Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

3862528 .. 3862767

Gene Structure 240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGAAGATGACCGGTTGGCATCCACGCACTCTACAGTGTTCATAGAGTCAGAGGATTTGGAAGGCCAAAGCACAGAAATCGAAGGATATGATTTCAATCAGGGAGTAGACTACCCTCGCCTCGTGAGCTCCATGGTCTTCACCGGCTTCCAAGCCTCCAATCTCGGAGATGCCATTCAAATCGTCAACCAAATGGTAAGTTTCTCTTACCAAACTAACCTAGTTGTCTTTTATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008612 GO:0009058 GO:0009553 GO:0009987 GO:0010467 GO:0016740 GO:0016765 GO:0018193 GO:0018205 GO:0019538 GO:0032501 GO:0032502 GO:0034038 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048229 GO:0048856 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

80

Amino Acids

8.93

Weight (kDa)

4.05

Isoelectric Point (pI)

40.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	108
AgeI	ACCGGT	1 cut(s)	12
AgsI	TTSAA	2 cut(s)	97, 179
AluBI	AGCT	1 cut(s)	129
AluI	AGCT	1 cut(s)	129
Alw21I	GWGCWC	1 cut(s)	131
AoxI	GGCC	1 cut(s)	64
AsiGI	ACCGGT	1 cut(s)	12
AsuHPI	GGTGA	1 cut(s)	133
BanII	GRGCYC	1 cut(s)	131
BauI	CACGAG	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	130
Bbv12I	GWGCWC	1 cut(s)	131
BcgI	CGANNNNNNTGC	2 cut(s)	61, 95
BfaI	CTAG	1 cut(s)	221
BfmI	CTRYAG	1 cut(s)	33
BmsI	GCATC	2 cut(s)	29, 160
BpiI	GAAGAC	1 cut(s)	130
BsaBI	GATNNNNATC	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	132
BsaWI	WCCGGW	1 cut(s)	12
Bse118I	RCCGGY	2 cut(s)	12, 143
Bse8I	GATNNNNATC	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	132
BseGI	GGATG	1 cut(s)	20
BseJI	GATNNNNATC	1 cut(s)	96
BshFI	GGCC	1 cut(s)	66
BshTI	ACCGGT	1 cut(s)	12
BsiHKAI	GWGCWC	1 cut(s)	131
BsiSI	CCGG	2 cut(s)	13, 144
BsnI	GGCC	1 cut(s)	66
Bsp1286I	GDGCHC	1 cut(s)	131
Bsp19I	CCATGG	1 cut(s)	132
BspANI	GGCC	1 cut(s)	66
BsrFI	RCCGGY	2 cut(s)	12, 143
BssAI	RCCGGY	2 cut(s)	12, 143
BssECI	CCNNGG	1 cut(s)	132
BssSI	CACGAG	1 cut(s)	122
BssT1I	CCWWGG	1 cut(s)	132
Bst2BI	CACGAG	1 cut(s)	122
Bst4CI	ACNGT	1 cut(s)	37
BstDSI	CCRYGG	1 cut(s)	132
BstF5I	GGATG	1 cut(s)	20
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstSFI	CTRYAG	1 cut(s)	33
BstV2I	GAAGAC	1 cut(s)	130
BsuRI	GGCC	1 cut(s)	66
BtgI	CCRYGG	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	20
BtsIMutI	CAGTG	1 cut(s)	42
Cfr10I	RCCGGY	2 cut(s)	12, 143
CspAI	ACCGGT	1 cut(s)	12
CviAII	CATG	1 cut(s)	133
CviJI	RGCY	4 cut(s)	66, 129, 147, 155
CviKI_1	RGCY	4 cut(s)	66, 129, 147, 155
Ecl136II	GAGCTC	1 cut(s)	129
Eco130I	CCWWGG	1 cut(s)	132
Eco24I	GRGCYC	1 cut(s)	131
Eco53kI	GAGCTC	1 cut(s)	129
EcoICRI	GAGCTC	1 cut(s)	129
EcoT14I	CCWWGG	1 cut(s)	132
EcoT38I	GRGCYC	1 cut(s)	131
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	1 cut(s)	136
FaiI	YATR	3 cut(s)	44, 90, 134
FalI	AAGNNNNNCTT	2 cut(s)	190, 222
FatI	CATG	1 cut(s)	132
FblI	GTMKAC	1 cut(s)	108
FokI	GGATG	1 cut(s)	7
FriOI	GRGCYC	1 cut(s)	131
FspBI	CTAG	1 cut(s)	221
HaeIII	GGCC	1 cut(s)	66
HapII	CCGG	2 cut(s)	13, 144
Hin1II	CATG	1 cut(s)	136
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	1 cut(s)	47
HpaII	CCGG	2 cut(s)	13, 144
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	2 cut(s)	109, 187
Hpy188I	TCNGA	2 cut(s)	52, 167
Hpy188III	TCNNGA	1 cut(s)	124
Hpy8I	GTNNAC	2 cut(s)	109, 187
HpyAV	CCTTC	2 cut(s)	56, 77
HpyCH4III	ACNGT	1 cut(s)	37
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
Hsp92II	CATG	1 cut(s)	136
LmnI	GCTCC	1 cut(s)	134
LpnPI	CCDG	3 cut(s)	26, 86, 157
LweI	GCATC	2 cut(s)	29, 160
MaeI	CTAG	1 cut(s)	221
MboII	GAAGA	2 cut(s)	17, 130
MhlI	GDGCHC	1 cut(s)	131
MlyI	GAGTC	1 cut(s)	56
MnlI	CCTC	4 cut(s)	46, 126, 131, 166
MspI	CCGG	2 cut(s)	13, 144
MwoI	GCNNNNNNNGC	1 cut(s)	126
NcoI	CCATGG	1 cut(s)	132
NlaIII	CATG	1 cut(s)	136
PinAI	ACCGGT	1 cut(s)	12
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
Psp124BI	GAGCTC	1 cut(s)	131
SacI	GAGCTC	1 cut(s)	131
SchI	GAGTC	1 cut(s)	56
SduI	GDGCHC	1 cut(s)	131
SetI	ASST	2 cut(s)	131, 222
SfaNI	GCATC	2 cut(s)	29, 160
SfcI	CTRYAG	1 cut(s)	33
SspMI	CTAG	1 cut(s)	221
SstI	GAGCTC	1 cut(s)	131
StyI	CCWWGG	1 cut(s)	132
TaaI	ACNGT	1 cut(s)	37
TaqI	TCGA	1 cut(s)	81
TscAI	CASTG	1 cut(s)	42
TspDTI	ATGAA	1 cut(s)	31
TspRI	CASTG	1 cut(s)	42
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.