Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

5921494 .. 5922303

Gene Structure 810 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGAATGTTATCAATCATTTCCCAGCAGACTCTGATCGACAGCATTCAACACGCGCCTTTCTCTATGCAATGACCAAACCCAATCCACAACGATTGGAACCCTCCCATTTTGGTCCATGGCCGCTGTCGGACTCGCACGTGGCTTTCCCCGTGTGGAAGCACTCAGGGGCTATGTACCCCATCGTGCCTGGGACACCCTTGAGCTTGGCGTACGAGGTCTTCTCGTTGTCCAGGGCATGTGCGAGGCCAAAGTCCCCGAGGCGAGAGTTGAAGTTAGAGTCTAGCATTATGTTGCTAGCATGTCAATGTATTAACTCAAAATTAATAAAGGGTATCCAAGGATTTATATGCCCTGCTCTTGGTGGGATCATGCTTTCAATTGGAATCAAACTTTCGATTGATGATTTTGTCCTTGCATTCAAAAGATCTTTACCACTCTCTGTTGGGTTTATCGCCCAGTATGTGCTGAAACCAGTACTTGGGGTACTAACTGCAAATATATTTGGCGTGCCGAGGATGTTCTACGCTGGCTTTGTTCTCACCGCTTATGTTGCAGGGGCTCAGCTGTCTAGCTACGCTAGTTTCTTGAGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF

Protein Analysis

199

Amino Acids

21.72

Weight (kDa)

9.69

Isoelectric Point (pI)

40.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBF	PF01758	118 - 198	3.5e-11	Sodium Bile acid symporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	479
AccII	CGCG	1 cut(s)	54
AciI	CCGC	2 cut(s)	122, 543
AclWI	GGATC	1 cut(s)	374
AcoI	YGGCCR	1 cut(s)	119
AcvI	CACGTG	1 cut(s)	139
AfaI	GTAC	4 cut(s)	176, 212, 477, 486
AfiI	CCNNNNNNNGG	2 cut(s)	359, 479
AgsI	TTSAA	4 cut(s)	48, 271, 378, 421
AjnI	CCWGG	2 cut(s)	187, 230
AluBI	AGCT	3 cut(s)	204, 565, 573
AluI	AGCT	3 cut(s)	204, 565, 573
AlwI	GGATC	1 cut(s)	374
AlwNI	CAGNNNCTG	1 cut(s)	32
Ama87I	CYCGRG	1 cut(s)	256
AoxI	GGCC	2 cut(s)	119, 245
AseI	ATTAAT	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	532
AsuNHI	GCTAGC	1 cut(s)	295
AvaI	CYCGRG	1 cut(s)	256
AvaII	GGWCC	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	562
BarI	GAAGNNNNNNTAC	2 cut(s)	203, 235
BbrPI	CACGTG	1 cut(s)	139
BbsI	GAAGAC	1 cut(s)	211
BccI	CCATC	1 cut(s)	188
BciT130I	CCWGG	2 cut(s)	189, 232
BciVI	GTATCC	1 cut(s)	344
BfaI	CTAG	4 cut(s)	282, 296, 570, 579
BfuI	GTATCC	1 cut(s)	344
BglII	AGATCT	1 cut(s)	425
BisI	GCNGC	1 cut(s)	122
BlpI	GCTNAGC	1 cut(s)	561
BlsI	GCNGC	1 cut(s)	123
BmcAI	AGTACT	1 cut(s)	477
Bme1390I	CCNGG	2 cut(s)	189, 232
Bme18I	GGWCC	1 cut(s)	113
BmeT110I	CYCGRG	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	1 cut(s)	99
BmrFI	CCNGG	2 cut(s)	189, 232
BmrI	ACTGGG	1 cut(s)	451
BmtI	GCTAGC	1 cut(s)	299
BmuI	ACTGGG	1 cut(s)	451
BpiI	GAAGAC	1 cut(s)	211
BplI	GAGNNNNNCTC	2 cut(s)	206, 238
Bpu1102I	GCTNAGC	1 cut(s)	561
BpuEI	CTTGAG	1 cut(s)	220
BsaAI	YACGTR	1 cut(s)	139
BsaJI	CCNNGG	6 cut(s)	116, 188, 231, 257, 337, 512
Bsc4I	CCNNNNNNNGG	2 cut(s)	359, 479
Bse1I	ACTGG	2 cut(s)	457, 473
Bse3DI	GCAATG	1 cut(s)	75
BseBI	CCWGG	2 cut(s)	189, 232
BseDI	CCNNGG	6 cut(s)	116, 188, 231, 257, 337, 512
BseGI	GGATG	1 cut(s)	522
BseLI	CCNNNNNNNGG	2 cut(s)	359, 479
BseMI	GCAATG	1 cut(s)	75
BseMII	CTCAG	2 cut(s)	177, 575
BseNI	ACTGG	2 cut(s)	457, 473
BseYI	CCCAGC	1 cut(s)	22
Bsh1236I	CGCG	1 cut(s)	54
BshFI	GGCC	2 cut(s)	121, 247
BsiHKCI	CYCGRG	1 cut(s)	256
BsiWI	CGTACG	1 cut(s)	210
BslFI	GGGAC	2 cut(s)	205, 238
BslI	CCNNNNNNNGG	2 cut(s)	359, 479
BsmFI	GGGAC	2 cut(s)	205, 238
BsmI	GAATGC	2 cut(s)	43, 416
BsnI	GGCC	2 cut(s)	121, 247
BsoBI	CYCGRG	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	562
Bsp143I	GATC	3 cut(s)	34, 366, 425
Bsp1720I	GCTNAGC	1 cut(s)	561
Bsp19I	CCATGG	1 cut(s)	116
BspACI	CCGC	2 cut(s)	122, 543
BspANI	GGCC	2 cut(s)	121, 247
BspCNI	CTCAG	2 cut(s)	176, 574
BspFNI	CGCG	1 cut(s)	54
BspLI	GGNNCC	1 cut(s)	99
BspOI	GCTAGC	1 cut(s)	299
BspPI	GGATC	1 cut(s)	374
BsrDI	GCAATG	1 cut(s)	75
BsrI	ACTGG	2 cut(s)	457, 473
BssECI	CCNNGG	6 cut(s)	116, 188, 231, 257, 337, 512
BssMI	GATC	3 cut(s)	34, 366, 425
BssT1I	CCWWGG	2 cut(s)	116, 337
Bst2UI	CCWGG	2 cut(s)	189, 232
BstBAI	YACGTR	1 cut(s)	139
BstC8I	GCNNGC	3 cut(s)	297, 509, 529
BstDEI	CTNAG	2 cut(s)	163, 561
BstDSI	CCRYGG	1 cut(s)	116
BstF5I	GGATG	1 cut(s)	522
BstFNI	CGCG	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	3 cut(s)	37, 369, 428
BstMBI	GATC	3 cut(s)	34, 366, 425
BstMWI	GCNNNNNNNGC	1 cut(s)	551
BstNI	CCWGG	2 cut(s)	189, 232
BstNSI	RCATGY	2 cut(s)	240, 303
BstSCI	CCNGG	2 cut(s)	187, 230
BstUI	CGCG	1 cut(s)	54
BstV2I	GAAGAC	1 cut(s)	211
BstX2I	RGATCY	1 cut(s)	425
BstYI	RGATCY	1 cut(s)	425
BsuI	GTATCC	1 cut(s)	344
BsuRI	GGCC	2 cut(s)	121, 247
BtgI	CCRYGG	1 cut(s)	116
BtsCI	GGATG	1 cut(s)	522
Cac8I	GCNNGC	3 cut(s)	297, 509, 529
CaiI	CAGNNNCTG	1 cut(s)	32
CfoI	GCGC	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	113
Csp6I	GTAC	4 cut(s)	175, 211, 476, 485
CspCI	CAANNNNNGTGG	2 cut(s)	75, 110
CviAII	CATG	4 cut(s)	117, 237, 300, 370
CviJI	RGCY	9 cut(s)	121, 143, 170, 204, 247, 531, 560, 565, 573
CviKI_1	RGCY	9 cut(s)	121, 143, 170, 204, 247, 531, 560, 565, 573
CviQI	GTAC	4 cut(s)	175, 211, 476, 485
DdeI	CTNAG	2 cut(s)	163, 561
DpnI	GATC	3 cut(s)	36, 368, 427
DpnII	GATC	3 cut(s)	34, 366, 425
EaeI	YGGCCR	1 cut(s)	119
Eco130I	CCWWGG	2 cut(s)	116, 337
Eco24I	GRGCYC	1 cut(s)	562
Eco47I	GGWCC	1 cut(s)	113
Eco72I	CACGTG	1 cut(s)	139
Eco88I	CYCGRG	1 cut(s)	256
EcoRII	CCWGG	2 cut(s)	187, 230
EcoT14I	CCWWGG	2 cut(s)	116, 337
EcoT38I	GRGCYC	1 cut(s)	562
ErhI	CCWWGG	2 cut(s)	116, 337
FaeI	CATG	4 cut(s)	120, 240, 303, 373
FaqI	GGGAC	2 cut(s)	205, 238
FatI	CATG	4 cut(s)	116, 236, 299, 369
Fnu4HI	GCNGC	1 cut(s)	122
FokI	GGATG	1 cut(s)	529
FriOI	GRGCYC	1 cut(s)	562
Fsp4HI	GCNGC	1 cut(s)	122
FspBI	CTAG	4 cut(s)	282, 296, 570, 579
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	1 cut(s)	122
GsaI	CCCAGC	1 cut(s)	26
HaeIII	GGCC	2 cut(s)	121, 247
HhaI	GCGC	1 cut(s)	56
Hin1II	CATG	4 cut(s)	120, 240, 303, 373
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HinfI	GANTC	4 cut(s)	29, 131, 278, 384
HphI	GGTGA	1 cut(s)	532
Hpy188I	TCNGA	2 cut(s)	34, 130
Hpy188III	TCNNGA	1 cut(s)	586
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	4 cut(s)	68, 416, 494, 554
HpyF10VI	GCNNNNNNNGC	1 cut(s)	551
HpyF3I	CTNAG	2 cut(s)	163, 561
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	4 cut(s)	120, 240, 303, 373
HspAI	GCGC	1 cut(s)	54
Kzo9I	GATC	3 cut(s)	34, 366, 425
MaeI	CTAG	4 cut(s)	282, 296, 570, 579
MaeII	ACGT	1 cut(s)	138
MalI	GATC	3 cut(s)	36, 368, 427
MboI	GATC	3 cut(s)	34, 366, 425
MboII	GAAGA	1 cut(s)	211
MfeI	CAATTG	1 cut(s)	378
MflI	RGATCY	1 cut(s)	425
MhlI	GDGCHC	1 cut(s)	562
MluCI	AATT	2 cut(s)	320, 378
MlyI	GAGTC	3 cut(s)	23, 125, 287
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	5 cut(s)	112, 208, 237, 252, 507
MseI	TTAA	2 cut(s)	312, 323
MslI	CAYNNNNRTG	1 cut(s)	304
MspA1I	CMGCKG	2 cut(s)	124, 565
MspR9I	CCNGG	2 cut(s)	189, 232
MunI	CAATTG	1 cut(s)	378
Mva1269I	GAATGC	2 cut(s)	43, 416
MvaI	CCWGG	2 cut(s)	189, 232
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	1 cut(s)	551
NcoI	CCATGG	1 cut(s)	116
NdeII	GATC	3 cut(s)	34, 366, 425
NheI	GCTAGC	1 cut(s)	295
NlaIII	CATG	4 cut(s)	120, 240, 303, 373
NlaIV	GGNNCC	1 cut(s)	99
NmeAIII	GCCGAG	1 cut(s)	537
NspI	RCATGY	2 cut(s)	240, 303
PctI	GAATGC	2 cut(s)	43, 416
PfeI	GAWTC	1 cut(s)	384
Pfl23II	CGTACG	1 cut(s)	210
PflMI	CCANNNNNTGG	1 cut(s)	479
PkrI	GCNGC	1 cut(s)	123
PleI	GAGTC	3 cut(s)	23, 125, 286
PmaCI	CACGTG	1 cut(s)	139
PmlI	CACGTG	1 cut(s)	139
PpsI	GAGTC	3 cut(s)	23, 125, 286
Ppu21I	YACGTR	1 cut(s)	139
PshBI	ATTAAT	1 cut(s)	323
Psp6I	CCWGG	2 cut(s)	187, 230
PspCI	CACGTG	1 cut(s)	139
PspFI	CCCAGC	1 cut(s)	22
PspGI	CCWGG	2 cut(s)	187, 230
PspLI	CGTACG	1 cut(s)	210
PspN4I	GGNNCC	1 cut(s)	99
PspPI	GGNCC	1 cut(s)	113
PstNI	CAGNNNCTG	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	425
PvuII	CAGCTG	1 cut(s)	565
RsaI	GTAC	4 cut(s)	176, 212, 477, 486
RsaNI	GTAC	4 cut(s)	175, 211, 476, 485
RseI	CAYNNNNRTG	1 cut(s)	304
SaqAI	TTAA	2 cut(s)	312, 323
SatI	GCNGC	1 cut(s)	122
Sau3AI	GATC	3 cut(s)	34, 366, 425
Sau96I	GGNCC	1 cut(s)	113
ScaI	AGTACT	1 cut(s)	477
SchI	GAGTC	3 cut(s)	23, 125, 287
ScrFI	CCNGG	2 cut(s)	189, 232
SduI	GDGCHC	1 cut(s)	562
SetI	ASST	5 cut(s)	141, 206, 219, 567, 575
SinI	GGWCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	304
SmlI	CTYRAG	2 cut(s)	199, 586
SmoI	CTYRAG	2 cut(s)	199, 586
Sse9I	AATT	2 cut(s)	320, 378
SsiI	CCGC	2 cut(s)	122, 543
SspMI	CTAG	4 cut(s)	282, 296, 570, 579
StyD4I	CCNGG	2 cut(s)	187, 230
StyI	CCWWGG	2 cut(s)	116, 337
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	2 cut(s)	37, 395
TasI	AATT	2 cut(s)	320, 378
TatI	WGTACW	1 cut(s)	475
TauI	GCSGC	1 cut(s)	124
TfiI	GAWTC	1 cut(s)	384
Tru1I	TTAA	2 cut(s)	312, 323
Tru9I	TTAA	2 cut(s)	312, 323
TspDTI	ATGAA	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	479
VpaK11BI	GGWCC	1 cut(s)	113
VspI	ATTAAT	1 cut(s)	323
XceI	RCATGY	2 cut(s)	240, 303
XspI	CTAG	4 cut(s)	282, 296, 570, 579
ZrmI	AGTACT	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.