Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

4614290 .. 4615354

Gene Structure 1065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGCAATTACCCAATGAGCCAACGTTACCCGCCCTCTATAACCGTTGCACATCCCTAGTTGCCCCTTATTTGGGTGGTCAACAATCACCAGTTAACGAAGGGCGTGTTAAGGCCCGACGTCATTCAACTCGTGTTTCAAACTCGAGTGCAGGATCGAGGCTTGATATTGAGGGGCTGGGTTTCCTAACTCATTGTGGTTGGAGTTCTTTTGTCGAGACGCTAAGGTTCGGGCGGGTTTTGATTTTGTTTTCAGGTGTGAATTCGGACCAAGGGTTGATCGCGAGATTAATTGAGATGGGTCATTTACGAGAAATTTTTCAATGTAACCGATACACGAAGTGGTACATCACGTGTCACTATACAAATGATGAGATATGTCACTTATATAAAAACACATTATGTATCTCTCGTGTTTCGATCACAATAAAAAATTTCTCATCATTCACGGGTGACCTGGTAGCCGAGGTGACTAGGCGAGTGATGGTGGAGAAAGAAGGTGAGTCAATAAGGTCAAATTTGAACAACACGTGCGTAGACGAGTTCACTCGGGTCCTTAAAACCTGGCCCGCTTTGACCTTATTAAGAGCAACTCCAACGTTGGAGCCCTCCCCCCTGGCAATACACTATTCAATCCACCTAATGAACAAATTTGCATCTCCACCGTTACACTTCAATAGCCCTGGCAATAGAATTTTAATTGTAATATCGGATAAGATTTTTAATCGTTCTCGTTGCGCCACGTGTCATTATCCGGAACCTAATCATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

257

Amino Acids

29.03

Weight (kDa)

9.12

Isoelectric Point (pI)

55.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	121
AccI	GTMKAC	1 cut(s)	534
AccII	CGCG	1 cut(s)	281
AccIII	TCCGGA	1 cut(s)	751
AciI	CCGC	3 cut(s)	30, 232, 567
AclI	AACGTT	2 cut(s)	23, 596
AclWI	GGATC	1 cut(s)	160
AcsI	RAATTY	6 cut(s)	259, 312, 430, 514, 647, 690
AcvI	CACGTG	3 cut(s)	351, 528, 741
AcyI	GRCGYC	1 cut(s)	118
AdeI	CACNNNGTG	1 cut(s)	339
AfaI	GTAC	1 cut(s)	344
AfiI	CCNNNNNNNGG	2 cut(s)	70, 71
AflIII	ACRYGT	3 cut(s)	350, 525, 740
AgsI	TTSAA	6 cut(s)	126, 138, 320, 520, 630, 673
AjnI	CCWGG	4 cut(s)	453, 560, 612, 679
Alw26I	GTCTC	1 cut(s)	209
AlwI	GGATC	1 cut(s)	160
Ama87I	CYCGRG	2 cut(s)	142, 546
Aor13HI	TCCGGA	1 cut(s)	751
AoxI	GGCC	2 cut(s)	111, 563
ApoI	RAATTY	6 cut(s)	259, 312, 430, 514, 647, 690
AseI	ATTAAT	1 cut(s)	287
Asp700I	GAANNNNTTC	1 cut(s)	315
AspLEI	GCGC	1 cut(s)	737
AspS9I	GGNCC	4 cut(s)	112, 265, 550, 564
AsuHPI	GGTGA	4 cut(s)	78, 461, 478, 509
AvaI	CYCGRG	2 cut(s)	142, 546
AvaII	GGWCC	2 cut(s)	265, 550
BanII	GRGCYC	1 cut(s)	606
BauI	CACGAG	2 cut(s)	129, 408
BbrPI	CACGTG	3 cut(s)	351, 528, 741
BccI	CCATC	2 cut(s)	289, 475
BciT130I	CCWGG	4 cut(s)	455, 562, 614, 681
BcoDI	GTCTC	1 cut(s)	209
BfaI	CTAG	2 cut(s)	56, 471
Bme1390I	CCNGG	4 cut(s)	455, 562, 614, 681
Bme18I	GGWCC	2 cut(s)	265, 550
BmeT110I	CYCGRG	2 cut(s)	142, 546
BmgT120I	GGNCC	4 cut(s)	112, 265, 550, 564
BmiI	GGNNCC	3 cut(s)	551, 603, 756
BmrFI	CCNGG	4 cut(s)	455, 562, 614, 681
BmsI	GCATC	1 cut(s)	662
Bpu10I	CCTNAGC	1 cut(s)	221
BsaAI	YACGTR	3 cut(s)	351, 528, 741
BsaHI	GRCGYC	1 cut(s)	118
BsaJI	CCNNGG	4 cut(s)	268, 462, 612, 679
BsaWI	WCCGGW	1 cut(s)	751
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 71
Bse1I	ACTGG	1 cut(s)	89
BseAI	TCCGGA	1 cut(s)	751
BseBI	CCWGG	4 cut(s)	455, 562, 614, 681
BseDI	CCNNGG	4 cut(s)	268, 462, 612, 679
BseGI	GGATG	1 cut(s)	50
BseLI	CCNNNNNNNGG	2 cut(s)	70, 71
BseNI	ACTGG	1 cut(s)	89
BseYI	CCCAGC	1 cut(s)	175
BsgI	GTGCAG	1 cut(s)	168
Bsh1236I	CGCG	1 cut(s)	281
BshFI	GGCC	2 cut(s)	113, 565
BsiHKCI	CYCGRG	2 cut(s)	142, 546
BsiSI	CCGG	1 cut(s)	752
BslI	CCNNNNNNNGG	2 cut(s)	70, 71
BsmAI	GTCTC	1 cut(s)	209
BsmBI	CGTCTC	1 cut(s)	209
BsnI	GGCC	2 cut(s)	113, 565
BsoBI	CYCGRG	2 cut(s)	142, 546
Bsp1286I	GDGCHC	1 cut(s)	606
Bsp13I	TCCGGA	1 cut(s)	751
Bsp143I	GATC	3 cut(s)	152, 276, 417
Bsp68I	TCGCGA	1 cut(s)	281
BspACI	CCGC	3 cut(s)	30, 232, 567
BspANI	GGCC	2 cut(s)	113, 565
BspEI	TCCGGA	1 cut(s)	751
BspFNI	CGCG	1 cut(s)	281
BspLI	GGNNCC	3 cut(s)	551, 603, 756
BspPI	GGATC	1 cut(s)	160
BsrI	ACTGG	1 cut(s)	89
BssECI	CCNNGG	4 cut(s)	268, 462, 612, 679
BssMI	GATC	3 cut(s)	152, 276, 417
BssNI	GRCGYC	1 cut(s)	118
BssSI	CACGAG	2 cut(s)	129, 408
BssT1I	CCWWGG	1 cut(s)	268
Bst2BI	CACGAG	2 cut(s)	129, 408
Bst2UI	CCWGG	4 cut(s)	455, 562, 614, 681
Bst4CI	ACNGT	2 cut(s)	44, 663
BstACI	GRCGYC	1 cut(s)	118
BstBAI	YACGTR	3 cut(s)	351, 528, 741
BstC8I	GCNNGC	1 cut(s)	567
BstDEI	CTNAG	1 cut(s)	221
BstEII	GGTNACC	1 cut(s)	449
BstF5I	GGATG	1 cut(s)	50
BstFNI	CGCG	1 cut(s)	281
BstHHI	GCGC	1 cut(s)	737
BstKTI	GATC	3 cut(s)	155, 279, 420
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	3 cut(s)	152, 276, 417
BstNI	CCWGG	4 cut(s)	455, 562, 614, 681
BstPI	GGTNACC	1 cut(s)	449
BstSCI	CCNGG	4 cut(s)	453, 560, 612, 679
BstUI	CGCG	1 cut(s)	281
BsuRI	GGCC	2 cut(s)	113, 565
BtsCI	GGATG	1 cut(s)	50
BtuMI	TCGCGA	1 cut(s)	281
Cac8I	GCNNGC	1 cut(s)	567
CfoI	GCGC	1 cut(s)	737
Cfr13I	GGNCC	4 cut(s)	112, 265, 550, 564
CseI	GACGC	1 cut(s)	226
CsiI	ACCWGGT	1 cut(s)	453
Csp6I	GTAC	1 cut(s)	343
CviJI	RGCY	8 cut(s)	19, 113, 160, 175, 461, 565, 604, 678
CviKI_1	RGCY	8 cut(s)	19, 113, 160, 175, 461, 565, 604, 678
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	1 cut(s)	221
DpnI	GATC	3 cut(s)	154, 278, 419
DpnII	GATC	3 cut(s)	152, 276, 417
DraIII	CACNNNGTG	1 cut(s)	339
Eco130I	CCWWGG	1 cut(s)	268
Eco24I	GRGCYC	1 cut(s)	606
Eco47I	GGWCC	2 cut(s)	265, 550
Eco72I	CACGTG	3 cut(s)	351, 528, 741
Eco88I	CYCGRG	2 cut(s)	142, 546
Eco91I	GGTNACC	1 cut(s)	449
EcoO109I	RGGNCCY	1 cut(s)	550
EcoO65I	GGTNACC	1 cut(s)	449
EcoRI	GAATTC	1 cut(s)	259
EcoRII	CCWGG	4 cut(s)	453, 560, 612, 679
EcoT14I	CCWWGG	1 cut(s)	268
EcoT38I	GRGCYC	1 cut(s)	606
ErhI	CCWWGG	1 cut(s)	268
Esp3I	CGTCTC	1 cut(s)	209
FaiI	YATR	6 cut(s)	39, 360, 376, 385, 387, 400
FauI	CCCGC	3 cut(s)	37, 225, 574
FblI	GTMKAC	1 cut(s)	534
FokI	GGATG	1 cut(s)	37
FriOI	GRGCYC	1 cut(s)	606
FspBI	CTAG	2 cut(s)	56, 471
GlaI	GCGC	1 cut(s)	736
GsaI	CCCAGC	1 cut(s)	179
HaeIII	GGCC	2 cut(s)	113, 565
HapII	CCGG	1 cut(s)	752
HgaI	GACGC	1 cut(s)	226
HhaI	GCGC	1 cut(s)	737
Hin1I	GRCGYC	1 cut(s)	118
Hin6I	GCGC	1 cut(s)	735
HinP1I	GCGC	1 cut(s)	735
HincII	GTYRAC	2 cut(s)	80, 94
HindII	GTYRAC	2 cut(s)	80, 94
HinfI	GANTC	1 cut(s)	500
HpaI	GTTAAC	1 cut(s)	94
HpaII	CCGG	1 cut(s)	752
HphI	GGTGA	4 cut(s)	78, 461, 478, 509
Hpy166II	GTNNAC	4 cut(s)	80, 94, 535, 543
Hpy188I	TCNGA	3 cut(s)	265, 709, 770
Hpy188III	TCNNGA	3 cut(s)	214, 280, 752
Hpy8I	GTNNAC	4 cut(s)	80, 94, 535, 543
Hpy99I	CGWCG	1 cut(s)	120
HpyAV	CCTTC	2 cut(s)	92, 488
HpyCH4III	ACNGT	2 cut(s)	44, 663
HpyCH4IV	ACGT	6 cut(s)	23, 118, 350, 527, 596, 740
HpyCH4V	TGCA	4 cut(s)	4, 48, 149, 653
HpyF3I	CTNAG	1 cut(s)	221
HpySE526I	ACGT	6 cut(s)	23, 118, 350, 527, 596, 740
Hsp92I	GRCGYC	1 cut(s)	118
HspAI	GCGC	1 cut(s)	735
Kpn2I	TCCGGA	1 cut(s)	751
KspAI	GTTAAC	1 cut(s)	94
Kzo9I	GATC	3 cut(s)	152, 276, 417
LmnI	GCTCC	1 cut(s)	601
LweI	GCATC	1 cut(s)	662
MabI	ACCWGGT	1 cut(s)	453
MaeI	CTAG	2 cut(s)	56, 471
MaeII	ACGT	6 cut(s)	23, 118, 350, 527, 596, 740
MaeIII	GTNAC	7 cut(s)	24, 323, 353, 377, 449, 466, 663
MalI	GATC	3 cut(s)	154, 278, 419
MboI	GATC	3 cut(s)	152, 276, 417
MhlI	GDGCHC	1 cut(s)	606
MluCI	AATT	9 cut(s)	5, 259, 288, 312, 430, 514, 647, 690, 696
MlyI	GAGTC	1 cut(s)	509
MmeI	TCCRAC	3 cut(s)	179, 579, 617
MnlI	CCTC	5 cut(s)	44, 150, 163, 457, 616
MroI	TCCGGA	1 cut(s)	751
MroXI	GAANNNNTTC	1 cut(s)	315
MseI	TTAA	7 cut(s)	93, 108, 287, 555, 581, 695, 720
MspI	CCGG	1 cut(s)	752
MspR9I	CCNGG	4 cut(s)	455, 562, 614, 681
MvaI	CCWGG	4 cut(s)	455, 562, 614, 681
MvnI	CGCG	1 cut(s)	281
NdeII	GATC	3 cut(s)	152, 276, 417
NlaIV	GGNNCC	3 cut(s)	551, 603, 756
NmeAIII	GCCGAG	1 cut(s)	487
NmuCI	GTSAC	4 cut(s)	353, 377, 449, 466
NruI	TCGCGA	1 cut(s)	281
PaeR7I	CTCGAG	1 cut(s)	142
PdmI	GAANNNNTTC	1 cut(s)	315
PleI	GAGTC	1 cut(s)	508
PmaCI	CACGTG	3 cut(s)	351, 528, 741
PmlI	CACGTG	3 cut(s)	351, 528, 741
PpsI	GAGTC	1 cut(s)	508
Ppu21I	YACGTR	3 cut(s)	351, 528, 741
PpuMI	RGGWCCY	1 cut(s)	550
PshBI	ATTAAT	1 cut(s)	287
Psp1406I	AACGTT	2 cut(s)	23, 596
Psp5II	RGGWCCY	1 cut(s)	550
Psp6I	CCWGG	4 cut(s)	453, 560, 612, 679
PspCI	CACGTG	3 cut(s)	351, 528, 741
PspEI	GGTNACC	1 cut(s)	449
PspFI	CCCAGC	1 cut(s)	175
PspGI	CCWGG	4 cut(s)	453, 560, 612, 679
PspN4I	GGNNCC	3 cut(s)	551, 603, 756
PspPI	GGNCC	4 cut(s)	112, 265, 550, 564
PspPPI	RGGWCCY	1 cut(s)	550
PspXI	VCTCGAGB	1 cut(s)	142
RruI	TCGCGA	1 cut(s)	281
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
SaqAI	TTAA	7 cut(s)	93, 108, 287, 555, 581, 695, 720
Sau3AI	GATC	3 cut(s)	152, 276, 417
Sau96I	GGNCC	4 cut(s)	112, 265, 550, 564
SchI	GAGTC	1 cut(s)	509
ScrFI	CCNGG	4 cut(s)	455, 562, 614, 681
SduI	GDGCHC	1 cut(s)	606
SexAI	ACCWGGT	1 cut(s)	453
SfaNI	GCATC	1 cut(s)	662
Sfr274I	CTCGAG	1 cut(s)	142
SinI	GGWCC	2 cut(s)	265, 550
SlaI	CTCGAG	1 cut(s)	142
SmlI	CTYRAG	1 cut(s)	142
SmoI	CTYRAG	1 cut(s)	142
Sse9I	AATT	9 cut(s)	5, 259, 288, 312, 430, 514, 647, 690, 696
SsiI	CCGC	3 cut(s)	30, 232, 567
SspMI	CTAG	2 cut(s)	56, 471
StyD4I	CCNGG	4 cut(s)	453, 560, 612, 679
StyI	CCWWGG	1 cut(s)	268
TaaI	ACNGT	2 cut(s)	44, 663
TaiI	ACGT	6 cut(s)	26, 121, 353, 530, 599, 743
TaqI	TCGA	4 cut(s)	143, 155, 213, 416
TasI	AATT	9 cut(s)	5, 259, 288, 312, 430, 514, 647, 690, 696
Tru1I	TTAA	7 cut(s)	93, 108, 287, 555, 581, 695, 720
Tru9I	TTAA	7 cut(s)	93, 108, 287, 555, 581, 695, 720
TseFI	GTSAC	4 cut(s)	353, 377, 449, 466
Tsp45I	GTSAC	4 cut(s)	353, 377, 449, 466
TspDTI	ATGAA	1 cut(s)	656
VpaK11BI	GGWCC	2 cut(s)	265, 550
VspI	ATTAAT	1 cut(s)	287
XapI	RAATTY	6 cut(s)	259, 312, 430, 514, 647, 690
XhoI	CTCGAG	1 cut(s)	142
XmiI	GTMKAC	1 cut(s)	534
XmnI	GAANNNNTTC	1 cut(s)	315
XspI	CTAG	2 cut(s)	56, 471
ZraI	GACGTC	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.