Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2736071 .. 2736619

Gene Structure 549 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGCCGAGCCGAAAAATAGCAGTCATAGGCCAGGACTGGGAGGTGGTGGTCCTCCAGAAGAAGCCCAATATTGCCCGTGCCCTCCGCGACCCGAAGGTGGTGAACCAGGCTATGCGGTCGGGCATGCCGGTCCAGACCATCAAGAAATTCGACGGGGGCTCGAACAAGAAGGCGGCGCCGGTGGTCAGCGTTAAGAAGCTCGATGAGGCGGCCGAGGCAGCGGCGCTGGAGCGGGTGTCGACGGAGGTGCGACAGGCGATGCAGAAGGCGCGGCTGGAGAAGAAGATGAGCCAGGCGGAGCTGGCGAAGCGGATCAATCCGAGCGGCCTCAGGTGGTGCAGGAGTACGAGAACGGGAAGGCGGTGCCGAACCAGGCGGTGCTGGCGAAGATGGAGAGGGTTCTGGGAGTTAAGCTCCGGGGCAAAGTTGGGAAATAGAAAAAGTCCTGTCAGGGTTGTTTTGTGTCGTGAACGTGATGTTGTCTGTTGTGTGGGTGCGTGTGTATATGGGGTCTGTTTAAAATCGAGAGTTAAGAACTGGGTGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003700 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009755 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032870 GO:0033993 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HTH_3 MBF1

Protein Analysis

183

Amino Acids

20.69

Weight (kDa)

10.95

Isoelectric Point (pI)

60.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBF1	PF08523	11 - 79	1.5e-17	Multiprotein bridging factor 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	175, 363
AccBSI	CCGCTC	2 cut(s)	232, 324
AccI	GTMKAC	1 cut(s)	239
AccII	CGCG	2 cut(s)	87, 271
AclWI	GGATC	1 cut(s)	320
AcoI	YGGCCR	1 cut(s)	210
AcsI	RAATTY	1 cut(s)	146
AcyI	GRCGYC	1 cut(s)	176
AfaI	GTAC	1 cut(s)	346
AfiI	CCNNNNNNNGG	2 cut(s)	37, 97
AjnI	CCWGG	4 cut(s)	30, 105, 291, 371
AluBI	AGCT	3 cut(s)	199, 301, 414
AluI	AGCT	3 cut(s)	199, 301, 414
AlwI	GGATC	1 cut(s)	320
AoxI	GGCC	3 cut(s)	28, 210, 325
ApeKI	GCWGC	1 cut(s)	218
ApoI	RAATTY	1 cut(s)	146
AspLEI	GCGC	3 cut(s)	178, 226, 271
AspS9I	GGNCC	2 cut(s)	49, 130
AsuC2I	CCSGG	1 cut(s)	418
AsuHPI	GGTGA	1 cut(s)	112
AvaII	GGWCC	2 cut(s)	49, 130
AxyI	CCTNAGG	1 cut(s)	329
BaeGI	GKGCMC	1 cut(s)	82
BanI	GGYRCC	2 cut(s)	175, 363
BanII	GRGCYC	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	230
BccI	CCATC	2 cut(s)	146, 384
BcgI	CGANNNNNNTGC	2 cut(s)	229, 263
BciT130I	CCWGG	4 cut(s)	32, 107, 293, 373
BcnI	CCSGG	1 cut(s)	418
BfoI	RGCGCY	2 cut(s)	179, 227
BisI	GCNGC	6 cut(s)	174, 210, 219, 222, 272, 325
BlsI	GCNGC	6 cut(s)	175, 211, 220, 223, 273, 326
Bme1390I	CCNGG	5 cut(s)	32, 107, 293, 373, 418
Bme18I	GGWCC	2 cut(s)	49, 130
BmgT120I	GGNCC	2 cut(s)	49, 130
BmiI	GGNNCC	2 cut(s)	177, 365
BmrFI	CCNGG	5 cut(s)	32, 107, 293, 373, 418
BmrI	ACTGGG	2 cut(s)	46, 547
BmsI	GCATC	1 cut(s)	249
BmuI	ACTGGG	2 cut(s)	46, 547
BplI	GAGNNNNNCTC	2 cut(s)	398, 430
BpmI	CTGGAG	3 cut(s)	38, 248, 296
BpuMI	CCSGG	1 cut(s)	418
BsaHI	GRCGYC	1 cut(s)	176
BsaJI	CCNNGG	2 cut(s)	213, 417
BsaXI	ACNNNNNCTCC	2 cut(s)	221, 251
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 97
Bse118I	RCCGGY	2 cut(s)	127, 178
Bse1I	ACTGG	2 cut(s)	41, 542
Bse21I	CCTNAGG	1 cut(s)	329
BseBI	CCWGG	4 cut(s)	32, 107, 293, 373
BseDI	CCNNGG	2 cut(s)	213, 417
BseLI	CCNNNNNNNGG	2 cut(s)	37, 97
BseMII	CTCAG	1 cut(s)	343
BseNI	ACTGG	2 cut(s)	41, 542
BseSI	GKGCMC	1 cut(s)	82
BseX3I	CGGCCG	1 cut(s)	210
BseXI	GCAGC	1 cut(s)	230
BsgI	GTGCAG	1 cut(s)	358
Bsh1236I	CGCG	2 cut(s)	87, 271
Bsh1285I	CGRYCG	2 cut(s)	119, 213
BshFI	GGCC	3 cut(s)	30, 212, 327
BshNI	GGYRCC	2 cut(s)	175, 363
BsiEI	CGRYCG	2 cut(s)	119, 213
BsiSI	CCGG	3 cut(s)	128, 179, 417
BslI	CCNNNNNNNGG	2 cut(s)	37, 97
BsnI	GGCC	3 cut(s)	30, 212, 327
Bsp1286I	GDGCHC	2 cut(s)	82, 161
Bsp143I	GATC	1 cut(s)	312
BspANI	GGCC	3 cut(s)	30, 212, 327
BspCNI	CTCAG	1 cut(s)	342
BspFNI	CGCG	2 cut(s)	87, 271
BspLI	GGNNCC	2 cut(s)	177, 365
BspPI	GGATC	1 cut(s)	320
BspT107I	GGYRCC	2 cut(s)	175, 363
BsrBI	CCGCTC	2 cut(s)	232, 324
BsrFI	RCCGGY	2 cut(s)	127, 178
BsrI	ACTGG	2 cut(s)	41, 542
BssAI	RCCGGY	2 cut(s)	127, 178
BssECI	CCNNGG	2 cut(s)	213, 417
BssMI	GATC	1 cut(s)	312
BssNI	GRCGYC	1 cut(s)	176
Bst2UI	CCWGG	4 cut(s)	32, 107, 293, 373
BstACI	GRCGYC	1 cut(s)	176
BstC8I	GCNNGC	3 cut(s)	125, 303, 383
BstDEI	CTNAG	1 cut(s)	329
BstFNI	CGCG	2 cut(s)	87, 271
BstH2I	RGCGCY	2 cut(s)	179, 227
BstHHI	GCGC	3 cut(s)	178, 226, 271
BstKTI	GATC	1 cut(s)	315
BstMBI	GATC	1 cut(s)	312
BstMCI	CGRYCG	2 cut(s)	119, 213
BstMWI	GCNNNNNNNGC	6 cut(s)	215, 218, 268, 302, 307, 382
BstNI	CCWGG	4 cut(s)	32, 107, 293, 373
BstNSI	RCATGY	1 cut(s)	127
BstSCI	CCNGG	5 cut(s)	30, 105, 291, 371, 416
BstSLI	GKGCMC	1 cut(s)	82
BstUI	CGCG	2 cut(s)	87, 271
BstV1I	GCAGC	1 cut(s)	230
BstZI	CGGCCG	1 cut(s)	210
Bsu36I	CCTNAGG	1 cut(s)	329
BsuRI	GGCC	3 cut(s)	30, 212, 327
BtgZI	GCGATG	1 cut(s)	272
Cac8I	GCNNGC	3 cut(s)	125, 303, 383
CfoI	GCGC	3 cut(s)	178, 226, 271
Cfr10I	RCCGGY	2 cut(s)	127, 178
Cfr13I	GGNCC	2 cut(s)	49, 130
Csp6I	GTAC	1 cut(s)	345
CviAII	CATG	1 cut(s)	124
CviQI	GTAC	1 cut(s)	345
DdeI	CTNAG	1 cut(s)	329
DinI	GGCGCC	1 cut(s)	177
DpnI	GATC	1 cut(s)	314
DpnII	GATC	1 cut(s)	312
DraI	TTTAAA	1 cut(s)	519
EaeI	YGGCCR	1 cut(s)	210
EagI	CGGCCG	1 cut(s)	210
EciI	GGCGGA	1 cut(s)	311
EclXI	CGGCCG	1 cut(s)	210
Eco24I	GRGCYC	1 cut(s)	161
Eco47I	GGWCC	2 cut(s)	49, 130
Eco52I	CGGCCG	1 cut(s)	210
Eco81I	CCTNAGG	1 cut(s)	329
EcoRII	CCWGG	4 cut(s)	30, 105, 291, 371
EcoT38I	GRGCYC	1 cut(s)	161
EgeI	GGCGCC	1 cut(s)	177
EheI	GGCGCC	1 cut(s)	177
FaeI	CATG	1 cut(s)	127
FaiI	YATR	5 cut(s)	26, 113, 125, 505, 507
FatI	CATG	1 cut(s)	123
FauI	CCCGC	1 cut(s)	225
FblI	GTMKAC	1 cut(s)	239
Fnu4HI	GCNGC	6 cut(s)	174, 210, 219, 222, 272, 325
FriOI	GRGCYC	1 cut(s)	161
Fsp4HI	GCNGC	6 cut(s)	174, 210, 219, 222, 272, 325
GlaI	GCGC	3 cut(s)	177, 225, 270
GluI	GCNGC	6 cut(s)	174, 210, 219, 222, 272, 325
GsuI	CTGGAG	3 cut(s)	38, 248, 296
HaeII	RGCGCY	2 cut(s)	179, 227
HaeIII	GGCC	3 cut(s)	30, 212, 327
HapII	CCGG	3 cut(s)	128, 179, 417
HhaI	GCGC	3 cut(s)	178, 226, 271
Hin1I	GRCGYC	1 cut(s)	176
Hin1II	CATG	1 cut(s)	127
Hin6I	GCGC	3 cut(s)	176, 224, 269
HinP1I	GCGC	3 cut(s)	176, 224, 269
HincII	GTYRAC	1 cut(s)	240
HindII	GTYRAC	1 cut(s)	240
HpaII	CCGG	3 cut(s)	128, 179, 417
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	3 cut(s)	103, 240, 470
Hpy188I	TCNGA	1 cut(s)	321
Hpy188III	TCNNGA	5 cut(s)	55, 133, 142, 467, 525
Hpy8I	GTNNAC	3 cut(s)	103, 240, 470
Hpy99I	CGWCG	2 cut(s)	155, 244
HpyAV	CCTTC	4 cut(s)	88, 163, 259, 351
HpyCH4IV	ACGT	1 cut(s)	472
HpyCH4V	TGCA	2 cut(s)	262, 339
HpyF10VI	GCNNNNNNNGC	6 cut(s)	215, 218, 268, 302, 307, 382
HpyF3I	CTNAG	1 cut(s)	329
HpySE526I	ACGT	1 cut(s)	472
Hsp92I	GRCGYC	1 cut(s)	176
Hsp92II	CATG	1 cut(s)	127
HspAI	GCGC	3 cut(s)	176, 224, 269
KasI	GGCGCC	1 cut(s)	175
Kzo9I	GATC	1 cut(s)	312
LmnI	GCTCC	3 cut(s)	229, 298, 419
Lsp1109I	GCAGC	1 cut(s)	230
LweI	GCATC	1 cut(s)	249
MaeII	ACGT	1 cut(s)	472
MalI	GATC	1 cut(s)	314
MbiI	CCGCTC	2 cut(s)	232, 324
MboI	GATC	1 cut(s)	312
MboII	GAAGA	4 cut(s)	70, 292, 295, 399
MhlI	GDGCHC	2 cut(s)	82, 161
MluCI	AATT	1 cut(s)	146
Mly113I	GGCGCC	1 cut(s)	176
MnlI	CCTC	8 cut(s)	34, 62, 92, 199, 208, 238, 338, 389
MseI	TTAA	4 cut(s)	192, 410, 518, 531
MspA1I	CMGCKG	1 cut(s)	221
MspI	CCGG	3 cut(s)	128, 179, 417
MspR9I	CCNGG	5 cut(s)	32, 107, 293, 373, 418
MvaI	CCWGG	4 cut(s)	32, 107, 293, 373
MvnI	CGCG	2 cut(s)	87, 271
MwoI	GCNNNNNNNGC	6 cut(s)	215, 218, 268, 302, 307, 382
NarI	GGCGCC	1 cut(s)	176
NciI	CCSGG	1 cut(s)	418
NdeII	GATC	1 cut(s)	312
NlaIII	CATG	1 cut(s)	127
NlaIV	GGNNCC	2 cut(s)	177, 365
NmeAIII	GCCGAG	2 cut(s)	30, 238
NspI	RCATGY	1 cut(s)	127
PaeI	GCATGC	1 cut(s)	127
PkrI	GCNGC	6 cut(s)	175, 211, 220, 223, 273, 326
PluTI	GGCGCC	1 cut(s)	179
Psp6I	CCWGG	4 cut(s)	30, 105, 291, 371
PspGI	CCWGG	4 cut(s)	30, 105, 291, 371
PspN4I	GGNNCC	2 cut(s)	177, 365
PspPI	GGNCC	2 cut(s)	49, 130
RsaI	GTAC	1 cut(s)	346
RsaNI	GTAC	1 cut(s)	345
SalI	GTCGAC	1 cut(s)	238
SaqAI	TTAA	4 cut(s)	192, 410, 518, 531
SatI	GCNGC	6 cut(s)	174, 210, 219, 222, 272, 325
Sau3AI	GATC	1 cut(s)	312
Sau96I	GGNCC	2 cut(s)	49, 130
ScrFI	CCNGG	5 cut(s)	32, 107, 293, 373, 418
SduI	GDGCHC	2 cut(s)	82, 161
SetI	ASST	8 cut(s)	45, 99, 201, 249, 303, 335, 416, 475
SfaNI	GCATC	1 cut(s)	249
SfoI	GGCGCC	1 cut(s)	177
SgrAI	CRCCGGYG	1 cut(s)	178
SinI	GGWCC	2 cut(s)	49, 130
SphI	GCATGC	1 cut(s)	127
Sse9I	AATT	1 cut(s)	146
SspDI	GGCGCC	1 cut(s)	175
SspI	AATATT	1 cut(s)	70
StyD4I	CCNGG	5 cut(s)	30, 105, 291, 371, 416
TaiI	ACGT	1 cut(s)	475
TaqI	TCGA	5 cut(s)	150, 161, 201, 239, 524
TasI	AATT	1 cut(s)	146
TauI	GCSGC	5 cut(s)	176, 212, 224, 274, 327
Tru1I	TTAA	4 cut(s)	192, 410, 518, 531
Tru9I	TTAA	4 cut(s)	192, 410, 518, 531
TseI	GCWGC	1 cut(s)	218
TspGWI	ACGGA	1 cut(s)	257
VpaK11BI	GGWCC	2 cut(s)	49, 130
XapI	RAATTY	1 cut(s)	146
XceI	RCATGY	1 cut(s)	127
XmiI	GTMKAC	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.