cut(s)	446, 450, 455
SchI	GAGTC	1 cut(s)	309
SduI	GDGCHC	3 cut(s)	10, 260, 439
SetI	ASST	6 cut(s)	28, 44, 101, 142, 328, 358
SfcI	CTRYAG	1 cut(s)	11
SnaBI	TACGTA	1 cut(s)	26
Sse9I	AATT	2 cut(s)	124, 391
SsiI	CCGC	4 cut(s)	49, 110, 277, 372
SspMI	CTAG	2 cut(s)	308, 469
TaaI	ACNGT	2 cut(s)	57, 69
TaiI	ACGT	1 cut(s)	28
TaqI	TCGA	1 cut(s)	449
TasI	AATT	2 cut(s)	124, 391
TatI	WGTACW	1 cut(s)	228
TscAI	CASTG	3 cut(s)	15, 62, 257
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	2 cut(s)	244, 335
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	1 cut(s)	155
TspGWI	ACGGA	1 cut(s)	349
TspRI	CASTG	3 cut(s)	15, 62, 257
XapI	RAATTY	1 cut(s)	124
XceI	RCATGY	1 cut(s)	116
XspI	CTAG	2 cut(s)	308, 469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.