Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

3678609 .. 3679976

Gene Structure 1368 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGAATGATTTGGTATTGGATGGTGGGTTTGTGGTGCCCAAAGAGATCTCAAAAAATGATGGAATTGTGGCACAAGAAATTACAGGATCTAATGAGGCTTTCATTGCACTTGAAATCAATTCATTTGGCCAGTCGTTCAGTCTGACATATGTTTATGCACAAATGCAAATTATGCAATGCAGGGATTATAATGCAGAAAGTGAAAGGCAGAAATCCGTGGAGGAATTCTACCGGTTGAACCACATTAATCAAACGCATGATTTCGTGAAGAGGATGAGGGAGGAGTACAGCAAGTTGAATCGAGTCGAAATGAGCATATGGGAATGTTGTGAGCTGCTCAATGATGTTGTGGATGACAGTGATCCGGACTTGGATGAACCACAAATTGAGCACTTGCTGCAAACTGCTGAAGCCATTAGAAAAGACTATCCCAATGAAGATTGGTTGCACTTGACTGCTCTTATTCATGGAGACACACATCCTCTCGGGTGCGCTTTCGATGAATCCATTGTTCACCACAAGTTACATAAAAATTCTTTGCCCTTGCAGTATTTCAAGGAAAATCCAGATTGCAACAATCCTTCCTACAACACCAAAAATGGGATTTACTCAAAAGGATGTGGACTAGACAATGTCATGATCTCATGGGGTCATGATGACTACATGTACTTGGTGGCCAAGGAAAACGGAACAACTTTGCCTCAGGCAGGATTGTTCATCATCCGGTATCACTCATTTTATCGTAAGTACATCACCAAATTCCCCCGGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016051 GO:0016053 GO:0016491 GO:0016701 GO:0019752 GO:0019852 GO:0019853 GO:0042364 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046364 GO:0046394 GO:0050113 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 map00053 map00562

Pfam Domains

Protein Families

MIOX

Protein Analysis

258

Amino Acids

29.82

Weight (kDa)

5.1

Isoelectric Point (pI)

36.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIOX	PF05153	71 - 156	3.2e-36	Myo-inositol oxygenase
MIOX	PF05153	157 - 248	3e-35	Myo-inositol oxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	189
AccB1I	GGYRCC	1 cut(s)	34
AccIII	TCCGGA	1 cut(s)	364
AclWI	GGATC	2 cut(s)	94, 356
AcoI	YGGCCR	2 cut(s)	127, 675
AcsI	RAATTY	3 cut(s)	224, 532, 758
AcuI	CTGAAG	1 cut(s)	429
AfaI	GTAC	3 cut(s)	287, 668, 749
AfiI	CCNNNNNNNGG	2 cut(s)	600, 707
AflIII	ACRYGT	1 cut(s)	663
AgeI	ACCGGT	1 cut(s)	231
AgsI	TTSAA	4 cut(s)	113, 238, 298, 556
AluBI	AGCT	1 cut(s)	334
AluI	AGCT	1 cut(s)	334
Alw21I	GWGCWC	1 cut(s)	393
Alw26I	GTCTC	1 cut(s)	465
AlwI	GGATC	2 cut(s)	94, 356
Ama87I	CYCGRG	1 cut(s)	485
Aor13HI	TCCGGA	1 cut(s)	364
AoxI	GGCC	2 cut(s)	127, 675
ApeKI	GCWGC	2 cut(s)	334, 397
ApoI	RAATTY	3 cut(s)	224, 532, 758
AseI	ATTAAT	1 cut(s)	246
AsiGI	ACCGGT	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	494
AsuC2I	CCSGG	1 cut(s)	766
AsuHPI	GGTGA	2 cut(s)	506, 745
AvaI	CYCGRG	1 cut(s)	485
AxyI	CCTNAGG	1 cut(s)	702
BaeGI	GKGCMC	1 cut(s)	39
BalI	TGGCCA	2 cut(s)	129, 677
BanI	GGYRCC	1 cut(s)	34
Bbv12I	GWGCWC	1 cut(s)	393
BbvI	GCAGC	2 cut(s)	321, 384
BccI	CCATC	2 cut(s)	14, 53
BcnI	CCSGG	1 cut(s)	766
BcoDI	GTCTC	1 cut(s)	465
BfaI	CTAG	1 cut(s)	626
BglII	AGATCT	1 cut(s)	45
BisI	GCNGC	2 cut(s)	335, 398
BlsI	GCNGC	2 cut(s)	336, 399
Bme1390I	CCNGG	1 cut(s)	766
BmeT110I	CYCGRG	1 cut(s)	485
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	766
BpuMI	CCSGG	1 cut(s)	766
BsaJI	CCNNGG	3 cut(s)	216, 678, 764
BsaWI	WCCGGW	3 cut(s)	231, 364, 723
Bsc4I	CCNNNNNNNGG	2 cut(s)	600, 707
Bse118I	RCCGGY	1 cut(s)	231
Bse1I	ACTGG	1 cut(s)	130
Bse21I	CCTNAGG	1 cut(s)	702
Bse3DI	GCAATG	2 cut(s)	102, 182
BseAI	TCCGGA	1 cut(s)	364
BseDI	CCNNGG	3 cut(s)	216, 678, 764
BseGI	GGATG	7 cut(s)	25, 279, 358, 379, 478, 623, 720
BseLI	CCNNNNNNNGG	2 cut(s)	600, 707
BseMI	GCAATG	2 cut(s)	102, 182
BseMII	CTCAG	1 cut(s)	716
BseNI	ACTGG	1 cut(s)	130
BseRI	GAGGAG	1 cut(s)	296
BseSI	GKGCMC	1 cut(s)	39
BseXI	GCAGC	2 cut(s)	321, 384
BshFI	GGCC	2 cut(s)	129, 677
BshNI	GGYRCC	1 cut(s)	34
BshTI	ACCGGT	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	393
BsiHKCI	CYCGRG	1 cut(s)	485
BsiSI	CCGG	4 cut(s)	232, 365, 724, 766
BslI	CCNNNNNNNGG	2 cut(s)	600, 707
BsmAI	GTCTC	1 cut(s)	465
BsnI	GGCC	2 cut(s)	129, 677
BsoBI	CYCGRG	1 cut(s)	485
Bsp1286I	GDGCHC	2 cut(s)	39, 393
Bsp13I	TCCGGA	1 cut(s)	364
Bsp143I	GATC	4 cut(s)	45, 86, 361, 639
BspANI	GGCC	2 cut(s)	129, 677
BspCNI	CTCAG	1 cut(s)	715
BspEI	TCCGGA	1 cut(s)	364
BspHI	TCATGA	2 cut(s)	636, 652
BspLI	GGNNCC	1 cut(s)	36
BspPI	GGATC	2 cut(s)	94, 356
BspT107I	GGYRCC	1 cut(s)	34
BsrDI	GCAATG	2 cut(s)	102, 182
BsrFI	RCCGGY	1 cut(s)	231
BsrI	ACTGG	1 cut(s)	130
BssAI	RCCGGY	1 cut(s)	231
BssECI	CCNNGG	3 cut(s)	216, 678, 764
BssMI	GATC	4 cut(s)	45, 86, 361, 639
BssT1I	CCWWGG	1 cut(s)	678
Bst4CI	ACNGT	1 cut(s)	359
Bst6I	CTCTTC	1 cut(s)	263
BstAPI	GCANNNNNTGC	2 cut(s)	172, 397
BstDEI	CTNAG	1 cut(s)	702
BstDSI	CCRYGG	1 cut(s)	216
BstENI	CCTNNNNNAGG	1 cut(s)	705
BstF5I	GGATG	7 cut(s)	25, 279, 358, 379, 478, 623, 720
BstHHI	GCGC	1 cut(s)	494
BstKTI	GATC	4 cut(s)	48, 89, 364, 642
BstMAI	GTCTC	1 cut(s)	465
BstMBI	GATC	4 cut(s)	45, 86, 361, 639
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 172, 397
BstNSI	RCATGY	1 cut(s)	667
BstSCI	CCNGG	1 cut(s)	764
BstSLI	GKGCMC	1 cut(s)	39
BstV1I	GCAGC	2 cut(s)	321, 384
BstX2I	RGATCY	2 cut(s)	45, 86
BstYI	RGATCY	2 cut(s)	45, 86
Bsu36I	CCTNAGG	1 cut(s)	702
BsuRI	GGCC	2 cut(s)	129, 677
BtgI	CCRYGG	1 cut(s)	216
BtsCI	GGATG	7 cut(s)	25, 279, 358, 379, 478, 623, 720
BtsIMutI	CAGTG	1 cut(s)	364
CciI	TCATGA	2 cut(s)	636, 652
CfoI	GCGC	1 cut(s)	494
Cfr10I	RCCGGY	1 cut(s)	231
Csp6I	GTAC	3 cut(s)	286, 667, 748
CspAI	ACCGGT	1 cut(s)	231
CviAII	CATG	6 cut(s)	257, 467, 637, 645, 653, 664
CviJI	RGCY	5 cut(s)	98, 129, 334, 413, 677
CviKI_1	RGCY	5 cut(s)	98, 129, 334, 413, 677
CviQI	GTAC	3 cut(s)	286, 667, 748
DdeI	CTNAG	1 cut(s)	702
DpnI	GATC	4 cut(s)	47, 88, 363, 641
DpnII	GATC	4 cut(s)	45, 86, 361, 639
EaeI	YGGCCR	2 cut(s)	127, 675
Eam1104I	CTCTTC	1 cut(s)	263
EarI	CTCTTC	1 cut(s)	263
Eco130I	CCWWGG	1 cut(s)	678
Eco57I	CTGAAG	1 cut(s)	429
Eco81I	CCTNAGG	1 cut(s)	702
Eco88I	CYCGRG	1 cut(s)	485
EcoNI	CCTNNNNNAGG	1 cut(s)	705
EcoRI	GAATTC	1 cut(s)	224
EcoT14I	CCWWGG	1 cut(s)	678
ErhI	CCWWGG	1 cut(s)	678
FaeI	CATG	6 cut(s)	260, 470, 640, 648, 656, 667
FatI	CATG	6 cut(s)	256, 466, 636, 644, 652, 663
FauNDI	CATATG	2 cut(s)	148, 317
Fnu4HI	GCNGC	2 cut(s)	335, 398
FokI	GGATG	7 cut(s)	32, 286, 365, 386, 465, 630, 707
Fsp4HI	GCNGC	2 cut(s)	335, 398
FspBI	CTAG	1 cut(s)	626
GlaI	GCGC	1 cut(s)	493
GluI	GCNGC	2 cut(s)	335, 398
HaeIII	GGCC	2 cut(s)	129, 677
HapII	CCGG	4 cut(s)	232, 365, 724, 766
HhaI	GCGC	1 cut(s)	494
Hin1II	CATG	6 cut(s)	260, 470, 640, 648, 656, 667
Hin6I	GCGC	1 cut(s)	492
HinP1I	GCGC	1 cut(s)	492
HinfI	GANTC	3 cut(s)	298, 303, 503
HpaII	CCGG	4 cut(s)	232, 365, 724, 766
HphI	GGTGA	2 cut(s)	506, 745
Hpy166II	GTNNAC	2 cut(s)	514, 623
Hpy188I	TCNGA	1 cut(s)	144
Hpy188III	TCNNGA	5 cut(s)	265, 365, 566, 637, 653
Hpy8I	GTNNAC	2 cut(s)	514, 623
HpyAV	CCTTC	1 cut(s)	591
HpyCH4III	ACNGT	1 cut(s)	359
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 172, 397
HpyF3I	CTNAG	1 cut(s)	702
Hsp92II	CATG	6 cut(s)	260, 470, 640, 648, 656, 667
HspAI	GCGC	1 cut(s)	492
Kpn2I	TCCGGA	1 cut(s)	364
Kzo9I	GATC	4 cut(s)	45, 86, 361, 639
LpnPI	CCDG	9 cut(s)	69, 143, 166, 245, 378, 579, 689, 693, 737
Lsp1109I	GCAGC	2 cut(s)	321, 384
MaeI	CTAG	1 cut(s)	626
MaeIII	GTNAC	1 cut(s)	522
MalI	GATC	4 cut(s)	47, 88, 363, 641
MboI	GATC	4 cut(s)	45, 86, 361, 639
MboII	GAAGA	2 cut(s)	280, 449
MflI	RGATCY	2 cut(s)	45, 86
MhlI	GDGCHC	2 cut(s)	39, 393
MlsI	TGGCCA	2 cut(s)	129, 677
MluCI	AATT	8 cut(s)	63, 78, 118, 168, 224, 384, 532, 758
MluNI	TGGCCA	2 cut(s)	129, 677
MlyI	GAGTC	1 cut(s)	312
MnlI	CCTC	7 cut(s)	88, 214, 264, 270, 274, 492, 711
Mox20I	TGGCCA	2 cut(s)	129, 677
MroI	TCCGGA	1 cut(s)	364
MscI	TGGCCA	2 cut(s)	129, 677
MseI	TTAA	1 cut(s)	246
Msp20I	TGGCCA	2 cut(s)	129, 677
MspI	CCGG	4 cut(s)	232, 365, 724, 766
MspR9I	CCNGG	1 cut(s)	766
MwoI	GCNNNNNNNGC	3 cut(s)	104, 172, 397
NciI	CCSGG	1 cut(s)	766
NdeI	CATATG	2 cut(s)	148, 317
NdeII	GATC	4 cut(s)	45, 86, 361, 639
NlaIII	CATG	6 cut(s)	260, 470, 640, 648, 656, 667
NlaIV	GGNNCC	1 cut(s)	36
NspI	RCATGY	1 cut(s)	667
PagI	TCATGA	2 cut(s)	636, 652
PciI	ACATGT	1 cut(s)	663
PfeI	GAWTC	2 cut(s)	298, 503
PflFI	GACNNNGTC	1 cut(s)	632
PinAI	ACCGGT	1 cut(s)	231
PkrI	GCNGC	2 cut(s)	336, 399
PleI	GAGTC	1 cut(s)	311
PpsI	GAGTC	1 cut(s)	311
PscI	ACATGT	1 cut(s)	663
PshBI	ATTAAT	1 cut(s)	246
PsiI	TTATAA	1 cut(s)	189
PspN4I	GGNNCC	1 cut(s)	36
PsuI	RGATCY	2 cut(s)	45, 86
PsyI	GACNNNGTC	1 cut(s)	632
RsaI	GTAC	3 cut(s)	287, 668, 749
RsaNI	GTAC	3 cut(s)	286, 667, 748
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	2 cut(s)	335, 398
Sau3AI	GATC	4 cut(s)	45, 86, 361, 639
SchI	GAGTC	1 cut(s)	312
ScrFI	CCNGG	1 cut(s)	766
SduI	GDGCHC	2 cut(s)	39, 393
SetI	ASST	1 cut(s)	336
Sse9I	AATT	8 cut(s)	63, 78, 118, 168, 224, 384, 532, 758
SspMI	CTAG	1 cut(s)	626
StyD4I	CCNGG	1 cut(s)	764
StyI	CCWWGG	1 cut(s)	678
TaaI	ACNGT	1 cut(s)	359
TaqI	TCGA	3 cut(s)	301, 306, 498
TasI	AATT	8 cut(s)	63, 78, 118, 168, 224, 384, 532, 758
TatI	WGTACW	3 cut(s)	285, 666, 747
TfiI	GAWTC	2 cut(s)	298, 503
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TscAI	CASTG	1 cut(s)	364
TseI	GCWGC	2 cut(s)	334, 397
TspDTI	ATGAA	8 cut(s)	17, 91, 111, 390, 450, 455, 516, 706
TspGWI	ACGGA	2 cut(s)	205, 702
TspRI	CASTG	1 cut(s)	364
Tth111I	GACNNNGTC	1 cut(s)	632
VspI	ATTAAT	1 cut(s)	246
XagI	CCTNNNNNAGG	1 cut(s)	705
XapI	RAATTY	3 cut(s)	224, 532, 758
XceI	RCATGY	1 cut(s)	667
XspI	CTAG	1 cut(s)	626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.