pycom02g06070

) efflux antiporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Reverse (-)
4078959 .. 4080573
1615 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 543 bp
ATGCACTCTGGTGCTTTAATTTTAGAGATTGTTTTTGCTGAACAATTTCTGTTTGTTGAACCCATTCGCAATTTCTTTGCTGCTCTCTTTCTCGCCAGCATTGGGATGTTAATACATGTTCATTTCCTTTGGAATCATGTTGATATTTTGTTAGCAGCCGTTATATTGGTAATCATTGTAAAAACTGTAGTTGTTGGTAGCGTTGGGATGTCTCTTACGCAAATCGGAGAATTTGCTTTTGTTCTTCTAAGCCGTGCCTCTAATCTTCATCTAGTTGAGTGTAAAGGTGAAATTGGAACCGAAGGTTTATCACTATTGCAGGATGCATGGCCTGTTCAAATGAATATTTATTTTTGTAATCTAATGGTGCAGGTCACTACGCCATTGCTTTTAAAGATAATTCCTGCTGTTGTCCATCTTGAGGTGTTGCTGCGGTGGTTCTCCCTTGATAGCTTGAGCGCGAATGGATTTAAAGGAGATGGTTTTCGCTCAGACAGCGCTAAGCGTCTTGCTATCATGCTCCAGGGATCTCATGATTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0034220 GO:0051179 GO:0051234 GO:0055085 GO:0098655
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_H_Exchanger

Protein Analysis

181

Amino Acids

19.89

Weight (kDa)

5.92

Isoelectric Point (pI)

39.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 541
Acc36I ACCTGC 1 cut(s) 361
AccII CGCG 1 cut(s) 461
AciI CCGC 1 cut(s) 433
AclWI GGATC 1 cut(s) 535
AcsI RAATTY 1 cut(s) 230
AfeI AGCGCT 1 cut(s) 499
AfiI CCNNNNNNNGG 2 cut(s) 102, 421
AflIII ACRYGT 1 cut(s) 115
AgsI TTSAA 2 cut(s) 59, 338
AjnI CCWGG 1 cut(s) 522
AleI CACNNNNGTG 1 cut(s) 9
AluBI AGCT 1 cut(s) 453
AluI AGCT 1 cut(s) 453
Alw26I GTCTC 1 cut(s) 216
AlwI GGATC 1 cut(s) 535
Aor51HI AGCGCT 1 cut(s) 499
AoxI GGCC 1 cut(s) 329
ApeKI GCWGC 3 cut(s) 80, 155, 430
ApoI RAATTY 1 cut(s) 230
Asp700I GAANNNNTTC 2 cut(s) 45, 63
AspLEI GCGC 2 cut(s) 461, 500
AsuHPI GGTGA 1 cut(s) 299
BbvI GCAGC 3 cut(s) 67, 167, 417
BccI CCATC 2 cut(s) 423, 473
BceAI ACGGC 2 cut(s) 143, 237
BciT130I CCWGG 1 cut(s) 524
BcoDI GTCTC 1 cut(s) 216
BfaI CTAG 1 cut(s) 272
BfmI CTRYAG 1 cut(s) 186
BfoI RGCGCY 1 cut(s) 501
BfuAI ACCTGC 1 cut(s) 361
BisI GCNGC 3 cut(s) 81, 156, 431
BlpI GCTNAGC 1 cut(s) 501
BlsI GCNGC 3 cut(s) 82, 157, 432
Bme1390I CCNGG 1 cut(s) 524
BmiI GGNNCC 1 cut(s) 298
BmrFI CCNGG 1 cut(s) 524
BmsI GCATC 1 cut(s) 313
BpmI CTGGAG 1 cut(s) 506
Bpu1102I GCTNAGC 1 cut(s) 501
BpuEI CTTGAG 2 cut(s) 440, 475
BsaJI CCNNGG 1 cut(s) 523
Bsc4I CCNNNNNNNGG 2 cut(s) 102, 421
Bse3DI GCAATG 1 cut(s) 383
BseBI CCWGG 1 cut(s) 524
BseDI CCNNGG 1 cut(s) 523
BseGI GGATG 3 cut(s) 111, 213, 328
BseLI CCNNNNNNNGG 2 cut(s) 102, 421
BseMI GCAATG 1 cut(s) 383
BseMII CTCAG 1 cut(s) 504
BseXI GCAGC 3 cut(s) 67, 167, 417
BsgI GTGCAG 1 cut(s) 389
Bsh1236I CGCG 1 cut(s) 461
BshFI GGCC 1 cut(s) 331
BslI CCNNNNNNNGG 2 cut(s) 102, 421
BsmAI GTCTC 1 cut(s) 216
BsnI GGCC 1 cut(s) 331
Bsp143I GATC 1 cut(s) 527
Bsp1720I GCTNAGC 1 cut(s) 501
BspACI CCGC 1 cut(s) 433
BspANI GGCC 1 cut(s) 331
BspCNI CTCAG 1 cut(s) 503
BspFNI CGCG 1 cut(s) 461
BspHI TCATGA 1 cut(s) 532
BspLI GGNNCC 1 cut(s) 298
BspMI ACCTGC 1 cut(s) 361
BspPI GGATC 1 cut(s) 535
BsrDI GCAATG 1 cut(s) 383
BssECI CCNNGG 1 cut(s) 523
BssMI GATC 1 cut(s) 527
Bst2UI CCWGG 1 cut(s) 524
Bst4CI ACNGT 1 cut(s) 187
BstC8I GCNNGC 1 cut(s) 97
BstDEI CTNAG 3 cut(s) 248, 490, 501
BstF5I GGATG 3 cut(s) 111, 213, 328
BstFNI CGCG 1 cut(s) 461
BstH2I RGCGCY 1 cut(s) 501
BstHHI GCGC 2 cut(s) 461, 500
BstKTI GATC 1 cut(s) 530
BstMAI GTCTC 1 cut(s) 216
BstMBI GATC 1 cut(s) 527
BstMWI GCNNNNNNNGC 1 cut(s) 495
BstNI CCWGG 1 cut(s) 524
BstNSI RCATGY 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 522
BstSFI CTRYAG 1 cut(s) 186
BstUI CGCG 1 cut(s) 461
BstV1I GCAGC 3 cut(s) 67, 167, 417
BstX2I RGATCY 1 cut(s) 527
BstYI RGATCY 1 cut(s) 527
BsuRI GGCC 1 cut(s) 331
BtsCI GGATG 3 cut(s) 111, 213, 328
BveI ACCTGC 1 cut(s) 361
Cac8I GCNNGC 1 cut(s) 97
CciI TCATGA 1 cut(s) 532
CfoI GCGC 2 cut(s) 461, 500
CseI GACGC 1 cut(s) 494
CviAII CATG 5 cut(s) 116, 137, 327, 517, 533
CviJI RGCY 4 cut(s) 158, 252, 331, 453
CviKI_1 RGCY 4 cut(s) 158, 252, 331, 453
DdeI CTNAG 3 cut(s) 248, 490, 501
DpnI GATC 1 cut(s) 529
DpnII GATC 1 cut(s) 527
DraI TTTAAA 2 cut(s) 393, 472
Eco47III AGCGCT 1 cut(s) 499
EcoRII CCWGG 1 cut(s) 522
EcoT22I ATGCAT 1 cut(s) 328
FaeI CATG 5 cut(s) 119, 140, 330, 520, 536
FaiI YATR 7 cut(s) 117, 138, 164, 328, 518, 534, 541
FatI CATG 5 cut(s) 115, 136, 326, 516, 532
Fnu4HI GCNGC 3 cut(s) 81, 156, 431
FokI GGATG 3 cut(s) 118, 220, 335
Fsp4HI GCNGC 3 cut(s) 81, 156, 431
FspBI CTAG 1 cut(s) 272
GlaI GCGC 2 cut(s) 460, 499
GluI GCNGC 3 cut(s) 81, 156, 431
GsuI CTGGAG 1 cut(s) 506
HaeII RGCGCY 1 cut(s) 501
HaeIII GGCC 1 cut(s) 331
HgaI GACGC 1 cut(s) 494
HhaI GCGC 2 cut(s) 461, 500
Hin1II CATG 5 cut(s) 119, 140, 330, 520, 536
Hin6I GCGC 2 cut(s) 459, 498
HinP1I GCGC 2 cut(s) 459, 498
HinfI GANTC 1 cut(s) 133
HphI GGTGA 1 cut(s) 299
Hpy188I TCNGA 2 cut(s) 227, 493
Hpy188III TCNNGA 2 cut(s) 419, 533
HpyAV CCTTC 1 cut(s) 296
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4V TGCA 4 cut(s) 4, 319, 326, 370
HpyF10VI GCNNNNNNNGC 1 cut(s) 495
HpyF3I CTNAG 3 cut(s) 248, 490, 501
Hsp92II CATG 5 cut(s) 119, 140, 330, 520, 536
HspAI GCGC 2 cut(s) 459, 498
Kzo9I GATC 1 cut(s) 527
LmnI GCTCC 1 cut(s) 525
LpnPI CCDG 7 cut(s) 109, 305, 345, 356, 417, 509, 536
Lsp1109I GCAGC 3 cut(s) 67, 167, 417
LweI GCATC 1 cut(s) 313
MaeI CTAG 1 cut(s) 272
MaeIII GTNAC 1 cut(s) 373
MalI GATC 1 cut(s) 529
MboI GATC 1 cut(s) 527
MboII GAAGA 2 cut(s) 236, 257
MflI RGATCY 1 cut(s) 527
MluCI AATT 6 cut(s) 18, 44, 70, 230, 291, 399
MnlI CCTC 2 cut(s) 268, 415
Mph1103I ATGCAT 1 cut(s) 328
MroXI GAANNNNTTC 2 cut(s) 45, 63
MseI TTAA 4 cut(s) 17, 110, 392, 471
MslI CAYNNNNRTG 2 cut(s) 9, 104
MspR9I CCNGG 1 cut(s) 524
MvaI CCWGG 1 cut(s) 524
MvnI CGCG 1 cut(s) 461
MwoI GCNNNNNNNGC 1 cut(s) 495
NdeII GATC 1 cut(s) 527
NlaIII CATG 5 cut(s) 119, 140, 330, 520, 536
NlaIV GGNNCC 1 cut(s) 298
NmuCI GTSAC 1 cut(s) 373
NsiI ATGCAT 1 cut(s) 328
NspI RCATGY 1 cut(s) 119
OliI CACNNNNGTG 1 cut(s) 9
PagI TCATGA 1 cut(s) 532
PciI ACATGT 1 cut(s) 115
PdmI GAANNNNTTC 2 cut(s) 45, 63
PfeI GAWTC 1 cut(s) 133
PkrI GCNGC 3 cut(s) 82, 157, 432
PscI ACATGT 1 cut(s) 115
PsiI TTATAA 1 cut(s) 541
Psp6I CCWGG 1 cut(s) 522
PspGI CCWGG 1 cut(s) 522
PspN4I GGNNCC 1 cut(s) 298
PsuI RGATCY 1 cut(s) 527
RseI CAYNNNNRTG 2 cut(s) 9, 104
SaqAI TTAA 4 cut(s) 17, 110, 392, 471
SatI GCNGC 3 cut(s) 81, 156, 431
Sau3AI GATC 1 cut(s) 527
ScrFI CCNGG 1 cut(s) 524
SetI ASST 5 cut(s) 289, 307, 375, 426, 455
SfaNI GCATC 1 cut(s) 313
SfcI CTRYAG 1 cut(s) 186
SmiMI CAYNNNNRTG 2 cut(s) 9, 104
SmlI CTYRAG 2 cut(s) 419, 454
SmoI CTYRAG 2 cut(s) 419, 454
Sse9I AATT 6 cut(s) 18, 44, 70, 230, 291, 399
SsiI CCGC 1 cut(s) 433
SspI AATATT 1 cut(s) 346
SspMI CTAG 1 cut(s) 272
StyD4I CCNGG 1 cut(s) 522
TaaI ACNGT 1 cut(s) 187
TasI AATT 6 cut(s) 18, 44, 70, 230, 291, 399
TfiI GAWTC 1 cut(s) 133
Tru1I TTAA 4 cut(s) 17, 110, 392, 471
Tru9I TTAA 4 cut(s) 17, 110, 392, 471
TseFI GTSAC 1 cut(s) 373
TseI GCWGC 3 cut(s) 80, 155, 430
Tsp45I GTSAC 1 cut(s) 373
TspDTI ATGAA 3 cut(s) 110, 257, 356
XapI RAATTY 1 cut(s) 230
XceI RCATGY 1 cut(s) 119
XmnI GAANNNNTTC 2 cut(s) 45, 63
XspI CTAG 1 cut(s) 272
Zsp2I ATGCAT 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.