pycom02g08460

General transcription factor IIF subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Reverse (-)
5890204 .. 5891261
1058 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 243 bp
ATGCCAGGACTTTACTTATTAGTGGTGCATATTTCCGTCAACCTTTATACATACTTGCATGCTGAGAACTGTGGTAGAAGATTACTGGAGAAAAAGAAGATGCCAACGAAGGGGTCAGACATGAAAAGTACAAGGAAGAACCGCGGAGAAATGGAGGATATTATGTTTAATCGCTTTGAACAAAAACCAAGTCAGCCGTTACCGATGGTAGTTGTAAACAAGAATGTAAAATGCCATCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0000377 GO:0000398 GO:0000428 GO:0000988 GO:0000990 GO:0000991 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005674 GO:0005856 GO:0006139 GO:0006351 GO:0006352 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006368 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0008150 GO:0008152 GO:0008380 GO:0008543 GO:0009058 GO:0009059 GO:0009301 GO:0009452 GO:0009719 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0015630 GO:0016070 GO:0016071 GO:0016073 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023052 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0031974 GO:0031981 GO:0032774 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0032993 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0036260 GO:0042221 GO:0042795 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044344 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0055029 GO:0060255 GO:0060260 GO:0060261 GO:0061695 GO:0065007 GO:0070013 GO:0070848 GO:0070887 GO:0071310 GO:0071363 GO:0071495 GO:0071704 GO:0071774 GO:0080090 GO:0090304 GO:0090575 GO:0097550 GO:0097659 GO:0098781 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

81

Amino Acids

9.36

Weight (kDa)

9.74

Isoelectric Point (pI)

52.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 144
AciI CCGC 2 cut(s) 142, 144
AfaI GTAC 1 cut(s) 130
AfiI CCNNNNNNNGG 1 cut(s) 110
AgsI TTSAA 1 cut(s) 179
AjnI CCWGG 1 cut(s) 4
ArsI GACNNNNNNTTYG 2 cut(s) 175, 207
BccI CCATC 1 cut(s) 199
BceAI ACGGC 1 cut(s) 181
BciT130I CCWGG 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 6
BmsI GCATC 1 cut(s) 90
BpmI CTGGAG 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 142
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 90
BseBI CCWGG 1 cut(s) 6
BseDI CCNNGG 1 cut(s) 142
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 1 cut(s) 90
Bsh1236I CGCG 1 cut(s) 144
BslI CCNNNNNNNGG 1 cut(s) 110
BspACI CCGC 2 cut(s) 142, 144
BspCNI CTCAG 1 cut(s) 55
BspFNI CGCG 1 cut(s) 144
BsrI ACTGG 1 cut(s) 90
BssECI CCNNGG 1 cut(s) 142
Bst2UI CCWGG 1 cut(s) 6
Bst4CI ACNGT 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 60
BstDEI CTNAG 1 cut(s) 63
BstDSI CCRYGG 1 cut(s) 142
BstFNI CGCG 1 cut(s) 144
BstNI CCWGG 1 cut(s) 6
BstNSI RCATGY 1 cut(s) 62
BstSCI CCNGG 1 cut(s) 4
BstUI CGCG 1 cut(s) 144
BtgI CCRYGG 1 cut(s) 142
Cac8I GCNNGC 1 cut(s) 60
Cfr42I CCGCGG 1 cut(s) 145
Csp6I GTAC 1 cut(s) 129
CviAII CATG 2 cut(s) 59, 121
CviJI RGCY 1 cut(s) 196
CviKI_1 RGCY 1 cut(s) 196
CviQI GTAC 1 cut(s) 129
DdeI CTNAG 1 cut(s) 63
EcoRII CCWGG 1 cut(s) 4
FaeI CATG 2 cut(s) 62, 124
FaiI YATR 6 cut(s) 30, 48, 52, 60, 122, 164
FatI CATG 2 cut(s) 58, 120
GsuI CTGGAG 1 cut(s) 107
Hin1II CATG 2 cut(s) 62, 124
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
Hpy166II GTNNAC 2 cut(s) 40, 217
Hpy188I TCNGA 1 cut(s) 118
Hpy8I GTNNAC 2 cut(s) 40, 217
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 1 cut(s) 71
HpyCH4V TGCA 2 cut(s) 28, 58
HpyF3I CTNAG 1 cut(s) 63
Hsp92II CATG 2 cut(s) 62, 124
KspI CCGCGG 1 cut(s) 145
LpnPI CCDG 2 cut(s) 18, 71
LweI GCATC 1 cut(s) 90
MaeIII GTNAC 1 cut(s) 198
MboII GAAGA 3 cut(s) 90, 109, 148
MnlI CCTC 1 cut(s) 148
MseI TTAA 1 cut(s) 168
MspA1I CMGCKG 1 cut(s) 144
MspR9I CCNGG 1 cut(s) 6
MvaI CCWGG 1 cut(s) 6
MvnI CGCG 1 cut(s) 144
NlaIII CATG 2 cut(s) 62, 124
NspI RCATGY 1 cut(s) 62
PaeI GCATGC 1 cut(s) 62
Psp6I CCWGG 1 cut(s) 4
PspGI CCWGG 1 cut(s) 4
RsaI GTAC 1 cut(s) 130
RsaNI GTAC 1 cut(s) 129
SacII CCGCGG 1 cut(s) 145
SaqAI TTAA 1 cut(s) 168
ScrFI CCNGG 1 cut(s) 6
SetI ASST 1 cut(s) 45
SfaNI GCATC 1 cut(s) 90
Sfr303I CCGCGG 1 cut(s) 145
SgrBI CCGCGG 1 cut(s) 145
SphI GCATGC 1 cut(s) 62
SsiI CCGC 2 cut(s) 142, 144
StyD4I CCNGG 1 cut(s) 4
TaaI ACNGT 1 cut(s) 71
TatI WGTACW 1 cut(s) 128
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TspDTI ATGAA 1 cut(s) 137
TspGWI ACGGA 1 cut(s) 25
XceI RCATGY 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.