Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

5727103 .. 5727968

Gene Structure 866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g08180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGATGTTTTAGTAATGGAGAATTTATTATTTAGACGGAATGTCACGCGGCTTTATGATCTGAAAGGATCTTCTCGATCACGTTATAATCCAGATACAAGTGGGATCAATAAAGTTCTACTCGACCAGAATCTGATTGAAGCAATGCCGACTTCTCCAATTTTTGTGGGGAGCAAGGCAAAGCGGCGACTAGAGAGAGCTGTCTGGAATGATACTGCGTTCCTTGCTTCGATTGATGTCATGGACTACTCGTTACTGGTCGGTGTGGACGAGGAAAAGGATGAGCTGGTTGTGGGGATCATTGATTTTATGAGACAGTACACATGGGACAAGCACCTTGAAACTTGGGTGAAGACTTCCGGGATTCTCGGTGGACCCAAGAACACGTCTCCAACCGTGATTTCACCCCAGCAATACAAGAAACGATTCAGGAAAGCTATGACAACCTACTTCCTCATGGTGCCCGATCAGTGGTCTCCCCTAATGATCGTTCCGAGCGGGTCGCAATCTGACCTTGGTGAAGAAACTGCGCAAGATCCGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000285 GO:0000322 GO:0000323 GO:0000324 GO:0000329 GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005942 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0008289 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016301 GO:0016307 GO:0016310 GO:0016482 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0019898 GO:0030258 GO:0031090 GO:0031410 GO:0031982 GO:0032266 GO:0032991 GO:0035032 GO:0035091 GO:0042147 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061695 GO:0070772 GO:0071704 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:1901981 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00562 ko04070 ko04145 ko04810 map00562 map04070 map04145 map04810

Pfam Domains

Protein Families

Cpn60_TCP1 FYVE PIP5K

Protein Analysis

182

Amino Acids

20.6

Weight (kDa)

5.89

Isoelectric Point (pI)

46.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIP5K	PF01504	3 - 93	2.9e-18	Phosphatidylinositol-4-phosphate 5-Kinase
PIP5K	PF01504	93 - 149	1.9e-09	Phosphatidylinositol-4-phosphate 5-Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	87
Acc16I	TGCGCA	1 cut(s)	531
AccB1I	GGYRCC	1 cut(s)	460
AccBSI	CCGCTC	1 cut(s)	498
AccII	CGCG	1 cut(s)	49
AciI	CCGC	3 cut(s)	49, 184, 498
AclWI	GGATC	4 cut(s)	76, 113, 305, 530
AcsI	RAATTY	1 cut(s)	22
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	1 cut(s)	471
AflIII	ACRYGT	1 cut(s)	384
AgsI	TTSAA	2 cut(s)	140, 341
AhdI	GACNNNNNGTC	1 cut(s)	41
AjiI	CACGTC	1 cut(s)	387
AjuI	GAANNNNNNNTTGG	2 cut(s)	385, 417
AluBI	AGCT	4 cut(s)	200, 286, 437, 543
AluI	AGCT	4 cut(s)	200, 286, 437, 543
Alw26I	GTCTC	3 cut(s)	307, 393, 480
AlwI	GGATC	4 cut(s)	76, 113, 305, 530
AlwNI	CAGNNNCTG	1 cut(s)	133
ApoI	RAATTY	1 cut(s)	22
Asp700I	GAANNNNTTC	1 cut(s)	425
AspLEI	GCGC	1 cut(s)	532
AspS9I	GGNCC	1 cut(s)	374
AsuC2I	CCSGG	1 cut(s)	361
AsuHPI	GGTGA	3 cut(s)	361, 396, 530
AvaII	GGWCC	1 cut(s)	374
BaeGI	GKGCMC	1 cut(s)	465
BanI	GGYRCC	1 cut(s)	460
BbsI	GAAGAC	1 cut(s)	359
BcnI	CCSGG	1 cut(s)	361
BcoDI	GTCTC	3 cut(s)	307, 393, 480
BfaI	CTAG	1 cut(s)	191
BisI	GCNGC	2 cut(s)	50, 185
BlsI	GCNGC	2 cut(s)	51, 186
Bme1390I	CCNGG	1 cut(s)	361
Bme18I	GGWCC	1 cut(s)	374
BmeRI	GACNNNNNGTC	1 cut(s)	41
BmgBI	CACGTC	1 cut(s)	387
BmgT120I	GGNCC	1 cut(s)	374
BmiI	GGNNCC	2 cut(s)	376, 462
BmrFI	CCNGG	1 cut(s)	361
BpiI	GAAGAC	1 cut(s)	359
BpuMI	CCSGG	1 cut(s)	361
BsaI	GGTCTC	1 cut(s)	480
BsaJI	CCNNGG	1 cut(s)	514
Bsc4I	CCNNNNNNNGG	1 cut(s)	471
Bse1I	ACTGG	1 cut(s)	261
Bse3DI	GCAATG	1 cut(s)	150
BseDI	CCNNGG	1 cut(s)	514
BseGI	GGATG	2 cut(s)	10, 286
BseLI	CCNNNNNNNGG	1 cut(s)	471
BseMI	GCAATG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	261
BseSI	GKGCMC	1 cut(s)	465
BseYI	CCCAGC	1 cut(s)	408
Bsh1236I	CGCG	1 cut(s)	49
BshNI	GGYRCC	1 cut(s)	460
BsiSI	CCGG	1 cut(s)	360
BslFI	GGGAC	1 cut(s)	341
BslI	CCNNNNNNNGG	1 cut(s)	471
BsmAI	GTCTC	3 cut(s)	307, 393, 480
BsmBI	CGTCTC	1 cut(s)	393
BsmFI	GGGAC	1 cut(s)	341
Bso31I	GGTCTC	1 cut(s)	480
Bsp1286I	GDGCHC	1 cut(s)	465
Bsp143I	GATC	8 cut(s)	58, 68, 77, 105, 297, 466, 486, 535
BspACI	CCGC	3 cut(s)	49, 184, 498
BspFNI	CGCG	1 cut(s)	49
BspLI	GGNNCC	2 cut(s)	376, 462
BspPI	GGATC	4 cut(s)	76, 113, 305, 530
BspT107I	GGYRCC	1 cut(s)	460
BspTNI	GGTCTC	1 cut(s)	480
BsrBI	CCGCTC	1 cut(s)	498
BsrDI	GCAATG	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	261
BssECI	CCNNGG	1 cut(s)	514
BssMI	GATC	8 cut(s)	58, 68, 77, 105, 297, 466, 486, 535
BssT1I	CCWWGG	1 cut(s)	514
Bst4CI	ACNGT	2 cut(s)	318, 397
BstF5I	GGATG	2 cut(s)	10, 286
BstFNI	CGCG	1 cut(s)	49
BstHHI	GCGC	1 cut(s)	532
BstKTI	GATC	8 cut(s)	61, 71, 80, 108, 300, 469, 489, 538
BstMAI	GTCTC	3 cut(s)	307, 393, 480
BstMBI	GATC	8 cut(s)	58, 68, 77, 105, 297, 466, 486, 535
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	359
BstSLI	GKGCMC	1 cut(s)	465
BstUI	CGCG	1 cut(s)	49
BstV2I	GAAGAC	1 cut(s)	359
BstX2I	RGATCY	2 cut(s)	68, 535
BstYI	RGATCY	2 cut(s)	68, 535
BtrI	CACGTC	1 cut(s)	387
BtsCI	GGATG	2 cut(s)	10, 286
BtsIMutI	CAGTG	1 cut(s)	476
CaiI	CAGNNNCTG	1 cut(s)	133
CfoI	GCGC	1 cut(s)	532
Cfr13I	GGNCC	1 cut(s)	374
Csp6I	GTAC	1 cut(s)	319
CspCI	CAANNNNNGTGG	2 cut(s)	147, 182
CviAII	CATG	3 cut(s)	241, 324, 457
CviJI	RGCY	5 cut(s)	52, 200, 286, 437, 543
CviKI_1	RGCY	5 cut(s)	52, 200, 286, 437, 543
CviQI	GTAC	1 cut(s)	319
DpnI	GATC	8 cut(s)	60, 70, 79, 107, 299, 468, 488, 537
DpnII	GATC	8 cut(s)	58, 68, 77, 105, 297, 466, 486, 535
DriI	GACNNNNNGTC	1 cut(s)	41
Eam1105I	GACNNNNNGTC	1 cut(s)	41
Eco130I	CCWWGG	1 cut(s)	514
Eco31I	GGTCTC	1 cut(s)	480
Eco47I	GGWCC	1 cut(s)	374
EcoT14I	CCWWGG	1 cut(s)	514
ErhI	CCWWGG	1 cut(s)	514
Esp3I	CGTCTC	1 cut(s)	393
FaeI	CATG	3 cut(s)	244, 327, 460
FaiI	YATR	7 cut(s)	57, 87, 242, 311, 325, 440, 458
FaqI	GGGAC	1 cut(s)	341
FatI	CATG	3 cut(s)	240, 323, 456
FauI	CCCGC	1 cut(s)	491
Fnu4HI	GCNGC	2 cut(s)	50, 185
FokI	GGATG	2 cut(s)	17, 293
Fsp4HI	GCNGC	2 cut(s)	50, 185
FspBI	CTAG	1 cut(s)	191
FspI	TGCGCA	1 cut(s)	531
GlaI	GCGC	1 cut(s)	531
GluI	GCNGC	2 cut(s)	50, 185
GsaI	CCCAGC	1 cut(s)	412
HapII	CCGG	1 cut(s)	360
HhaI	GCGC	1 cut(s)	532
Hin1II	CATG	3 cut(s)	244, 327, 460
Hin6I	GCGC	1 cut(s)	530
HinP1I	GCGC	1 cut(s)	530
HinfI	GANTC	3 cut(s)	130, 364, 426
HpaII	CCGG	1 cut(s)	360
HphI	GGTGA	3 cut(s)	361, 396, 530
Hpy166II	GTNNAC	3 cut(s)	268, 321, 374
Hpy188I	TCNGA	5 cut(s)	63, 135, 495, 511, 540
Hpy188III	TCNNGA	4 cut(s)	75, 92, 205, 430
Hpy8I	GTNNAC	3 cut(s)	268, 321, 374
HpyCH4III	ACNGT	2 cut(s)	318, 397
HpyCH4IV	ACGT	2 cut(s)	82, 386
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpySE526I	ACGT	2 cut(s)	82, 386
Hsp92II	CATG	3 cut(s)	244, 327, 460
HspAI	GCGC	1 cut(s)	530
Kzo9I	GATC	8 cut(s)	58, 68, 77, 105, 297, 466, 486, 535
LmnI	GCTCC	1 cut(s)	171
LpnPI	CCDG	8 cut(s)	105, 140, 190, 242, 272, 373, 415, 422
MaeI	CTAG	1 cut(s)	191
MaeII	ACGT	2 cut(s)	82, 386
MaeIII	GTNAC	2 cut(s)	43, 252
MalI	GATC	8 cut(s)	60, 70, 79, 107, 299, 468, 488, 537
MbiI	CCGCTC	1 cut(s)	498
MboI	GATC	8 cut(s)	58, 68, 77, 105, 297, 466, 486, 535
MboII	GAAGA	3 cut(s)	63, 364, 533
MflI	RGATCY	2 cut(s)	68, 535
MhlI	GDGCHC	1 cut(s)	465
MluCI	AATT	2 cut(s)	22, 159
MmeI	TCCRAC	1 cut(s)	416
MnlI	CCTC	2 cut(s)	265, 464
MroXI	GAANNNNTTC	1 cut(s)	425
MspI	CCGG	1 cut(s)	360
MspR9I	CCNGG	1 cut(s)	361
MvnI	CGCG	1 cut(s)	49
MwoI	GCNNNNNNNGC	1 cut(s)	224
NciI	CCSGG	1 cut(s)	361
NdeII	GATC	8 cut(s)	58, 68, 77, 105, 297, 466, 486, 535
NlaIII	CATG	3 cut(s)	244, 327, 460
NlaIV	GGNNCC	2 cut(s)	376, 462
NmuCI	GTSAC	1 cut(s)	43
NsbI	TGCGCA	1 cut(s)	531
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PdmI	GAANNNNTTC	1 cut(s)	425
PfeI	GAWTC	3 cut(s)	130, 364, 426
PfoI	TCCNGGA	1 cut(s)	359
PkrI	GCNGC	2 cut(s)	51, 186
PsiI	TTATAA	1 cut(s)	87
PspFI	CCCAGC	1 cut(s)	408
PspN4I	GGNNCC	2 cut(s)	376, 462
PspPI	GGNCC	1 cut(s)	374
PstNI	CAGNNNCTG	1 cut(s)	133
PsuI	RGATCY	2 cut(s)	68, 535
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
SatI	GCNGC	2 cut(s)	50, 185
Sau3AI	GATC	8 cut(s)	58, 68, 77, 105, 297, 466, 486, 535
Sau96I	GGNCC	1 cut(s)	374
ScrFI	CCNGG	1 cut(s)	361
SduI	GDGCHC	1 cut(s)	465
SetI	ASST	9 cut(s)	85, 202, 288, 339, 389, 439, 449, 516, 545
SinI	GGWCC	1 cut(s)	374
Sse9I	AATT	2 cut(s)	22, 159
SsiI	CCGC	3 cut(s)	49, 184, 498
SspMI	CTAG	1 cut(s)	191
StyD4I	CCNGG	1 cut(s)	359
StyI	CCWWGG	1 cut(s)	514
TaaI	ACNGT	2 cut(s)	318, 397
TaiI	ACGT	2 cut(s)	85, 389
TaqI	TCGA	3 cut(s)	76, 123, 230
TasI	AATT	2 cut(s)	22, 159
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	2 cut(s)	52, 187
TfiI	GAWTC	3 cut(s)	130, 364, 426
TscAI	CASTG	1 cut(s)	476
TseFI	GTSAC	1 cut(s)	43
Tsp45I	GTSAC	1 cut(s)	43
TspGWI	ACGGA	1 cut(s)	52
TspRI	CASTG	1 cut(s)	476
VpaK11BI	GGWCC	1 cut(s)	374
XapI	RAATTY	1 cut(s)	22
XmnI	GAANNNNTTC	1 cut(s)	425
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.