Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

3862961 .. 3863308

Gene Structure 348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGTGGATGTTGTGGTTTCAACTGCTGGTGGTATAGAGGAGGATCTAGTTAAATGCCTTGCGCCCACTTATAGAGGTGATTTCTCTCTACCGGGAGCACTTTTGCGGTCAAAAGGCTTGAATCGTATTGGTAATTTGCTTGTTCCTAATGACAACTACTGCAAATTTGAGGATTGGATCATACCAATTTTCGACCAGATGTTGAAGGACCAAACTGAAACGTATTGTGGACTCCATCTAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008612 GO:0009058 GO:0009553 GO:0009987 GO:0010467 GO:0016740 GO:0016765 GO:0018193 GO:0018205 GO:0019538 GO:0032501 GO:0032502 GO:0034038 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048229 GO:0048856 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

82

Amino Acids

9.05

Weight (kDa)

4.65

Isoelectric Point (pI)

34.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DS	PF01916	1 - 72	2.2e-25	Deoxyhypusine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	106
AclWI	GGATC	2 cut(s)	51, 185
AcsI	RAATTY	1 cut(s)	164
AgsI	TTSAA	3 cut(s)	21, 121, 205
Alw21I	GWGCWC	1 cut(s)	100
AlwI	GGATC	2 cut(s)	51, 185
ApoI	RAATTY	1 cut(s)	164
AspLEI	GCGC	1 cut(s)	64
AspS9I	GGNCC	1 cut(s)	208
AsuC2I	CCSGG	1 cut(s)	93
AsuHPI	GGTGA	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	208
Bbv12I	GWGCWC	1 cut(s)	100
BccI	CCATC	1 cut(s)	243
BcnI	CCSGG	1 cut(s)	93
BfaI	CTAG	1 cut(s)	47
Bme1390I	CCNGG	1 cut(s)	93
Bme18I	GGWCC	1 cut(s)	208
BmgT120I	GGNCC	1 cut(s)	208
BmrFI	CCNGG	1 cut(s)	93
BpuMI	CCSGG	1 cut(s)	93
BseGI	GGATG	1 cut(s)	13
BseRI	GAGGAG	1 cut(s)	53
BsiHKAI	GWGCWC	1 cut(s)	100
BsiSI	CCGG	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp143I	GATC	2 cut(s)	43, 177
BspACI	CCGC	1 cut(s)	106
BspPI	GGATC	2 cut(s)	51, 185
BssMI	GATC	2 cut(s)	43, 177
BstF5I	GGATG	1 cut(s)	13
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	2 cut(s)	46, 180
BstMBI	GATC	2 cut(s)	43, 177
BstSCI	CCNGG	1 cut(s)	91
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
BtsCI	GGATG	1 cut(s)	13
CfoI	GCGC	1 cut(s)	64
Cfr13I	GGNCC	1 cut(s)	208
CviJI	RGCY	1 cut(s)	117
CviKI_1	RGCY	1 cut(s)	117
DpnI	GATC	2 cut(s)	45, 179
DpnII	GATC	2 cut(s)	43, 177
Eco47I	GGWCC	1 cut(s)	208
FaiI	YATR	3 cut(s)	35, 72, 182
FokI	GGATG	1 cut(s)	20
FspBI	CTAG	1 cut(s)	47
GlaI	GCGC	1 cut(s)	63
HapII	CCGG	1 cut(s)	92
HhaI	GCGC	1 cut(s)	64
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HinfI	GANTC	2 cut(s)	121, 231
HpaII	CCGG	1 cut(s)	92
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	230
Hpy8I	GTNNAC	1 cut(s)	230
HpyAV	CCTTC	1 cut(s)	199
HpyCH4IV	ACGT	1 cut(s)	221
HpyCH4V	TGCA	1 cut(s)	162
HpySE526I	ACGT	1 cut(s)	221
HspAI	GCGC	1 cut(s)	62
Kzo9I	GATC	2 cut(s)	43, 177
LmnI	GCTCC	1 cut(s)	95
LpnPI	CCDG	3 cut(s)	12, 105, 209
MaeI	CTAG	1 cut(s)	47
MaeII	ACGT	1 cut(s)	221
MalI	GATC	2 cut(s)	45, 179
MboI	GATC	2 cut(s)	43, 177
MflI	RGATCY	1 cut(s)	43
MhlI	GDGCHC	1 cut(s)	100
MluCI	AATT	4 cut(s)	133, 164, 186, 241
MlyI	GAGTC	1 cut(s)	225
MnlI	CCTC	4 cut(s)	31, 34, 68, 163
MseI	TTAA	1 cut(s)	51
MspI	CCGG	1 cut(s)	92
MspR9I	CCNGG	1 cut(s)	93
NciI	CCSGG	1 cut(s)	93
NdeII	GATC	2 cut(s)	43, 177
PfeI	GAWTC	1 cut(s)	121
PleI	GAGTC	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	225
PspPI	GGNCC	1 cut(s)	208
PsuI	RGATCY	1 cut(s)	43
SaqAI	TTAA	1 cut(s)	51
Sau3AI	GATC	2 cut(s)	43, 177
Sau96I	GGNCC	1 cut(s)	208
SchI	GAGTC	1 cut(s)	225
ScrFI	CCNGG	1 cut(s)	93
SduI	GDGCHC	1 cut(s)	100
SetI	ASST	2 cut(s)	79, 224
SgeI	CNNG	8 cut(s)	39, 59, 71, 104, 105, 130, 152, 208
SinI	GGWCC	1 cut(s)	208
Sse9I	AATT	4 cut(s)	133, 164, 186, 241
SsiI	CCGC	1 cut(s)	106
SspMI	CTAG	1 cut(s)	47
StyD4I	CCNGG	1 cut(s)	91
TaiI	ACGT	1 cut(s)	224
TaqI	TCGA	1 cut(s)	192
TasI	AATT	4 cut(s)	133, 164, 186, 241
TfiI	GAWTC	1 cut(s)	121
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
VpaK11BI	GGWCC	1 cut(s)	208
XapI	RAATTY	1 cut(s)	164
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.