pycom02g04080

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Forward (+)
2687825 .. 2688509
685 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 312 bp
ATGAGTTTGGCAATTGTGCGTAAGCCAAATGCTGTTGCTGTTATCAGTCATGCTACCATTGTTAGTTGTACTAGAATTCTATGGAGGTGGCAAAGAACTCCATGGTTTCAGTGTGGTTTAATGGAAGACTTGGCGCAAAACCAGCGCAGTGGTGTTCTAGTATTCATACATTTGACTCTACTTAGTAGGATAAGGCTTTGTTGTTGTTGTTGTTTGTATGCAAAATCAGGCCATCCAAATGAAGCATCTAATTTTTTTCCCAGGATGGATAAAAGGAATATTGTTTCTTTGAATGCCATGATATATTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

104

Amino Acids

11.8

Weight (kDa)

9.45

Isoelectric Point (pI)

45.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 75
AfaI GTAC 1 cut(s) 70
AgsI TTSAA 1 cut(s) 292
AjnI CCWGG 1 cut(s) 260
AoxI GGCC 1 cut(s) 229
ApoI RAATTY 1 cut(s) 75
AspLEI GCGC 2 cut(s) 136, 147
BbsI GAAGAC 1 cut(s) 132
BccI CCATC 2 cut(s) 240, 259
BciT130I CCWGG 1 cut(s) 262
BfaI CTAG 2 cut(s) 72, 158
Bme1390I CCNGG 1 cut(s) 262
BmrFI CCNGG 1 cut(s) 262
BmsI GCATC 1 cut(s) 254
BpiI GAAGAC 1 cut(s) 132
BsaJI CCNNGG 2 cut(s) 101, 260
BseBI CCWGG 1 cut(s) 262
BseDI CCNNGG 2 cut(s) 101, 260
BseGI GGATG 2 cut(s) 232, 270
BshFI GGCC 1 cut(s) 231
BsmI GAATGC 1 cut(s) 298
BsnI GGCC 1 cut(s) 231
Bsp19I CCATGG 1 cut(s) 101
BspANI GGCC 1 cut(s) 231
BssECI CCNNGG 2 cut(s) 101, 260
BssT1I CCWWGG 1 cut(s) 101
Bst2UI CCWGG 1 cut(s) 262
BstDEI CTNAG 1 cut(s) 182
BstDSI CCRYGG 1 cut(s) 101
BstF5I GGATG 2 cut(s) 232, 270
BstHHI GCGC 2 cut(s) 136, 147
BstMWI GCNNNNNNNGC 1 cut(s) 142
BstNI CCWGG 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 260
BstV2I GAAGAC 1 cut(s) 132
BstXI CCANNNNNNTGG 1 cut(s) 149
BsuRI GGCC 1 cut(s) 231
BtgI CCRYGG 1 cut(s) 101
BtsCI GGATG 2 cut(s) 232, 270
BtsI GCAGTG 1 cut(s) 154
BtsIMutI CAGTG 2 cut(s) 116, 154
CfoI GCGC 2 cut(s) 136, 147
Csp6I GTAC 1 cut(s) 69
CviAII CATG 3 cut(s) 50, 102, 298
CviJI RGCY 3 cut(s) 25, 196, 231
CviKI_1 RGCY 3 cut(s) 25, 196, 231
CviQI GTAC 1 cut(s) 69
DdeI CTNAG 1 cut(s) 182
Eco130I CCWWGG 1 cut(s) 101
EcoRI GAATTC 1 cut(s) 75
EcoRII CCWGG 1 cut(s) 260
EcoT14I CCWWGG 1 cut(s) 101
ErhI CCWWGG 1 cut(s) 101
FaeI CATG 3 cut(s) 53, 105, 301
FaiI YATR 7 cut(s) 51, 82, 103, 167, 219, 299, 304
FatI CATG 3 cut(s) 49, 101, 297
FokI GGATG 2 cut(s) 219, 277
FspBI CTAG 2 cut(s) 72, 158
GlaI GCGC 2 cut(s) 135, 146
HaeIII GGCC 1 cut(s) 231
HhaI GCGC 2 cut(s) 136, 147
Hin1II CATG 3 cut(s) 53, 105, 301
Hin6I GCGC 2 cut(s) 134, 145
HinP1I GCGC 2 cut(s) 134, 145
HinfI GANTC 1 cut(s) 175
HpyCH4V TGCA 1 cut(s) 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 142
HpyF3I CTNAG 1 cut(s) 182
Hsp92II CATG 3 cut(s) 53, 105, 301
HspAI GCGC 2 cut(s) 134, 145
LpnPI CCDG 4 cut(s) 155, 213, 247, 274
LweI GCATC 1 cut(s) 254
MaeI CTAG 2 cut(s) 72, 158
MboII GAAGA 1 cut(s) 137
MfeI CAATTG 1 cut(s) 12
MluCI AATT 3 cut(s) 12, 75, 250
MlyI GAGTC 1 cut(s) 169
MnlI CCTC 1 cut(s) 78
MseI TTAA 1 cut(s) 119
MslI CAYNNNNRTG 1 cut(s) 237
MspR9I CCNGG 1 cut(s) 262
MunI CAATTG 1 cut(s) 12
Mva1269I GAATGC 1 cut(s) 298
MvaI CCWGG 1 cut(s) 262
MwoI GCNNNNNNNGC 1 cut(s) 142
NcoI CCATGG 1 cut(s) 101
NlaIII CATG 3 cut(s) 53, 105, 301
PctI GAATGC 1 cut(s) 298
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
Psp6I CCWGG 1 cut(s) 260
PspGI CCWGG 1 cut(s) 260
RsaI GTAC 1 cut(s) 70
RsaNI GTAC 1 cut(s) 69
RseI CAYNNNNRTG 1 cut(s) 237
SaqAI TTAA 1 cut(s) 119
SchI GAGTC 1 cut(s) 169
ScrFI CCNGG 1 cut(s) 262
SetI ASST 1 cut(s) 89
SfaNI GCATC 1 cut(s) 254
SgeI CNNG 9 cut(s) 62, 84, 114, 142, 154, 170, 240, 273, 274
SmiMI CAYNNNNRTG 1 cut(s) 237
Sse9I AATT 3 cut(s) 12, 75, 250
SspI AATATT 1 cut(s) 280
SspMI CTAG 2 cut(s) 72, 158
StyD4I CCNGG 1 cut(s) 260
StyI CCWWGG 1 cut(s) 101
TasI AATT 3 cut(s) 12, 75, 250
TatI WGTACW 1 cut(s) 68
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TscAI CASTG 2 cut(s) 116, 154
TspDTI ATGAA 2 cut(s) 154, 255
TspRI CASTG 2 cut(s) 116, 154
XapI RAATTY 1 cut(s) 75
XspI CTAG 2 cut(s) 72, 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.