pycom02g08410
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Forward (+)
5869910 .. 5871011
1102 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 510 bp
ATGACAATGGACCTGCACCCGTCAATGGCGCAAAGTGTTAGAACAAGTAGGTCTTCTTTTAGCTCTAGCAATGGCAATGGGAATACAACTCCTTTACACAGCTCTGCTGCTGCTGCATTTGCAAATGGGGATGATTATGACAGTGATAGCTCCAGCTTGGCACCGCAAACACCAAGGACCTTGTCCATGGACATTCCAGCAGAACTTGCTGGTGCAATACCCTTGATTGATAGATTTCAGGTAGAAGGATTTTTGAGGTTGATGCAGAAACAGATTCAGTCCGCTGGAAAACGTGGATTCTTTACAAAAAAATCCGTTGGTCCACAACCCCGAGAAAGGTTCACTTTTGAGGATATGCTGTGCTACCAAAAGGATCCAATACCTACATCATTACTGAAAATCAATAGTGACCTGGTAAGCCGGGCAATGAAACTGTTCCAAATCATTTTGAAGTACATGGGAGTTGATTCATCTGATGATCGATCGAGTTACTCCAGCAAGCTTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000226 GO:0000902 GO:0000904 GO:0001578 GO:0003002 GO:0003674 GO:0003774 GO:0003777 GO:0003779 GO:0003824 GO:0005488 GO:0005509 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005871 GO:0005874 GO:0005875 GO:0005881 GO:0005938 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007154 GO:0007267 GO:0007275 GO:0007389 GO:0008017 GO:0008092 GO:0008150 GO:0008569 GO:0009524 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0015630 GO:0015631 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030154 GO:0030554 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0032991 GO:0036094 GO:0042623 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043531 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0045165 GO:0045168 GO:0046872 GO:0046983 GO:0048468 GO:0048629 GO:0048856 GO:0048869 GO:0051015 GO:0055028 GO:0071840 GO:0071944 GO:0072686 GO:0090558 GO:0090626 GO:0097159 GO:0097367 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1901265 GO:1901363 GO:1990939
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FERM_M FERM_N Kinesin MyTH4

Protein Analysis

170

Amino Acids

18.64

Weight (kDa)

9.1

Isoelectric Point (pI)

43.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 21
AccB1I GGYRCC 1 cut(s) 160
AciI CCGC 2 cut(s) 164, 282
AclWI GGATC 2 cut(s) 368, 381
AfaI GTAC 1 cut(s) 455
AfiI CCNNNNNNNGG 2 cut(s) 25, 336
AgsI TTSAA 1 cut(s) 451
AjnI CCWGG 1 cut(s) 411
AluBI AGCT 5 cut(s) 63, 102, 150, 156, 502
AluI AGCT 5 cut(s) 63, 102, 150, 156, 502
AlwI GGATC 2 cut(s) 368, 381
Ama87I CYCGRG 1 cut(s) 330
ApeKI GCWGC 3 cut(s) 107, 110, 113
Asp700I GAANNNNTTC 1 cut(s) 434
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 3 cut(s) 10, 177, 320
AsuC2I CCSGG 1 cut(s) 422
AvaI CYCGRG 1 cut(s) 330
AvaII GGWCC 3 cut(s) 10, 177, 320
BamHI GGATCC 1 cut(s) 373
BanI GGYRCC 1 cut(s) 160
BbsI GAAGAC 1 cut(s) 45
BbvI GCAGC 3 cut(s) 94, 97, 100
BciT130I CCWGG 1 cut(s) 413
BcnI CCSGG 1 cut(s) 422
BfaI CTAG 1 cut(s) 66
BfuAI ACCTGC 1 cut(s) 21
BisI GCNGC 3 cut(s) 108, 111, 114
BlsI GCNGC 3 cut(s) 109, 112, 115
Bme1390I CCNGG 2 cut(s) 413, 422
Bme18I GGWCC 3 cut(s) 10, 177, 320
BmeT110I CYCGRG 1 cut(s) 330
BmgT120I GGNCC 3 cut(s) 10, 177, 320
BmiI GGNNCC 2 cut(s) 162, 375
BmrFI CCNGG 2 cut(s) 413, 422
BmsI GCATC 1 cut(s) 252
BpiI GAAGAC 1 cut(s) 45
BpmI CTGGAG 2 cut(s) 136, 478
BpuMI CCSGG 1 cut(s) 422
Bsa29I ATCGAT 1 cut(s) 481
BsaJI CCNNGG 2 cut(s) 173, 186
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 336
Bse3DI GCAATG 3 cut(s) 76, 82, 432
BseBI CCWGG 1 cut(s) 413
BseCI ATCGAT 1 cut(s) 481
BseDI CCNNGG 2 cut(s) 173, 186
BseGI GGATG 1 cut(s) 136
BseLI CCNNNNNNNGG 2 cut(s) 25, 336
BseMI GCAATG 3 cut(s) 76, 82, 432
BseXI GCAGC 3 cut(s) 94, 97, 100
Bsh1285I CGRYCG 1 cut(s) 485
BshNI GGYRCC 1 cut(s) 160
BshVI ATCGAT 1 cut(s) 481
BsiEI CGRYCG 1 cut(s) 485
BsiHKCI CYCGRG 1 cut(s) 330
BsiSI CCGG 1 cut(s) 421
BslI CCNNNNNNNGG 2 cut(s) 25, 336
BsoBI CYCGRG 1 cut(s) 330
Bsp143I GATC 3 cut(s) 373, 478, 482
Bsp19I CCATGG 1 cut(s) 186
BspACI CCGC 2 cut(s) 164, 282
BspDI ATCGAT 1 cut(s) 481
BspLI GGNNCC 2 cut(s) 162, 375
BspMI ACCTGC 1 cut(s) 21
BspPI GGATC 2 cut(s) 368, 381
BspT107I GGYRCC 1 cut(s) 160
BsrDI GCAATG 3 cut(s) 76, 82, 432
BssECI CCNNGG 2 cut(s) 173, 186
BssMI GATC 3 cut(s) 373, 478, 482
BssT1I CCWWGG 2 cut(s) 173, 186
Bst2UI CCWGG 1 cut(s) 413
Bst4CI ACNGT 2 cut(s) 143, 435
BstAPI GCANNNNNTGC 1 cut(s) 206
BstC8I GCNNGC 1 cut(s) 500
BstDEI CTNAG 1 cut(s) 503
BstDSI CCRYGG 1 cut(s) 186
BstF5I GGATG 1 cut(s) 136
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 3 cut(s) 376, 481, 485
BstMBI GATC 3 cut(s) 373, 478, 482
BstMCI CGRYCG 1 cut(s) 485
BstMWI GCNNNNNNNGC 3 cut(s) 113, 119, 206
BstNI CCWGG 1 cut(s) 413
BstSCI CCNGG 2 cut(s) 411, 420
BstV1I GCAGC 3 cut(s) 94, 97, 100
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 373
BstYI RGATCY 1 cut(s) 373
Bsu15I ATCGAT 1 cut(s) 481
BsuTUI ATCGAT 1 cut(s) 481
BtgI CCRYGG 1 cut(s) 186
BtsCI GGATG 1 cut(s) 136
BtsIMutI CAGTG 1 cut(s) 148
BveI ACCTGC 1 cut(s) 21
Cac8I GCNNGC 1 cut(s) 500
CfoI GCGC 1 cut(s) 31
Cfr13I GGNCC 3 cut(s) 10, 177, 320
ClaI ATCGAT 1 cut(s) 481
CsiI ACCWGGT 1 cut(s) 411
Csp6I GTAC 1 cut(s) 454
CviAII CATG 2 cut(s) 187, 457
CviJI RGCY 6 cut(s) 63, 102, 150, 156, 420, 502
CviKI_1 RGCY 6 cut(s) 63, 102, 150, 156, 420, 502
CviQI GTAC 1 cut(s) 454
DdeI CTNAG 1 cut(s) 503
DpnI GATC 3 cut(s) 375, 480, 484
DpnII GATC 3 cut(s) 373, 478, 482
Eco130I CCWWGG 2 cut(s) 173, 186
Eco47I GGWCC 3 cut(s) 10, 177, 320
Eco88I CYCGRG 1 cut(s) 330
EcoO109I RGGNCCY 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 411
EcoT14I CCWWGG 2 cut(s) 173, 186
ErhI CCWWGG 2 cut(s) 173, 186
FaeI CATG 2 cut(s) 190, 460
FaiI YATR 4 cut(s) 138, 188, 356, 458
FalI AAGNNNNNCTT 4 cut(s) 37, 69, 328, 360
FatI CATG 2 cut(s) 186, 456
Fnu4HI GCNGC 3 cut(s) 108, 111, 114
FokI GGATG 1 cut(s) 143
Fsp4HI GCNGC 3 cut(s) 108, 111, 114
FspBI CTAG 1 cut(s) 66
GlaI GCGC 1 cut(s) 30
GluI GCNGC 3 cut(s) 108, 111, 114
GsuI CTGGAG 2 cut(s) 136, 478
HapII CCGG 1 cut(s) 421
HhaI GCGC 1 cut(s) 31
Hin1II CATG 2 cut(s) 190, 460
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HindIII AAGCTT 1 cut(s) 500
HinfI GANTC 3 cut(s) 274, 297, 467
HpaII CCGG 1 cut(s) 421
Hpy166II GTNNAC 2 cut(s) 323, 342
Hpy188I TCNGA 1 cut(s) 475
Hpy8I GTNNAC 2 cut(s) 323, 342
HpyAV CCTTC 1 cut(s) 239
HpyCH4III ACNGT 2 cut(s) 143, 435
HpyCH4IV ACGT 1 cut(s) 292
HpyCH4V TGCA 5 cut(s) 16, 116, 122, 215, 265
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 119, 206
HpyF3I CTNAG 1 cut(s) 503
HpySE526I ACGT 1 cut(s) 292
Hsp92II CATG 2 cut(s) 190, 460
HspAI GCGC 1 cut(s) 29
Kzo9I GATC 3 cut(s) 373, 478, 482
LmnI GCTCC 1 cut(s) 155
LpnPI CCDG 9 cut(s) 26, 166, 195, 210, 224, 270, 398, 425, 434
Lsp1109I GCAGC 3 cut(s) 94, 97, 100
LweI GCATC 1 cut(s) 252
MabI ACCWGGT 1 cut(s) 411
MaeI CTAG 1 cut(s) 66
MaeII ACGT 1 cut(s) 292
MaeIII GTNAC 2 cut(s) 407, 488
MalI GATC 3 cut(s) 375, 480, 484
MboI GATC 3 cut(s) 373, 478, 482
MboII GAAGA 1 cut(s) 45
MflI RGATCY 1 cut(s) 373
MnlI CCTC 2 cut(s) 249, 343
MroXI GAANNNNTTC 1 cut(s) 434
MspA1I CMGCKG 1 cut(s) 284
MspI CCGG 1 cut(s) 421
MspR9I CCNGG 2 cut(s) 413, 422
MvaI CCWGG 1 cut(s) 413
MwoI GCNNNNNNNGC 3 cut(s) 113, 119, 206
NciI CCSGG 1 cut(s) 422
NcoI CCATGG 1 cut(s) 186
NdeII GATC 3 cut(s) 373, 478, 482
NlaIII CATG 2 cut(s) 190, 460
NlaIV GGNNCC 2 cut(s) 162, 375
NmuCI GTSAC 1 cut(s) 407
PdmI GAANNNNTTC 1 cut(s) 434
PfeI GAWTC 3 cut(s) 274, 297, 467
PflFI GACNNNGTC 1 cut(s) 181
PkrI GCNGC 3 cut(s) 109, 112, 115
Ple19I CGATCG 1 cut(s) 485
PpuMI RGGWCCY 1 cut(s) 177
Psp5II RGGWCCY 1 cut(s) 177
Psp6I CCWGG 1 cut(s) 411
PspGI CCWGG 1 cut(s) 411
PspN4I GGNNCC 2 cut(s) 162, 375
PspPI GGNCC 3 cut(s) 10, 177, 320
PspPPI RGGWCCY 1 cut(s) 177
PsuI RGATCY 1 cut(s) 373
PsyI GACNNNGTC 1 cut(s) 181
PvuI CGATCG 1 cut(s) 485
RsaI GTAC 1 cut(s) 455
RsaNI GTAC 1 cut(s) 454
SatI GCNGC 3 cut(s) 108, 111, 114
Sau3AI GATC 3 cut(s) 373, 478, 482
Sau96I GGNCC 3 cut(s) 10, 177, 320
ScrFI CCNGG 2 cut(s) 413, 422
SexAI ACCWGGT 1 cut(s) 411
SfaNI GCATC 1 cut(s) 252
SinI GGWCC 3 cut(s) 10, 177, 320
SsiI CCGC 2 cut(s) 164, 282
SspMI CTAG 1 cut(s) 66
StyD4I CCNGG 2 cut(s) 411, 420
StyI CCWWGG 2 cut(s) 173, 186
TaaI ACNGT 2 cut(s) 143, 435
TaiI ACGT 1 cut(s) 295
TaqI TCGA 2 cut(s) 481, 485
TatI WGTACW 1 cut(s) 453
TfiI GAWTC 3 cut(s) 274, 297, 467
TscAI CASTG 1 cut(s) 148
TseFI GTSAC 1 cut(s) 407
TseI GCWGC 3 cut(s) 107, 110, 113
Tsp45I GTSAC 1 cut(s) 407
TspDTI ATGAA 2 cut(s) 443, 459
TspGWI ACGGA 1 cut(s) 304
TspRI CASTG 1 cut(s) 148
Tth111I GACNNNGTC 1 cut(s) 181
VpaK11BI GGWCC 3 cut(s) 10, 177, 320
XmnI GAANNNNTTC 1 cut(s) 434
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.