Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

4515586 .. 4516026

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGTGGATCCTGACGTTGGTGGCGGTGGAGACGGCGGTGGGAGGCCTTCCCTGCCATGGCCGTCCAAAACACAGTTGACAGAACCCAGCAAAAATCTAGAAGAAGCTGAGAACGAGCTTGATCGAGCCAAAGAAGAAGTGACTGAACTGAAAAAAGAGGAAAAGGCAGTGACTTTTTCCAAAGGCAGAAACTTTGACCGGTCATCCTCTTCCTCTTCCTCCACCGCTCCGCCGAACCCAGCGGCCGAATTGCTAAAGGTGAAAGAAGAAACTGTAGATGTTGTGGTTGTGGACAGTGACTTAGAGGGTGGATCGATCATTGCAAGACCATCAACGGCGGCGGTGGCGGTGGTGATTTTGGGTCGCTTTCTTCGTCTTCTTCCATGGAGCTGCCTAAACCCATGGAGGGTTTGCGCGAGGCGGGAACACCGCCGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001067 GO:0001666 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0006986 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0034620 GO:0035966 GO:0035967 GO:0036293 GO:0036294 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070482 GO:0070887 GO:0071310 GO:0071453 GO:0071456 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

147

Amino Acids

15.85

Weight (kDa)

5.57

Isoelectric Point (pI)

62.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	227
AccII	CGCG	1 cut(s)	416
AclWI	GGATC	3 cut(s)	2, 15, 319
AcoI	YGGCCR	2 cut(s)	59, 243
AfiI	CCNNNNNNNGG	3 cut(s)	17, 57, 406
AgeI	ACCGGT	1 cut(s)	198
AluBI	AGCT	3 cut(s)	107, 118, 390
AluI	AGCT	3 cut(s)	107, 118, 390
Alw26I	GTCTC	1 cut(s)	24
AlwI	GGATC	3 cut(s)	2, 15, 319
AoxI	GGCC	3 cut(s)	44, 59, 243
ApeKI	GCWGC	1 cut(s)	390
AsiGI	ACCGGT	1 cut(s)	198
AspLEI	GCGC	1 cut(s)	416
AsuHPI	GGTGA	2 cut(s)	271, 364
BamHI	GGATCC	1 cut(s)	7
BbsI	GAAGAC	1 cut(s)	368
BbvI	GCAGC	1 cut(s)	377
BccI	CCATC	1 cut(s)	337
BceAI	ACGGC	4 cut(s)	46, 49, 351, 417
BcoDI	GTCTC	1 cut(s)	24
BfaI	CTAG	1 cut(s)	98
BfmI	CTRYAG	1 cut(s)	273
BisI	GCNGC	3 cut(s)	243, 339, 391
BlsI	GCNGC	3 cut(s)	244, 340, 392
BmiI	GGNNCC	1 cut(s)	9
BpiI	GAAGAC	1 cut(s)	368
Bsa29I	ATCGAT	1 cut(s)	314
BsaJI	CCNNGG	3 cut(s)	56, 383, 401
BsaWI	WCCGGW	1 cut(s)	198
Bsc4I	CCNNNNNNNGG	3 cut(s)	17, 57, 406
Bse118I	RCCGGY	1 cut(s)	198
Bse3DI	GCAATG	1 cut(s)	318
BseCI	ATCGAT	1 cut(s)	314
BseDI	CCNNGG	3 cut(s)	56, 383, 401
BseGI	GGATG	1 cut(s)	203
BseLI	CCNNNNNNNGG	3 cut(s)	17, 57, 406
BseMI	GCAATG	1 cut(s)	318
BseMII	CTCAG	1 cut(s)	99
BseX3I	CGGCCG	1 cut(s)	243
BseXI	GCAGC	1 cut(s)	377
BseYI	CCCAGC	2 cut(s)	86, 238
Bsh1236I	CGCG	1 cut(s)	416
Bsh1285I	CGRYCG	1 cut(s)	246
BshFI	GGCC	3 cut(s)	46, 61, 245
BshTI	ACCGGT	1 cut(s)	198
BshVI	ATCGAT	1 cut(s)	314
BsiEI	CGRYCG	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	199
BslI	CCNNNNNNNGG	3 cut(s)	17, 57, 406
BsmAI	GTCTC	1 cut(s)	24
BsmBI	CGTCTC	1 cut(s)	24
BsnI	GGCC	3 cut(s)	46, 61, 245
Bsp143I	GATC	4 cut(s)	7, 121, 311, 315
Bsp19I	CCATGG	3 cut(s)	56, 383, 401
BspANI	GGCC	3 cut(s)	46, 61, 245
BspCNI	CTCAG	1 cut(s)	100
BspDI	ATCGAT	1 cut(s)	314
BspFNI	CGCG	1 cut(s)	416
BspLI	GGNNCC	1 cut(s)	9
BspPI	GGATC	3 cut(s)	2, 15, 319
BsrBI	CCGCTC	1 cut(s)	227
BsrDI	GCAATG	1 cut(s)	318
BsrFI	RCCGGY	1 cut(s)	198
BssAI	RCCGGY	1 cut(s)	198
BssECI	CCNNGG	3 cut(s)	56, 383, 401
BssMI	GATC	4 cut(s)	7, 121, 311, 315
BssT1I	CCWWGG	3 cut(s)	56, 383, 401
Bst4CI	ACNGT	3 cut(s)	75, 274, 296
Bst6I	CTCTTC	2 cut(s)	214, 220
BstDEI	CTNAG	2 cut(s)	108, 301
BstDSI	CCRYGG	3 cut(s)	56, 383, 401
BstF5I	GGATG	1 cut(s)	203
BstFNI	CGCG	1 cut(s)	416
BstHHI	GCGC	1 cut(s)	416
BstKTI	GATC	4 cut(s)	10, 124, 314, 318
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	4 cut(s)	7, 121, 311, 315
BstMCI	CGRYCG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	2 cut(s)	52, 344
BstSFI	CTRYAG	1 cut(s)	273
BstUI	CGCG	1 cut(s)	416
BstV1I	GCAGC	1 cut(s)	377
BstV2I	GAAGAC	1 cut(s)	368
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BstZI	CGGCCG	1 cut(s)	243
Bsu15I	ATCGAT	1 cut(s)	314
BsuRI	GGCC	3 cut(s)	46, 61, 245
BsuTUI	ATCGAT	1 cut(s)	314
BtgI	CCRYGG	3 cut(s)	56, 383, 401
BtsCI	GGATG	1 cut(s)	203
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	2 cut(s)	174, 301
CfoI	GCGC	1 cut(s)	416
Cfr10I	RCCGGY	1 cut(s)	198
ClaI	ATCGAT	1 cut(s)	314
CspAI	ACCGGT	1 cut(s)	198
CviAII	CATG	3 cut(s)	57, 384, 402
CviJI	RGCY	7 cut(s)	46, 61, 107, 118, 128, 245, 390
CviKI_1	RGCY	7 cut(s)	46, 61, 107, 118, 128, 245, 390
DdeI	CTNAG	2 cut(s)	108, 301
DpnI	GATC	4 cut(s)	9, 123, 313, 317
DpnII	GATC	4 cut(s)	7, 121, 311, 315
EaeI	YGGCCR	2 cut(s)	59, 243
EagI	CGGCCG	1 cut(s)	243
Eam1104I	CTCTTC	2 cut(s)	214, 220
EarI	CTCTTC	2 cut(s)	214, 220
EciI	GGCGGA	1 cut(s)	219
EclXI	CGGCCG	1 cut(s)	243
Eco130I	CCWWGG	3 cut(s)	56, 383, 401
Eco147I	AGGCCT	1 cut(s)	46
Eco52I	CGGCCG	1 cut(s)	243
EcoT14I	CCWWGG	3 cut(s)	56, 383, 401
ErhI	CCWWGG	3 cut(s)	56, 383, 401
Esp3I	CGTCTC	1 cut(s)	24
FaeI	CATG	3 cut(s)	60, 387, 405
FaiI	YATR	3 cut(s)	58, 385, 403
FatI	CATG	3 cut(s)	56, 383, 401
FauI	CCCGC	1 cut(s)	414
Fnu4HI	GCNGC	3 cut(s)	243, 339, 391
FokI	GGATG	1 cut(s)	190
Fsp4HI	GCNGC	3 cut(s)	243, 339, 391
FspBI	CTAG	1 cut(s)	98
GlaI	GCGC	1 cut(s)	415
GluI	GCNGC	3 cut(s)	243, 339, 391
GsaI	CCCAGC	2 cut(s)	90, 242
HaeIII	GGCC	3 cut(s)	46, 61, 245
HapII	CCGG	1 cut(s)	199
HhaI	GCGC	1 cut(s)	416
Hin1II	CATG	3 cut(s)	60, 387, 405
Hin6I	GCGC	1 cut(s)	414
HinP1I	GCGC	1 cut(s)	414
HincII	GTYRAC	1 cut(s)	78
HindII	GTYRAC	1 cut(s)	78
HpaII	CCGG	1 cut(s)	199
HphI	GGTGA	2 cut(s)	271, 364
Hpy166II	GTNNAC	2 cut(s)	78, 292
Hpy188III	TCNNGA	3 cut(s)	11, 98, 438
Hpy8I	GTNNAC	2 cut(s)	78, 292
HpyAV	CCTTC	1 cut(s)	57
HpyCH4III	ACNGT	3 cut(s)	75, 274, 296
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	1 cut(s)	323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	52, 344
HpyF3I	CTNAG	2 cut(s)	108, 301
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	3 cut(s)	60, 387, 405
HspAI	GCGC	1 cut(s)	414
Kzo9I	GATC	4 cut(s)	7, 121, 311, 315
LmnI	GCTCC	2 cut(s)	232, 387
LpnPI	CCDG	5 cut(s)	24, 65, 100, 212, 252
Lsp1109I	GCAGC	1 cut(s)	377
MaeI	CTAG	1 cut(s)	98
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	3 cut(s)	139, 169, 296
MalI	GATC	4 cut(s)	9, 123, 313, 317
MbiI	CCGCTC	1 cut(s)	227
MboI	GATC	4 cut(s)	7, 121, 311, 315
MboII	GAAGA	8 cut(s)	113, 146, 201, 207, 278, 362, 368, 371
MflI	RGATCY	1 cut(s)	7
MluCI	AATT	1 cut(s)	248
MnlI	CCTC	8 cut(s)	36, 151, 217, 223, 229, 298, 399, 411
MspA1I	CMGCKG	1 cut(s)	242
MspI	CCGG	1 cut(s)	199
MvnI	CGCG	1 cut(s)	416
MwoI	GCNNNNNNNGC	2 cut(s)	52, 344
NcoI	CCATGG	3 cut(s)	56, 383, 401
NdeII	GATC	4 cut(s)	7, 121, 311, 315
NlaIII	CATG	3 cut(s)	60, 387, 405
NlaIV	GGNNCC	1 cut(s)	9
NmuCI	GTSAC	3 cut(s)	139, 169, 296
PceI	AGGCCT	1 cut(s)	46
PcsI	WCGNNNNNNNCGW	1 cut(s)	370
PinAI	ACCGGT	1 cut(s)	198
PkrI	GCNGC	3 cut(s)	244, 340, 392
PspFI	CCCAGC	2 cut(s)	86, 238
PspN4I	GGNNCC	1 cut(s)	9
PsuI	RGATCY	1 cut(s)	7
SatI	GCNGC	3 cut(s)	243, 339, 391
Sau3AI	GATC	4 cut(s)	7, 121, 311, 315
SetI	ASST	5 cut(s)	18, 109, 120, 261, 392
SfcI	CTRYAG	1 cut(s)	273
Sse9I	AATT	1 cut(s)	248
SseBI	AGGCCT	1 cut(s)	46
SspMI	CTAG	1 cut(s)	98
StuI	AGGCCT	1 cut(s)	46
StyI	CCWWGG	3 cut(s)	56, 383, 401
TaaI	ACNGT	3 cut(s)	75, 274, 296
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	2 cut(s)	124, 314
TasI	AATT	1 cut(s)	248
TauI	GCSGC	2 cut(s)	245, 341
TscAI	CASTG	2 cut(s)	174, 301
TseFI	GTSAC	3 cut(s)	139, 169, 296
TseI	GCWGC	1 cut(s)	390
Tsp45I	GTSAC	3 cut(s)	139, 169, 296
TspRI	CASTG	2 cut(s)	174, 301
XbaI	TCTAGA	1 cut(s)	97
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.