pycom02g05530

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Reverse (-)
3754120 .. 3754554
435 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 435 bp
ATGCCACCTACAGATTCACCGGACAGTGGGGGTACCGTCATCCACACATCGAAAACCATAAGAGCAGCCGCAACAGACAGCGGAGCCGCCAGGTTTCATTATGGAAGGATGAATGAAAAAATTGATGTTTATAATTATTGGGTAGTTCTATTAGAGCTAATTACTGGCCAACTTGCAATCATAGAAAGTGATGATCTTGACCACATAGTGGAGTGGGTGAATCCTGAGTTCCAGAATGGGGATTTAACAACTATTTTGGATCGAAGGATTCGAGGAGAGTTCGACGTGAATTCGGTCTGGAAAGCATTAGAGACAGCAATGGCATGCACAACTTTCACCTCCCAACATAGAGCCACCATGGCTTTTGTGCTGTGCCAATTAACACAATGTTTGGAAATGGAGGTGTCTAGGCATCGAGAAAGAACTCCAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

145

Amino Acids

16.24

Weight (kDa)

5.11

Isoelectric Point (pI)

41.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 132
Acc65I GGTACC 1 cut(s) 32
AccB1I GGYRCC 1 cut(s) 32
AccB7I CCANNNNNTGG 1 cut(s) 208
AciI CCGC 3 cut(s) 69, 81, 87
AclWI GGATC 1 cut(s) 267
AcoI YGGCCR 1 cut(s) 166
AcsI RAATTY 1 cut(s) 289
AdeI CACNNNGTG 1 cut(s) 208
AfaI GTAC 1 cut(s) 34
AfiI CCNNNNNNNGG 3 cut(s) 26, 208, 238
AjiI CACGTC 1 cut(s) 286
AjnI CCWGG 2 cut(s) 89, 427
AluBI AGCT 1 cut(s) 157
AluI AGCT 1 cut(s) 157
Alw26I GTCTC 1 cut(s) 305
AlwI GGATC 1 cut(s) 267
AoxI GGCC 1 cut(s) 166
ApeKI GCWGC 1 cut(s) 65
ApoI RAATTY 1 cut(s) 289
Asp718I GGTACC 1 cut(s) 32
AsuHPI GGTGA 3 cut(s) 9, 229, 328
BalI TGGCCA 1 cut(s) 168
BanI GGYRCC 1 cut(s) 32
BbvI GCAGC 1 cut(s) 77
BciT130I CCWGG 2 cut(s) 91, 429
BcoDI GTCTC 1 cut(s) 305
BfaI CTAG 1 cut(s) 408
BfmI CTRYAG 1 cut(s) 9
BglI GCCNNNNNGGC 1 cut(s) 359
BisI GCNGC 3 cut(s) 66, 69, 87
BlsI GCNGC 3 cut(s) 67, 70, 88
Bme1390I CCNGG 2 cut(s) 91, 429
BmgBI CACGTC 1 cut(s) 286
BmiI GGNNCC 2 cut(s) 34, 85
BmrFI CCNGG 2 cut(s) 91, 429
BmsI GCATC 1 cut(s) 421
BpmI CTGGAG 1 cut(s) 411
BsaJI CCNNGG 1 cut(s) 357
BsaWI WCCGGW 1 cut(s) 19
Bsc4I CCNNNNNNNGG 3 cut(s) 26, 208, 238
Bse1I ACTGG 1 cut(s) 169
Bse3DI GCAATG 1 cut(s) 324
BseBI CCWGG 2 cut(s) 91, 429
BseDI CCNNGG 1 cut(s) 357
BseGI GGATG 2 cut(s) 39, 114
BseLI CCNNNNNNNGG 3 cut(s) 26, 208, 238
BseMI GCAATG 1 cut(s) 324
BseMII CTCAG 1 cut(s) 216
BseNI ACTGG 1 cut(s) 169
BseRI GAGGAG 1 cut(s) 288
BseXI GCAGC 1 cut(s) 77
BshFI GGCC 1 cut(s) 168
BshNI GGYRCC 1 cut(s) 32
BsiSI CCGG 1 cut(s) 20
BslI CCNNNNNNNGG 3 cut(s) 26, 208, 238
BsmAI GTCTC 1 cut(s) 305
BsnI GGCC 1 cut(s) 168
Bsp143I GATC 2 cut(s) 193, 259
Bsp19I CCATGG 1 cut(s) 357
BspACI CCGC 3 cut(s) 69, 81, 87
BspANI GGCC 1 cut(s) 168
BspCNI CTCAG 1 cut(s) 217
BspLI GGNNCC 2 cut(s) 34, 85
BspPI GGATC 1 cut(s) 267
BspT107I GGYRCC 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 324
BsrI ACTGG 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 357
BssMI GATC 2 cut(s) 193, 259
BssT1I CCWWGG 1 cut(s) 357
Bst2UI CCWGG 2 cut(s) 91, 429
Bst4CI ACNGT 2 cut(s) 26, 37
BstC8I GCNNGC 1 cut(s) 325
BstDEI CTNAG 1 cut(s) 225
BstDSI CCRYGG 1 cut(s) 357
BstF5I GGATG 2 cut(s) 39, 114
BstKTI GATC 2 cut(s) 196, 262
BstMAI GTCTC 1 cut(s) 305
BstMBI GATC 2 cut(s) 193, 259
BstMWI GCNNNNNNNGC 1 cut(s) 359
BstNI CCWGG 2 cut(s) 91, 429
BstNSI RCATGY 1 cut(s) 327
BstSCI CCNGG 2 cut(s) 89, 427
BstSFI CTRYAG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 77
BsuRI GGCC 1 cut(s) 168
BtgI CCRYGG 1 cut(s) 357
BtrI CACGTC 1 cut(s) 286
BtsCI GGATG 2 cut(s) 39, 114
BtsIMutI CAGTG 1 cut(s) 31
Cac8I GCNNGC 1 cut(s) 325
Csp6I GTAC 1 cut(s) 33
CviAII CATG 2 cut(s) 324, 358
CviJI RGCY 7 cut(s) 68, 86, 157, 168, 353, 362, 432
CviKI_1 RGCY 7 cut(s) 68, 86, 157, 168, 353, 362, 432
CviQI GTAC 1 cut(s) 33
DdeI CTNAG 1 cut(s) 225
DpnI GATC 2 cut(s) 195, 261
DpnII GATC 2 cut(s) 193, 259
DraIII CACNNNGTG 1 cut(s) 208
EaeI YGGCCR 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 357
EcoRI GAATTC 1 cut(s) 289
EcoRII CCWGG 2 cut(s) 89, 427
EcoT14I CCWWGG 1 cut(s) 357
ErhI CCWWGG 1 cut(s) 357
FaeI CATG 2 cut(s) 327, 361
FaiI YATR 8 cut(s) 59, 102, 132, 182, 206, 325, 348, 359
FatI CATG 2 cut(s) 323, 357
Fnu4HI GCNGC 3 cut(s) 66, 69, 87
FokI GGATG 2 cut(s) 26, 121
Fsp4HI GCNGC 3 cut(s) 66, 69, 87
FspBI CTAG 1 cut(s) 408
GluI GCNGC 3 cut(s) 66, 69, 87
GsuI CTGGAG 1 cut(s) 411
HaeIII GGCC 1 cut(s) 168
HapII CCGG 1 cut(s) 20
Hin1II CATG 2 cut(s) 327, 361
HinfI GANTC 3 cut(s) 14, 220, 268
HpaII CCGG 1 cut(s) 20
HphI GGTGA 3 cut(s) 9, 229, 328
Hpy188III TCNNGA 5 cut(s) 197, 224, 232, 298, 416
Hpy99I CGWCG 1 cut(s) 287
HpyAV CCTTC 2 cut(s) 99, 258
HpyCH4III ACNGT 2 cut(s) 26, 37
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 2 cut(s) 176, 327
HpyF10VI GCNNNNNNNGC 1 cut(s) 359
HpyF3I CTNAG 1 cut(s) 225
HpySE526I ACGT 1 cut(s) 285
Hsp92II CATG 2 cut(s) 327, 361
KpnI GGTACC 1 cut(s) 36
Kzo9I GATC 2 cut(s) 193, 259
LmnI GCTCC 1 cut(s) 83
LpnPI CCDG 8 cut(s) 33, 76, 103, 150, 237, 245, 283, 414
Lsp1109I GCAGC 1 cut(s) 77
LweI GCATC 1 cut(s) 421
MaeI CTAG 1 cut(s) 408
MaeII ACGT 1 cut(s) 285
MalI GATC 2 cut(s) 195, 261
MboI GATC 2 cut(s) 193, 259
MlsI TGGCCA 1 cut(s) 168
MluCI AATT 5 cut(s) 120, 133, 159, 289, 377
MluNI TGGCCA 1 cut(s) 168
MnlI CCTC 3 cut(s) 266, 349, 394
Mox20I TGGCCA 1 cut(s) 168
MscI TGGCCA 1 cut(s) 168
MseI TTAA 2 cut(s) 245, 380
Msp20I TGGCCA 1 cut(s) 168
MspA1I CMGCKG 1 cut(s) 81
MspI CCGG 1 cut(s) 20
MspR9I CCNGG 2 cut(s) 91, 429
MvaI CCWGG 2 cut(s) 91, 429
MwoI GCNNNNNNNGC 1 cut(s) 359
NcoI CCATGG 1 cut(s) 357
NdeII GATC 2 cut(s) 193, 259
NlaIII CATG 2 cut(s) 327, 361
NlaIV GGNNCC 2 cut(s) 34, 85
NspI RCATGY 1 cut(s) 327
PaeI GCATGC 1 cut(s) 327
PcsI WCGNNNNNNNCGW 1 cut(s) 268
PfeI GAWTC 3 cut(s) 14, 220, 268
PflMI CCANNNNNTGG 1 cut(s) 208
PkrI GCNGC 3 cut(s) 67, 70, 88
PsiI TTATAA 1 cut(s) 132
Psp6I CCWGG 2 cut(s) 89, 427
PspGI CCWGG 2 cut(s) 89, 427
PspN4I GGNNCC 2 cut(s) 34, 85
RsaI GTAC 1 cut(s) 34
RsaNI GTAC 1 cut(s) 33
SaqAI TTAA 2 cut(s) 245, 380
SatI GCNGC 3 cut(s) 66, 69, 87
Sau3AI GATC 2 cut(s) 193, 259
ScrFI CCNGG 2 cut(s) 91, 429
SetI ASST 6 cut(s) 10, 95, 159, 288, 341, 405
SfaNI GCATC 1 cut(s) 421
SfcI CTRYAG 1 cut(s) 9
SphI GCATGC 1 cut(s) 327
Sse9I AATT 5 cut(s) 120, 133, 159, 289, 377
SsiI CCGC 3 cut(s) 69, 81, 87
SspMI CTAG 1 cut(s) 408
StyD4I CCNGG 2 cut(s) 89, 427
StyI CCWWGG 1 cut(s) 357
TaaI ACNGT 2 cut(s) 26, 37
TaiI ACGT 1 cut(s) 288
TaqI TCGA 5 cut(s) 50, 262, 271, 282, 415
TaqII GACCGA 1 cut(s) 283
TasI AATT 5 cut(s) 120, 133, 159, 289, 377
TauI GCSGC 2 cut(s) 71, 89
TfiI GAWTC 3 cut(s) 14, 220, 268
Tru1I TTAA 2 cut(s) 245, 380
Tru9I TTAA 2 cut(s) 245, 380
TscAI CASTG 1 cut(s) 31
TseI GCWGC 1 cut(s) 65
TspDTI ATGAA 3 cut(s) 86, 125, 129
TspRI CASTG 1 cut(s) 31
Van91I CCANNNNNTGG 1 cut(s) 208
XapI RAATTY 1 cut(s) 289
XceI RCATGY 1 cut(s) 327
XspI CTAG 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.