pycom02g04210

Glycine-rich cell wall structural

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Forward (+)
2751340 .. 2752863
1524 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1524 bp
ATGGGAATTACGATATTCGGGGCAGGGAAGGTGGTTCTGTGGGTGGTGGCGGCGATGAGCTTAATGTCTGAGTCGTGTGTGAGGGGAATAAGGAAGATGGATGATCATGCTCATGGGGAGAAGGGTAGTGATGATGGAAATAAGTTAGTGAAAAATCCAGGGCGGTCCTTTGATGGGCCGGCTGCAGGAAATCCAAATATTCCGGGTGGGATTAATGGCGGTGGTGGGTTTGGAGGAGAGGGCAAAGGGTTCGGTTTTAGTTTTGGAGGGAGGGGATCATATAGTTATAGTTATGGTACTTCTGGAAAACCTGCCAATGCAGTTGGTTTTGGGAAGCCTGACTGTGATGGAAAAGGTGGAGGGGCTGGGAAAGGTGGCGGTGGTTCTCATGGGGTTGACAAAGGTGGAGGGGCTGGTAGTGGCATTGGTGGTGGTGGAAGCCACCATAAGAATAAAAAAGAGAACAAGCACCATCAAGGCGGTAGCCATGGTGGAGGTGGAATTGGGGGAGGCATTGGTAAAGGAATTGGTGGTGGAGGTCATGGTGCTGGAGGAGGAATAGGAAAAGGCCATAAAGGTGGTGGAGGTATTGACAAAGGAGGGGGCGTTGGTGGCGGCATTGGAAAAGGTGGGGGTGTTGGTGGTAGCATTGGCAAAGGAGGGGGCGTTGGTGGCGGCATTGGAAAAGGTGGGGGTGTCGGTGGCGGCATTGGCAAAGGAGGGGGCGTTGGTGGTGGCATTGGCAAAGGAGGGGGCGCTGGTAGCGGCATTGGAAAAGGTGGGGGTGTTGGTGGCGGTAGTGGTGCAAGTGGAGGCATTGGTGGTGGTGCAGGTGGTGGTATTGGCGGTGGTGGTGCAGGTGGAGGCATTGGCGGTGGTAGTGGTGCAGGTGGAGGCATTGGCAGTGGTAGTGGTGCAGGTGGAGGCATTGGCGGTGGTGGTGGTGCTGGTGGTAGTATTGGTGGTGGTACAGGTGGAGGCATTGGCGGCGGCGGTGGTGCCGGTGGTAGTATTGGTGGTGGTGCAGGTGGAGGCATTGGCGGTGGTGGTGCAGGTGGAGGCATTGGCGGTGGTGGTGCAGGTGGAGGCATTGGCGGTGGTGGTGCCGGTGGCGGCATTGGTGGTGGTCCCGGTGGCAGCATTGGTGGCGGTGGTATTGGTGGTGGTGCAGGTGGCGGTGTTGGTGCTGGTGGGGGCTTTGGCGGTGGTGCTGGTGGGGGCATTGGTGGTGGTGCAGGTGGCGGCGTTGGTGGTGGTGCAGGCGGTGCTGGTGGGGGCTTTAGCGGTGGTGCTGGTGGGGGCTTTGGCGGTGGTGCAGGTGGGGGCATTGGTGGTGGTGGTGCTGCCGGTGGAGGAGGTTTTGGTGGGGGTGGGGGTGGTGGAGTTGGGGGTGGATTTGGTGGTGGTGTTGGTGGAGGATTTGGTGGTGGCGCTGGTGGTGTTGGAGGTGGAGGAGGAGGAGGATTTGGCGGGGGCGGCGGAGGTGGTATTGGTGGAGGCATTATTAACAATGGACATGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

508

Amino Acids

40.19

Weight (kDa)

9.95

Isoelectric Point (pI)

40.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 998, 1103
AclWI GGATC 1 cut(s) 283
AfaI GTAC 2 cut(s) 298, 970
AfiI CCNNNNNNNGG 2 cut(s) 174, 185
AjnI CCWGG 1 cut(s) 157
AluBI AGCT 1 cut(s) 60
AluI AGCT 1 cut(s) 60
AlwI GGATC 1 cut(s) 283
AoxI GGCC 2 cut(s) 176, 568
ApeKI GCWGC 3 cut(s) 182, 1137, 1343
AseI ATTAAT 1 cut(s) 213
AspLEI GCGC 2 cut(s) 758, 1433
AspS9I GGNCC 3 cut(s) 165, 176, 1127
AsuC2I CCSGG 2 cut(s) 204, 1131
AvaII GGWCC 2 cut(s) 165, 1127
BanI GGYRCC 2 cut(s) 998, 1103
BbvI GCAGC 3 cut(s) 169, 1149, 1330
BccI CCATC 5 cut(s) 91, 128, 167, 341, 480
BcgI CGANNNNNNTGC 2 cut(s) 232, 266
BciT130I CCWGG 1 cut(s) 159
BclI TGATCA 1 cut(s) 103
BcnI CCSGG 2 cut(s) 204, 1131
BfmI CTRYAG 1 cut(s) 183
BfoI RGCGCY 2 cut(s) 759, 1434
Bme1390I CCNGG 3 cut(s) 159, 204, 1131
Bme18I GGWCC 2 cut(s) 165, 1127
BmgT120I GGNCC 3 cut(s) 165, 176, 1127
BmiI GGNNCC 3 cut(s) 1000, 1105, 1129
BmrFI CCNGG 3 cut(s) 159, 204, 1131
BpmI CTGGAG 1 cut(s) 570
BpuMI CCSGG 2 cut(s) 204, 1131
BsaJI CCNNGG 2 cut(s) 158, 487
BsaXI ACNNNNNCTCC 6 cut(s) 591, 621, 651, 681, 711, 741
Bsc4I CCNNNNNNNGG 2 cut(s) 174, 185
Bse118I RCCGGY 4 cut(s) 178, 1001, 1106, 1346
BseBI CCWGG 1 cut(s) 159
BseDI CCNNGG 2 cut(s) 158, 487
BseGI GGATG 1 cut(s) 106
BseLI CCNNNNNNNGG 2 cut(s) 174, 185
BseMII CTCAG 1 cut(s) 60
BseRI GAGGAG 6 cut(s) 249, 567, 1368, 1467, 1470, 1473
BseXI GCAGC 3 cut(s) 169, 1149, 1330
BseYI CCCAGC 1 cut(s) 365
BshFI GGCC 2 cut(s) 178, 570
BshNI GGYRCC 2 cut(s) 998, 1103
BsiSI CCGG 6 cut(s) 179, 203, 1002, 1107, 1131, 1347
BslFI GGGAC 1 cut(s) 1113
BslI CCNNNNNNNGG 2 cut(s) 174, 185
BsmFI GGGAC 1 cut(s) 1113
BsnI GGCC 2 cut(s) 178, 570
Bsp143I GATC 2 cut(s) 103, 275
Bsp19I CCATGG 1 cut(s) 487
BspANI GGCC 2 cut(s) 178, 570
BspCNI CTCAG 1 cut(s) 61
BspLI GGNNCC 3 cut(s) 1000, 1105, 1129
BspMAI CTGCAG 1 cut(s) 187
BspPI GGATC 1 cut(s) 283
BspT107I GGYRCC 2 cut(s) 998, 1103
BsrFI RCCGGY 4 cut(s) 178, 1001, 1106, 1346
BssAI RCCGGY 4 cut(s) 178, 1001, 1106, 1346
BssECI CCNNGG 2 cut(s) 158, 487
BssMI GATC 2 cut(s) 103, 275
BssT1I CCWWGG 1 cut(s) 487
Bst2UI CCWGG 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 344
BstAPI GCANNNNNTGC 1 cut(s) 1265
BstC8I GCNNGC 2 cut(s) 180, 1261
BstDEI CTNAG 1 cut(s) 69
BstDSI CCRYGG 1 cut(s) 487
BstF5I GGATG 1 cut(s) 106
BstH2I RGCGCY 2 cut(s) 759, 1434
BstHHI GCGC 2 cut(s) 758, 1433
BstKTI GATC 2 cut(s) 106, 278
BstMBI GATC 2 cut(s) 103, 275
BstMWI GCNNNNNNNGC 8 cut(s) 612, 672, 711, 762, 987, 1146, 1265, 1476
BstNI CCWGG 1 cut(s) 159
BstNSI RCATGY 1 cut(s) 1520
BstSCI CCNGG 3 cut(s) 157, 202, 1129
BstSFI CTRYAG 1 cut(s) 183
BstV1I GCAGC 3 cut(s) 169, 1149, 1330
BstXI CCANNNNNNTGG 1 cut(s) 578
BsuRI GGCC 2 cut(s) 178, 570
BtgI CCRYGG 1 cut(s) 487
BtgZI GCGATG 1 cut(s) 68
BtsCI GGATG 1 cut(s) 106
BtsI GCAGTG 1 cut(s) 910
BtsIMutI CAGTG 1 cut(s) 910
Cac8I GCNNGC 2 cut(s) 180, 1261
CfoI GCGC 2 cut(s) 758, 1433
Cfr10I RCCGGY 4 cut(s) 178, 1001, 1106, 1346
Cfr13I GGNCC 3 cut(s) 165, 176, 1127
Csp6I GTAC 2 cut(s) 297, 969
CviAII CATG 6 cut(s) 107, 113, 389, 488, 542, 1517
CviQI GTAC 2 cut(s) 297, 969
DdeI CTNAG 1 cut(s) 69
DpnI GATC 2 cut(s) 105, 277
DpnII GATC 2 cut(s) 103, 275
EciI GGCGGA 1 cut(s) 1494
Eco130I CCWWGG 1 cut(s) 487
Eco47I GGWCC 2 cut(s) 165, 1127
EcoRII CCWGG 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 487
EcoT22I ATGCAT 1 cut(s) 1522
ErhI CCWWGG 1 cut(s) 487
FaeI CATG 6 cut(s) 110, 116, 392, 491, 545, 1520
FaqI GGGAC 1 cut(s) 1113
FatI CATG 6 cut(s) 106, 112, 388, 487, 541, 1516
FauI CCCGC 1 cut(s) 1463
FbaI TGATCA 1 cut(s) 103
FokI GGATG 1 cut(s) 113
GlaI GCGC 2 cut(s) 757, 1432
GsaI CCCAGC 1 cut(s) 369
GsuI CTGGAG 1 cut(s) 570
HaeII RGCGCY 2 cut(s) 759, 1434
HaeIII GGCC 2 cut(s) 178, 570
HapII CCGG 6 cut(s) 179, 203, 1002, 1107, 1131, 1347
HhaI GCGC 2 cut(s) 758, 1433
Hin1II CATG 6 cut(s) 110, 116, 392, 491, 545, 1520
Hin6I GCGC 2 cut(s) 756, 1431
HinP1I GCGC 2 cut(s) 756, 1431
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HinfI GANTC 1 cut(s) 71
HpaII CCGG 6 cut(s) 179, 203, 1002, 1107, 1131, 1347
Hpy166II GTNNAC 1 cut(s) 397
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 1 cut(s) 303
Hpy8I GTNNAC 1 cut(s) 397
HpyAV CCTTC 2 cut(s) 22, 115
HpyCH4III ACNGT 1 cut(s) 344
HpyF10VI GCNNNNNNNGC 8 cut(s) 612, 672, 711, 762, 987, 1146, 1265, 1476
HpyF3I CTNAG 1 cut(s) 69
Hsp92II CATG 6 cut(s) 110, 116, 392, 491, 545, 1520
HspAI GCGC 2 cut(s) 756, 1431
KroI GCCGGC 1 cut(s) 178
KroNI GCCGGC 1 cut(s) 180
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 2 cut(s) 103, 275
Lsp1109I GCAGC 3 cut(s) 169, 1149, 1330
MalI GATC 2 cut(s) 105, 277
MboI GATC 2 cut(s) 103, 275
MboII GAAGA 1 cut(s) 106
MluCI AATT 3 cut(s) 6, 501, 525
MlyI GAGTC 1 cut(s) 80
MmeI TCCRAC 1 cut(s) 1423
Mph1103I ATGCAT 1 cut(s) 1522
MroNI GCCGGC 1 cut(s) 178
MseI TTAA 3 cut(s) 62, 213, 1506
MslI CAYNNNNRTG 2 cut(s) 111, 576
MspI CCGG 6 cut(s) 179, 203, 1002, 1107, 1131, 1347
MspR9I CCNGG 3 cut(s) 159, 204, 1131
MvaI CCWGG 1 cut(s) 159
MwoI GCNNNNNNNGC 8 cut(s) 612, 672, 711, 762, 987, 1146, 1265, 1476
NaeI GCCGGC 1 cut(s) 180
NciI CCSGG 2 cut(s) 204, 1131
NcoI CCATGG 1 cut(s) 487
NdeII GATC 2 cut(s) 103, 275
NgoMIV GCCGGC 1 cut(s) 178
NlaIII CATG 6 cut(s) 110, 116, 392, 491, 545, 1520
NlaIV GGNNCC 3 cut(s) 1000, 1105, 1129
NsiI ATGCAT 1 cut(s) 1522
NspI RCATGY 1 cut(s) 1520
PdiI GCCGGC 1 cut(s) 180
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
PshBI ATTAAT 1 cut(s) 213
Psp6I CCWGG 1 cut(s) 157
PspFI CCCAGC 1 cut(s) 365
PspGI CCWGG 1 cut(s) 157
PspN4I GGNNCC 3 cut(s) 1000, 1105, 1129
PspPI GGNCC 3 cut(s) 165, 176, 1127
PstI CTGCAG 1 cut(s) 187
RsaI GTAC 2 cut(s) 298, 970
RsaNI GTAC 2 cut(s) 297, 969
RseI CAYNNNNRTG 2 cut(s) 111, 576
SaqAI TTAA 3 cut(s) 62, 213, 1506
Sau3AI GATC 2 cut(s) 103, 275
Sau96I GGNCC 3 cut(s) 165, 176, 1127
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 3 cut(s) 159, 204, 1131
SfcI CTRYAG 1 cut(s) 183
SinI GGWCC 2 cut(s) 165, 1127
SmiMI CAYNNNNRTG 2 cut(s) 111, 576
Sse9I AATT 3 cut(s) 6, 501, 525
SspI AATATT 1 cut(s) 199
StyD4I CCNGG 3 cut(s) 157, 202, 1129
StyI CCWWGG 1 cut(s) 487
TaaI ACNGT 1 cut(s) 344
TasI AATT 3 cut(s) 6, 501, 525
Tru1I TTAA 3 cut(s) 62, 213, 1506
Tru9I TTAA 3 cut(s) 62, 213, 1506
TscAI CASTG 1 cut(s) 910
TseI GCWGC 3 cut(s) 182, 1137, 1343
TspRI CASTG 1 cut(s) 910
VpaK11BI GGWCC 2 cut(s) 165, 1127
VspI ATTAAT 1 cut(s) 213
XceI RCATGY 1 cut(s) 1520
XcmI CCANNNNNNNNNTGG 2 cut(s) 494, 578
Zsp2I ATGCAT 1 cut(s) 1522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.