Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

5412963 .. 5413385

Gene Structure 423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGCACATGCTACATCCACACCGGCCGGATCGAAAGATCGATCTCAAGGAGTACAATGCTCTCATTCATTGTTTTGGCCAGAATCCTGAGTTGAGAGTGAACTCTACAAAATCCATGATTGGACACCTACTGGGAGCATCTGGTGCTGTAGAAGCTGTTGCAGCAGTACAGAAGAACTGGGTGGATACATCCAAATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004312 GO:0004315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009631 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016053 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032787 GO:0033559 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00780 ko01100 ko01212 map00061 map00780 map01100 map01212

Pfam Domains

Protein Families

Ketoacyl-synt_C ketoacyl-synt

Protein Analysis

67

Amino Acids

7.43

Weight (kDa)

8.93

Isoelectric Point (pI)

13.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ketoacyl-synt_C	PF02801	14 - 57	1.5e-10	Beta-ketoacyl synthase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	36
AcoI	YGGCCR	2 cut(s)	23, 76
AfaI	GTAC	2 cut(s)	53, 168
AluBI	AGCT	1 cut(s)	155
AluI	AGCT	1 cut(s)	155
AlwI	GGATC	1 cut(s)	36
AoxI	GGCC	2 cut(s)	23, 76
ApeKI	GCWGC	1 cut(s)	161
BalI	TGGCCA	1 cut(s)	78
BbvI	GCAGC	1 cut(s)	173
BciVI	GTATCC	1 cut(s)	178
BfmI	CTRYAG	1 cut(s)	147
BfuI	GTATCC	1 cut(s)	178
BisI	GCNGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	163
BmrI	ACTGGG	2 cut(s)	140, 187
BmsI	GCATC	1 cut(s)	146
BmuI	ACTGGG	2 cut(s)	140, 187
BpuEI	CTTGAG	1 cut(s)	29
Bsa29I	ATCGAT	1 cut(s)	39
Bse118I	RCCGGY	1 cut(s)	21
Bse1I	ACTGG	2 cut(s)	135, 182
BseCI	ATCGAT	1 cut(s)	39
BseGI	GGATG	2 cut(s)	13, 188
BseMII	CTCAG	1 cut(s)	78
BseNI	ACTGG	2 cut(s)	135, 182
BseX3I	CGGCCG	1 cut(s)	23
BseXI	GCAGC	1 cut(s)	173
Bsh1285I	CGRYCG	1 cut(s)	26
BshFI	GGCC	2 cut(s)	25, 78
BshVI	ATCGAT	1 cut(s)	39
BsiEI	CGRYCG	1 cut(s)	26
BsiSI	CCGG	2 cut(s)	22, 26
BsnI	GGCC	2 cut(s)	25, 78
Bsp143I	GATC	3 cut(s)	28, 36, 40
BspANI	GGCC	2 cut(s)	25, 78
BspCNI	CTCAG	1 cut(s)	79
BspDI	ATCGAT	1 cut(s)	39
BspPI	GGATC	1 cut(s)	36
BsrFI	RCCGGY	1 cut(s)	21
BsrI	ACTGG	2 cut(s)	135, 182
BssAI	RCCGGY	1 cut(s)	21
BssMI	GATC	3 cut(s)	28, 36, 40
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstDEI	CTNAG	1 cut(s)	87
BstF5I	GGATG	2 cut(s)	13, 188
BstKTI	GATC	3 cut(s)	31, 39, 43
BstMBI	GATC	3 cut(s)	28, 36, 40
BstMCI	CGRYCG	1 cut(s)	26
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 152, 161
BstNSI	RCATGY	1 cut(s)	10
BstSFI	CTRYAG	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	173
BstZI	CGGCCG	1 cut(s)	23
Bsu15I	ATCGAT	1 cut(s)	39
BsuI	GTATCC	1 cut(s)	178
BsuRI	GGCC	2 cut(s)	25, 78
BsuTUI	ATCGAT	1 cut(s)	39
BtsCI	GGATG	2 cut(s)	13, 188
Cfr10I	RCCGGY	1 cut(s)	21
ClaI	ATCGAT	1 cut(s)	39
Csp6I	GTAC	2 cut(s)	52, 167
CviAII	CATG	2 cut(s)	7, 115
CviJI	RGCY	3 cut(s)	25, 78, 155
CviKI_1	RGCY	3 cut(s)	25, 78, 155
CviQI	GTAC	2 cut(s)	52, 167
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	3 cut(s)	30, 38, 42
DpnII	GATC	3 cut(s)	28, 36, 40
EaeI	YGGCCR	2 cut(s)	23, 76
EagI	CGGCCG	1 cut(s)	23
EclXI	CGGCCG	1 cut(s)	23
Eco52I	CGGCCG	1 cut(s)	23
FaeI	CATG	2 cut(s)	10, 118
FaiI	YATR	2 cut(s)	8, 116
FatI	CATG	2 cut(s)	6, 114
Fnu4HI	GCNGC	1 cut(s)	162
FokI	GGATG	1 cut(s)	175
Fsp4HI	GCNGC	1 cut(s)	162
GluI	GCNGC	1 cut(s)	162
HaeIII	GGCC	2 cut(s)	25, 78
HapII	CCGG	2 cut(s)	22, 26
Hin1II	CATG	2 cut(s)	10, 118
HinfI	GANTC	1 cut(s)	82
HpaII	CCGG	2 cut(s)	22, 26
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188III	TCNNGA	1 cut(s)	86
Hpy8I	GTNNAC	1 cut(s)	100
HpyCH4V	TGCA	2 cut(s)	4, 161
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 152, 161
HpyF3I	CTNAG	1 cut(s)	87
Hsp92II	CATG	2 cut(s)	10, 118
Kzo9I	GATC	3 cut(s)	28, 36, 40
LmnI	GCTCC	1 cut(s)	134
LpnPI	CCDG	7 cut(s)	35, 39, 92, 99, 116, 126, 163
Lsp1109I	GCAGC	1 cut(s)	173
LweI	GCATC	1 cut(s)	146
MalI	GATC	3 cut(s)	30, 38, 42
MboI	GATC	3 cut(s)	28, 36, 40
MboII	GAAGA	1 cut(s)	184
MlsI	TGGCCA	1 cut(s)	78
MluNI	TGGCCA	1 cut(s)	78
Mox20I	TGGCCA	1 cut(s)	78
MscI	TGGCCA	1 cut(s)	78
MseI	TTAA	1 cut(s)	199
Msp20I	TGGCCA	1 cut(s)	78
MspI	CCGG	2 cut(s)	22, 26
MwoI	GCNNNNNNNGC	3 cut(s)	143, 152, 161
NdeII	GATC	3 cut(s)	28, 36, 40
NlaIII	CATG	2 cut(s)	10, 118
NspI	RCATGY	1 cut(s)	10
PfeI	GAWTC	1 cut(s)	82
PkrI	GCNGC	1 cut(s)	163
RsaI	GTAC	2 cut(s)	53, 168
RsaNI	GTAC	2 cut(s)	52, 167
SaqAI	TTAA	1 cut(s)	199
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	3 cut(s)	28, 36, 40
SetI	ASST	2 cut(s)	129, 157
SfaNI	GCATC	1 cut(s)	146
SfcI	CTRYAG	1 cut(s)	147
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
SspI	AATATT	1 cut(s)	197
TaqI	TCGA	2 cut(s)	31, 39
TatI	WGTACW	2 cut(s)	51, 166
TfiI	GAWTC	1 cut(s)	82
Tru1I	TTAA	1 cut(s)	199
Tru9I	TTAA	1 cut(s)	199
TseI	GCWGC	1 cut(s)	161
TspDTI	ATGAA	1 cut(s)	56
XceI	RCATGY	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.