Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

4613618 .. 4614242

Gene Structure 625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGTTATGGGTATAATTGTTTATCCTTACCCATTTAATTTAATATATGTAAAATTTAAAAATCCTAAATTTTCCTCTGCCAGACTCAGAGTCTCAAACGCCCCGTCCCCCGCTCATCTCTCCCTCCTCGCTGTGGACTTCGAAGAAGCTCAGGAGCAGATTTTCTCACCTACTTTGCTAATGGACTCATCACTATTGGCAGATTATGAGGACTTACTTGGTATGTTTTTCTGGTCACCAACTAGTTCTGTTATATTGGCTTTTATACGTAGACGCTTCCAAGTATATGGTCATCTGTACTGGTTCAGCACTAGGTTTTCTACCTTTCATTCACCACATGACCTATATCATACGCGCAAGATTGCCTTTATCGTTAAAACATGTAGACGGGTGAAAAAAGGTAAATGGGTAAAAAAAATGATAAACGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009524 GO:0009553 GO:0009555 GO:0009561 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0032501 GO:0032502 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:0051011 GO:0055046 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS6_N

Protein Analysis

144

Amino Acids

16.75

Weight (kDa)

9.95

Isoelectric Point (pI)

45.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	113
AccI	GTMKAC	2 cut(s)	271, 385
AccII	CGCG	1 cut(s)	355
AciI	CCGC	1 cut(s)	111
AcsI	RAATTY	2 cut(s)	53, 68
AfaI	GTAC	1 cut(s)	299
AfiI	CCNNNNNNNGG	1 cut(s)	133
AflIII	ACRYGT	1 cut(s)	380
AhdI	GACNNNNNGTC	1 cut(s)	89
AhlI	ACTAGT	1 cut(s)	242
AluBI	AGCT	1 cut(s)	149
AluI	AGCT	1 cut(s)	149
Alw26I	GTCTC	1 cut(s)	97
ApoI	RAATTY	2 cut(s)	53, 68
ArsI	GACNNNNNNTTYG	2 cut(s)	89, 121
AspLEI	GCGC	1 cut(s)	357
AsuHPI	GGTGA	4 cut(s)	159, 228, 324, 403
AsuII	TTCGAA	1 cut(s)	141
BcoDI	GTCTC	1 cut(s)	97
BcuI	ACTAGT	1 cut(s)	242
BfaI	CTAG	2 cut(s)	243, 312
BmeRI	GACNNNNNGTC	1 cut(s)	89
Bpu10I	CCTNAGC	1 cut(s)	150
Bpu14I	TTCGAA	1 cut(s)	141
BsaAI	YACGTR	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	305
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMII	CTCAG	2 cut(s)	100, 164
BseNI	ACTGG	1 cut(s)	305
BseRI	GAGGAG	1 cut(s)	116
Bsh1236I	CGCG	1 cut(s)	355
BslFI	GGGAC	1 cut(s)	91
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	1 cut(s)	97
BsmFI	GGGAC	1 cut(s)	91
Bsp119I	TTCGAA	1 cut(s)	141
BspACI	CCGC	1 cut(s)	111
BspCNI	CTCAG	2 cut(s)	99, 163
BspFNI	CGCG	1 cut(s)	355
BspT104I	TTCGAA	1 cut(s)	141
BsrBI	CCGCTC	1 cut(s)	113
BsrI	ACTGG	1 cut(s)	305
BstBAI	YACGTR	1 cut(s)	269
BstBI	TTCGAA	1 cut(s)	141
BstDEI	CTNAG	2 cut(s)	86, 150
BstEII	GGTNACC	1 cut(s)	234
BstFNI	CGCG	1 cut(s)	355
BstHHI	GCGC	1 cut(s)	357
BstMAI	GTCTC	1 cut(s)	97
BstNSI	RCATGY	1 cut(s)	384
BstPI	GGTNACC	1 cut(s)	234
BstSNI	TACGTA	1 cut(s)	269
BstUI	CGCG	1 cut(s)	355
BstXI	CCANNNNNNTGG	1 cut(s)	287
CfoI	GCGC	1 cut(s)	357
CseI	GACGC	1 cut(s)	282
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	2 cut(s)	338, 381
CviJI	RGCY	2 cut(s)	149, 260
CviKI_1	RGCY	2 cut(s)	149, 260
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	2 cut(s)	86, 150
DraI	TTTAAA	1 cut(s)	58
DriI	GACNNNNNGTC	1 cut(s)	89
Eam1105I	GACNNNNNGTC	1 cut(s)	89
Eco105I	TACGTA	1 cut(s)	269
Eco91I	GGTNACC	1 cut(s)	234
EcoO65I	GGTNACC	1 cut(s)	234
FaeI	CATG	2 cut(s)	341, 384
FalI	AAGNNNNNCTT	2 cut(s)	350, 382
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	2 cut(s)	337, 380
FauI	CCCGC	1 cut(s)	118
FblI	GTMKAC	2 cut(s)	271, 385
FspBI	CTAG	2 cut(s)	243, 312
GlaI	GCGC	1 cut(s)	356
HgaI	GACGC	1 cut(s)	282
HhaI	GCGC	1 cut(s)	357
Hin1II	CATG	2 cut(s)	341, 384
Hin6I	GCGC	1 cut(s)	355
HinP1I	GCGC	1 cut(s)	355
HinfI	GANTC	3 cut(s)	84, 90, 185
HphI	GGTGA	4 cut(s)	159, 228, 324, 403
Hpy166II	GTNNAC	3 cut(s)	136, 272, 386
Hpy188I	TCNGA	1 cut(s)	89
Hpy188III	TCNNGA	1 cut(s)	152
Hpy8I	GTNNAC	3 cut(s)	136, 272, 386
HpyCH4IV	ACGT	1 cut(s)	268
HpyF3I	CTNAG	2 cut(s)	86, 150
HpySE526I	ACGT	1 cut(s)	268
Hsp92II	CATG	2 cut(s)	341, 384
HspAI	GCGC	1 cut(s)	355
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	4 cut(s)	94, 137, 217, 286
MaeI	CTAG	2 cut(s)	243, 312
MaeII	ACGT	1 cut(s)	268
MaeIII	GTNAC	1 cut(s)	234
MbiI	CCGCTC	1 cut(s)	113
MboII	GAAGA	1 cut(s)	155
MluCI	AATT	4 cut(s)	15, 37, 53, 68
MlyI	GAGTC	3 cut(s)	78, 99, 179
MnlI	CCTC	4 cut(s)	85, 134, 137, 202
MseI	TTAA	4 cut(s)	36, 41, 57, 375
MvnI	CGCG	1 cut(s)	355
NlaIII	CATG	2 cut(s)	341, 384
NmuCI	GTSAC	1 cut(s)	234
NspI	RCATGY	1 cut(s)	384
NspV	TTCGAA	1 cut(s)	141
PciI	ACATGT	1 cut(s)	380
PleI	GAGTC	3 cut(s)	78, 98, 179
PpsI	GAGTC	3 cut(s)	78, 98, 179
Ppu21I	YACGTR	1 cut(s)	269
PscI	ACATGT	1 cut(s)	380
PspEI	GGTNACC	1 cut(s)	234
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
SaqAI	TTAA	4 cut(s)	36, 41, 57, 375
SchI	GAGTC	3 cut(s)	78, 99, 179
SetI	ASST	7 cut(s)	151, 172, 271, 317, 326, 345, 403
SfuI	TTCGAA	1 cut(s)	141
SnaBI	TACGTA	1 cut(s)	269
SpeI	ACTAGT	1 cut(s)	242
Sse9I	AATT	4 cut(s)	15, 37, 53, 68
SsiI	CCGC	1 cut(s)	111
SspMI	CTAG	2 cut(s)	243, 312
TaiI	ACGT	1 cut(s)	271
TaqI	TCGA	1 cut(s)	141
TasI	AATT	4 cut(s)	15, 37, 53, 68
TatI	WGTACW	1 cut(s)	297
Tru1I	TTAA	4 cut(s)	36, 41, 57, 375
Tru9I	TTAA	4 cut(s)	36, 41, 57, 375
TseFI	GTSAC	1 cut(s)	234
Tsp45I	GTSAC	1 cut(s)	234
TspDTI	ATGAA	1 cut(s)	317
XapI	RAATTY	2 cut(s)	53, 68
XceI	RCATGY	1 cut(s)	384
XmiI	GTMKAC	2 cut(s)	271, 385
XspI	CTAG	2 cut(s)	243, 312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.