pycom02g08810

regulation of response to stimulus

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
N/A
Physical Location & Seq
Forward (+)
6076003 .. 6076564
562 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 465 bp
ATGGAAGTTCCAAGGAAGGTGGTTCTCCTTTTAACTCCATCACATTCACATTCTGGAGAGATTTTTTTTAGTGTGATCGTCACAATAGGTGGTACATCACTAATATTTTCCATCACTTGCATAAAAACACGTGCTGTACTATTCGTATTTCCGTCACAACTAAAAATTTCTATAGGAAGCTACTTCCTACATAGGAAGAAAAAGCATGCAAAAGTCCTATTTAACCAAAGCGAATTCTTGGCTCTTCAATTTACTCAATTCTTTGTAAGGCTCTTGAACTTGTCTCTTCTTCCTTCTTGGAAGTACGATGTCTTTTTGAGCTTCAAAGGAGAGGATACACGAACCAATTTTACAGATAATTTTTACAAGGCGTTGGACAACAAGAGAATCAACACTTTCATTGATCACCATCTTAGAAGAGGAGAAGAAATATCTCCGACTCTTCTCAAAGCAATTGAAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.82

Weight (kDa)

9.9

Isoelectric Point (pI)

34.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 101 - 154 1.3e-14 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 165, 233
AcvI CACGTG 1 cut(s) 131
AfaI GTAC 3 cut(s) 94, 138, 305
AflIII ACRYGT 1 cut(s) 128
AgsI TTSAA 4 cut(s) 248, 277, 325, 458
AluBI AGCT 2 cut(s) 180, 321
AluI AGCT 2 cut(s) 180, 321
Alw26I GTCTC 1 cut(s) 288
ApoI RAATTY 2 cut(s) 165, 233
AsuHPI GGTGA 1 cut(s) 398
BbrPI CACGTG 1 cut(s) 131
BccI CCATC 3 cut(s) 46, 119, 417
BciVI GTATCC 1 cut(s) 328
BclI TGATCA 1 cut(s) 403
BcoDI GTCTC 1 cut(s) 288
BfmI CTRYAG 1 cut(s) 171
BfuI GTATCC 1 cut(s) 328
BpmI CTGGAG 1 cut(s) 75
BsaAI YACGTR 1 cut(s) 131
BsaBI GATNNNNATC 1 cut(s) 408
BsaJI CCNNGG 1 cut(s) 11
Bse8I GATNNNNATC 1 cut(s) 408
BseDI CCNNGG 1 cut(s) 11
BseJI GATNNNNATC 1 cut(s) 408
BseRI GAGGAG 1 cut(s) 435
BsmAI GTCTC 1 cut(s) 288
Bsp143I GATC 2 cut(s) 75, 403
BspQI GCTCTTC 1 cut(s) 249
BssECI CCNNGG 1 cut(s) 11
BssMI GATC 2 cut(s) 75, 403
BssT1I CCWWGG 1 cut(s) 11
Bst6I CTCTTC 4 cut(s) 249, 291, 412, 447
BstBAI YACGTR 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 1 cut(s) 413
BstKTI GATC 2 cut(s) 78, 406
BstMAI GTCTC 1 cut(s) 288
BstMBI GATC 2 cut(s) 75, 403
BstNSI RCATGY 1 cut(s) 209
BstSFI CTRYAG 1 cut(s) 171
BsuI GTATCC 1 cut(s) 328
Cac8I GCNNGC 1 cut(s) 207
Csp6I GTAC 3 cut(s) 93, 137, 304
CspCI CAANNNNNGTGG 1 cut(s) 35
CviAII CATG 1 cut(s) 206
CviJI RGCY 4 cut(s) 180, 242, 271, 321
CviKI_1 RGCY 4 cut(s) 180, 242, 271, 321
CviQI GTAC 3 cut(s) 93, 137, 304
DdeI CTNAG 1 cut(s) 413
DpnI GATC 2 cut(s) 77, 405
DpnII GATC 2 cut(s) 75, 403
Eam1104I CTCTTC 4 cut(s) 249, 291, 412, 447
EarI CTCTTC 4 cut(s) 249, 291, 412, 447
Eco130I CCWWGG 1 cut(s) 11
Eco72I CACGTG 1 cut(s) 131
EcoRI GAATTC 1 cut(s) 233
EcoT14I CCWWGG 1 cut(s) 11
ErhI CCWWGG 1 cut(s) 11
FaeI CATG 1 cut(s) 209
FaiI YATR 4 cut(s) 122, 173, 192, 207
FatI CATG 1 cut(s) 205
FbaI TGATCA 1 cut(s) 403
GsuI CTGGAG 1 cut(s) 75
Hin1II CATG 1 cut(s) 209
HinfI GANTC 2 cut(s) 387, 439
HphI GGTGA 1 cut(s) 398
Hpy188I TCNGA 1 cut(s) 438
Hpy188III TCNNGA 2 cut(s) 54, 274
HpyAV CCTTC 2 cut(s) 10, 303
HpyCH4IV ACGT 1 cut(s) 130
HpyCH4V TGCA 2 cut(s) 120, 209
HpyF3I CTNAG 1 cut(s) 413
HpySE526I ACGT 1 cut(s) 130
Hsp92II CATG 1 cut(s) 209
Ksp22I TGATCA 1 cut(s) 403
Kzo9I GATC 2 cut(s) 75, 403
LguI GCTCTTC 1 cut(s) 249
LpnPI CCDG 1 cut(s) 39
MaeII ACGT 1 cut(s) 130
MaeIII GTNAC 2 cut(s) 79, 153
MalI GATC 2 cut(s) 77, 405
MboI GATC 2 cut(s) 75, 403
MboII GAAGA 7 cut(s) 208, 236, 278, 281, 429, 434, 437
MfeI CAATTG 1 cut(s) 453
MluCI AATT 7 cut(s) 165, 233, 248, 257, 346, 358, 453
MlyI GAGTC 1 cut(s) 433
MmeI TCCRAC 2 cut(s) 354, 461
MnlI CCTC 2 cut(s) 325, 413
MseI TTAA 2 cut(s) 32, 222
MunI CAATTG 1 cut(s) 453
NdeII GATC 2 cut(s) 75, 403
NlaIII CATG 1 cut(s) 209
NmuCI GTSAC 2 cut(s) 79, 153
NspI RCATGY 1 cut(s) 209
PaeI GCATGC 1 cut(s) 209
PciSI GCTCTTC 1 cut(s) 249
PfeI GAWTC 1 cut(s) 387
PleI GAGTC 1 cut(s) 433
PmaCI CACGTG 1 cut(s) 131
PmlI CACGTG 1 cut(s) 131
PpsI GAGTC 1 cut(s) 433
Ppu21I YACGTR 1 cut(s) 131
PspCI CACGTG 1 cut(s) 131
PsrI GAACNNNNNNTAC 2 cut(s) 334, 366
RsaI GTAC 3 cut(s) 94, 138, 305
RsaNI GTAC 3 cut(s) 93, 137, 304
SapI GCTCTTC 1 cut(s) 249
SaqAI TTAA 2 cut(s) 32, 222
Sau3AI GATC 2 cut(s) 75, 403
SchI GAGTC 1 cut(s) 433
SetI ASST 5 cut(s) 21, 91, 133, 182, 323
SfcI CTRYAG 1 cut(s) 171
SphI GCATGC 1 cut(s) 209
Sse9I AATT 7 cut(s) 165, 233, 248, 257, 346, 358, 453
SspI AATATT 1 cut(s) 105
StyI CCWWGG 1 cut(s) 11
TaiI ACGT 1 cut(s) 133
TasI AATT 7 cut(s) 165, 233, 248, 257, 346, 358, 453
TatI WGTACW 1 cut(s) 136
TfiI GAWTC 1 cut(s) 387
Tru1I TTAA 2 cut(s) 32, 222
Tru9I TTAA 2 cut(s) 32, 222
TseFI GTSAC 2 cut(s) 79, 153
Tsp45I GTSAC 2 cut(s) 79, 153
TspDTI ATGAA 1 cut(s) 388
TspGWI ACGGA 1 cut(s) 141
XapI RAATTY 2 cut(s) 165, 233
XceI RCATGY 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.