Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

4818356 .. 4818763

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGTCGTTTCTTAGACGGAGGAAGGGAAAAGCCGCTTCCGACTCAGAGCCGCCATCTCCGCCGATTGGCGACGAGAGCGAGAAAGAAAAGGAACCGCAAACGCAGAAGGGGCAGCAGCAAAAGCACACTCACAAGAAAAATGGCGGGGAAAAGCAGCAGAGGTGGTCGTGCGTTGACAGCTGCTGCTGGTTCATTGGGTTCATATGCTCGATCGATCTGGTGGTTCCTGCTCTTCCTCTACAACGCAATGCCCGCCTCGTTTCCGCAGTAGGTGACGGAGGCGATAACGGGGCCGATGACGGACCCGCCGGGGGTGAAATTGAGGAAGGAGGGGCTCACGGTGAAGCACCCGGTGGTGTTTGTGCCCGGGATTGTCACGGGCGGGCTCGAATTGTGGGAAGGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008080 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046027 GO:0046460 GO:0046463 GO:0046486 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 map00561

Pfam Domains

Protein Families

LCAT

Protein Analysis

136

Amino Acids

14.33

Weight (kDa)

6.89

Isoelectric Point (pI)

70.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	9 cut(s)	33, 50, 59, 95, 144, 253, 264, 306, 382
AdeI	CACNNNGTG	1 cut(s)	353
AfiI	CCNNNNNNNGG	2 cut(s)	65, 311
AluBI	AGCT	1 cut(s)	180
AluI	AGCT	1 cut(s)	180
AlwNI	CAGNNNCTG	1 cut(s)	183
Ama87I	CYCGRG	1 cut(s)	366
AoxI	GGCC	1 cut(s)	291
ApeKI	GCWGC	5 cut(s)	112, 115, 154, 180, 183
AspS9I	GGNCC	2 cut(s)	291, 302
AsuC2I	CCSGG	4 cut(s)	310, 351, 367, 368
AsuHPI	GGTGA	3 cut(s)	284, 326, 353
AvaI	CYCGRG	1 cut(s)	366
AvaII	GGWCC	1 cut(s)	302
BaeGI	GKGCMC	1 cut(s)	367
BanII	GRGCYC	2 cut(s)	337, 388
BbvI	GCAGC	5 cut(s)	124, 127, 166, 167, 170
BccI	CCATC	1 cut(s)	61
BcnI	CCSGG	4 cut(s)	310, 351, 367, 368
BisI	GCNGC	7 cut(s)	33, 50, 113, 116, 155, 181, 184
BlsI	GCNGC	7 cut(s)	34, 51, 114, 117, 156, 182, 185
Bme1390I	CCNGG	4 cut(s)	310, 351, 367, 368
Bme18I	GGWCC	1 cut(s)	302
BmeT110I	CYCGRG	1 cut(s)	366
BmgT120I	GGNCC	2 cut(s)	291, 302
BmiI	GGNNCC	4 cut(s)	93, 225, 292, 304
BmrFI	CCNGG	4 cut(s)	310, 351, 367, 368
BpuMI	CCSGG	4 cut(s)	310, 351, 367, 368
Bsa29I	ATCGAT	1 cut(s)	213
BsaJI	CCNNGG	2 cut(s)	309, 366
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 311
Bse3DI	GCAATG	1 cut(s)	253
BseCI	ATCGAT	1 cut(s)	213
BseDI	CCNNGG	2 cut(s)	309, 366
BseLI	CCNNNNNNNGG	2 cut(s)	65, 311
BseMI	GCAATG	1 cut(s)	253
BseMII	CTCAG	1 cut(s)	57
BseSI	GKGCMC	1 cut(s)	367
BseXI	GCAGC	5 cut(s)	124, 127, 166, 167, 170
Bsh1285I	CGRYCG	1 cut(s)	213
BshFI	GGCC	1 cut(s)	293
BshVI	ATCGAT	1 cut(s)	213
BsiEI	CGRYCG	1 cut(s)	213
BsiHKCI	CYCGRG	1 cut(s)	366
BsiSI	CCGG	3 cut(s)	309, 351, 367
BslI	CCNNNNNNNGG	2 cut(s)	65, 311
BsnI	GGCC	1 cut(s)	293
BsoBI	CYCGRG	1 cut(s)	366
Bsp1286I	GDGCHC	3 cut(s)	337, 367, 388
Bsp143I	GATC	2 cut(s)	210, 214
BspACI	CCGC	9 cut(s)	33, 50, 59, 95, 144, 253, 264, 306, 382
BspANI	GGCC	1 cut(s)	293
BspCNI	CTCAG	1 cut(s)	56
BspDI	ATCGAT	1 cut(s)	213
BspLI	GGNNCC	4 cut(s)	93, 225, 292, 304
BspQI	GCTCTTC	1 cut(s)	237
BsrDI	GCAATG	1 cut(s)	253
BssECI	CCNNGG	2 cut(s)	309, 366
BssMI	GATC	2 cut(s)	210, 214
Bst4CI	ACNGT	1 cut(s)	341
Bst6I	CTCTTC	1 cut(s)	237
BstC8I	GCNNGC	2 cut(s)	253, 384
BstDEI	CTNAG	2 cut(s)	11, 43
BstKTI	GATC	2 cut(s)	213, 217
BstMBI	GATC	2 cut(s)	210, 214
BstMCI	CGRYCG	1 cut(s)	213
BstMWI	GCNNNNNNNGC	6 cut(s)	58, 75, 109, 121, 177, 252
BstSCI	CCNGG	4 cut(s)	308, 349, 365, 366
BstSLI	GKGCMC	1 cut(s)	367
BstV1I	GCAGC	5 cut(s)	124, 127, 166, 167, 170
Bsu15I	ATCGAT	1 cut(s)	213
BsuRI	GGCC	1 cut(s)	293
BsuTUI	ATCGAT	1 cut(s)	213
Cac8I	GCNNGC	2 cut(s)	253, 384
CaiI	CAGNNNCTG	1 cut(s)	183
Cfr13I	GGNCC	2 cut(s)	291, 302
Cfr9I	CCCGGG	1 cut(s)	366
ClaI	ATCGAT	1 cut(s)	213
CviJI	RGCY	6 cut(s)	32, 49, 180, 293, 335, 386
CviKI_1	RGCY	6 cut(s)	32, 49, 180, 293, 335, 386
DdeI	CTNAG	2 cut(s)	11, 43
DpnI	GATC	2 cut(s)	212, 216
DpnII	GATC	2 cut(s)	210, 214
DraIII	CACNNNGTG	1 cut(s)	353
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
EciI	GGCGGA	1 cut(s)	48
Eco24I	GRGCYC	2 cut(s)	337, 388
Eco47I	GGWCC	1 cut(s)	302
Eco88I	CYCGRG	1 cut(s)	366
EcoT38I	GRGCYC	2 cut(s)	337, 388
FaiI	YATR	3 cut(s)	203, 205, 406
FauI	CCCGC	4 cut(s)	137, 260, 313, 375
FauNDI	CATATG	1 cut(s)	203
Fnu4HI	GCNGC	7 cut(s)	33, 50, 113, 116, 155, 181, 184
FriOI	GRGCYC	2 cut(s)	337, 388
Fsp4HI	GCNGC	7 cut(s)	33, 50, 113, 116, 155, 181, 184
GluI	GCNGC	7 cut(s)	33, 50, 113, 116, 155, 181, 184
HaeIII	GGCC	1 cut(s)	293
HapII	CCGG	3 cut(s)	309, 351, 367
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	1 cut(s)	41
HpaII	CCGG	3 cut(s)	309, 351, 367
HphI	GGTGA	3 cut(s)	284, 326, 353
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	2 cut(s)	40, 46
Hpy8I	GTNNAC	1 cut(s)	175
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	4 cut(s)	16, 100, 320, 393
HpyCH4III	ACNGT	1 cut(s)	341
HpyF10VI	GCNNNNNNNGC	6 cut(s)	58, 75, 109, 121, 177, 252
HpyF3I	CTNAG	2 cut(s)	11, 43
Kzo9I	GATC	2 cut(s)	210, 214
LguI	GCTCTTC	1 cut(s)	237
LpnPI	CCDG	6 cut(s)	172, 203, 240, 322, 364, 380
Lsp1109I	GCAGC	5 cut(s)	124, 127, 166, 167, 170
MaeIII	GTNAC	2 cut(s)	272, 374
MalI	GATC	2 cut(s)	212, 216
MboI	GATC	2 cut(s)	210, 214
MboII	GAAGA	1 cut(s)	224
MhlI	GDGCHC	3 cut(s)	337, 367, 388
MluCI	AATT	2 cut(s)	318, 390
MlyI	GAGTC	1 cut(s)	35
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	7 cut(s)	12, 153, 246, 266, 272, 316, 323
MspA1I	CMGCKG	1 cut(s)	180
MspI	CCGG	3 cut(s)	309, 351, 367
MspR9I	CCNGG	4 cut(s)	310, 351, 367, 368
MwoI	GCNNNNNNNGC	6 cut(s)	58, 75, 109, 121, 177, 252
NciI	CCSGG	4 cut(s)	310, 351, 367, 368
NdeI	CATATG	1 cut(s)	203
NdeII	GATC	2 cut(s)	210, 214
NlaIV	GGNNCC	4 cut(s)	93, 225, 292, 304
NmuCI	GTSAC	2 cut(s)	272, 374
PciSI	GCTCTTC	1 cut(s)	237
PkrI	GCNGC	7 cut(s)	34, 51, 114, 117, 156, 182, 185
Ple19I	CGATCG	1 cut(s)	213
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
PspN4I	GGNNCC	4 cut(s)	93, 225, 292, 304
PspPI	GGNCC	2 cut(s)	291, 302
PstNI	CAGNNNCTG	1 cut(s)	183
PvuI	CGATCG	1 cut(s)	213
PvuII	CAGCTG	1 cut(s)	180
SapI	GCTCTTC	1 cut(s)	237
SatI	GCNGC	7 cut(s)	33, 50, 113, 116, 155, 181, 184
Sau3AI	GATC	2 cut(s)	210, 214
Sau96I	GGNCC	2 cut(s)	291, 302
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	4 cut(s)	310, 351, 367, 368
SduI	GDGCHC	3 cut(s)	337, 367, 388
SetI	ASST	3 cut(s)	164, 182, 274
SinI	GGWCC	1 cut(s)	302
SmaI	CCCGGG	1 cut(s)	368
Sse9I	AATT	2 cut(s)	318, 390
SsiI	CCGC	9 cut(s)	33, 50, 59, 95, 144, 253, 264, 306, 382
StyD4I	CCNGG	4 cut(s)	308, 349, 365, 366
TaaI	ACNGT	1 cut(s)	341
TaqI	TCGA	3 cut(s)	209, 213, 388
TasI	AATT	2 cut(s)	318, 390
TauI	GCSGC	2 cut(s)	35, 52
TseFI	GTSAC	2 cut(s)	272, 374
TseI	GCWGC	5 cut(s)	112, 115, 154, 180, 183
Tsp45I	GTSAC	2 cut(s)	272, 374
TspDTI	ATGAA	2 cut(s)	181, 190
TspGWI	ACGGA	3 cut(s)	31, 291, 315
TspMI	CCCGGG	1 cut(s)	366
VpaK11BI	GGWCC	1 cut(s)	302
XmaI	CCCGGG	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.