Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

6162461 .. 6163042

Gene Structure 582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGTGGGGTTTGACAAAGAAGCCGGCTCCTCCACCAACACCCTCCCGCCCTTCCCCCGGGAAGATACTCCTCTCCTCTCCAAACCCAGCAAGCTCTCCTCCCAACCCAAGACCTTCGCCAACGTCTTCATCGCCATCGTCGGCTCCGGCGTGCTGGGTCTACCCTACACCTTCAAGAAAACCGGCTGGGTCTTCGGCTCCCTCATGCTCTTCTCCGTCGCCTTCCTCACCTACCACTGTATGATGCTCCTAATCCACACCCGCCGCAAGCTTGACTCCCTCCACGGCGGCGGCCTCTCAAAGATCGATCGCGTCTTTCGGCGACCTGGGCTTCGCCGTCTGCGGCCCAGTCGGCCGGTTCTCCGTCGACGTCATGATCGTCCTCGCCCAGGCCGGGTTCTGCGTCAGCTACCTAATCTTCATATCAAACACTTTAGCCTTCGTCTTCAATTACTCCGGGCCGGACCGGATTCTTGGTCTGACCCCAAAATCAATCTACCTCTGGGGATGTTTCCCATTCCAGCTGGGTCTGAATTCGATTCCAACCCTGACCCATCTCGCCCCTCTGAGCATTTTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015173 GO:0015175 GO:0015318 GO:0015711 GO:0015801 GO:0015804 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

194

Amino Acids

21.83

Weight (kDa)

11.43

Isoelectric Point (pI)

62.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	34 - 92	1.6e-15	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	373
AccI	GTMKAC	2 cut(s)	160, 367
AccII	CGCG	1 cut(s)	312
AciI	CCGC	6 cut(s)	47, 262, 265, 288, 291, 343
AcoI	YGGCCR	1 cut(s)	353
AcsI	RAATTY	1 cut(s)	533
AcyI	GRCGYC	1 cut(s)	370
AfiI	CCNNNNNNNGG	3 cut(s)	57, 389, 394
AgsI	TTSAA	2 cut(s)	175, 449
AjnI	CCWGG	2 cut(s)	325, 388
AluBI	AGCT	4 cut(s)	94, 271, 409, 524
AluI	AGCT	4 cut(s)	94, 271, 409, 524
Ama87I	CYCGRG	1 cut(s)	57
AoxI	GGCC	5 cut(s)	292, 344, 353, 391, 459
ApoI	RAATTY	1 cut(s)	533
ArsI	GACNNNNNNTTYG	2 cut(s)	315, 347
AspS9I	GGNCC	3 cut(s)	345, 459, 464
AsuC2I	CCSGG	4 cut(s)	58, 59, 395, 458
AsuHPI	GGTGA	1 cut(s)	220
AvaI	CYCGRG	1 cut(s)	57
AvaII	GGWCC	1 cut(s)	464
BbsI	GAAGAC	3 cut(s)	118, 184, 437
BccI	CCATC	2 cut(s)	143, 562
BceAI	ACGGC	2 cut(s)	301, 321
BciT130I	CCWGG	2 cut(s)	327, 390
BcnI	CCSGG	4 cut(s)	58, 59, 395, 458
BglI	GCCNNNNNGGC	1 cut(s)	352
BisI	GCNGC	4 cut(s)	265, 289, 292, 344
BlsI	GCNGC	4 cut(s)	266, 290, 293, 345
Bme1390I	CCNGG	6 cut(s)	58, 59, 327, 390, 395, 458
Bme18I	GGWCC	1 cut(s)	464
BmeT110I	CYCGRG	1 cut(s)	57
BmgT120I	GGNCC	3 cut(s)	345, 459, 464
BmiI	GGNNCC	3 cut(s)	28, 145, 199
BmrFI	CCNGG	6 cut(s)	58, 59, 327, 390, 395, 458
BmrI	ACTGGG	1 cut(s)	342
BmsI	GCATC	1 cut(s)	234
BmuI	ACTGGG	1 cut(s)	342
BpiI	GAAGAC	3 cut(s)	118, 184, 437
BpuMI	CCSGG	4 cut(s)	58, 59, 395, 458
Bsa29I	ATCGAT	1 cut(s)	306
BsaHI	GRCGYC	1 cut(s)	370
BsaJI	CCNNGG	5 cut(s)	56, 57, 283, 326, 388
BsaWI	WCCGGW	1 cut(s)	466
Bsc4I	CCNNNNNNNGG	3 cut(s)	57, 389, 394
Bse118I	RCCGGY	3 cut(s)	23, 182, 355
Bse1I	ACTGG	1 cut(s)	348
BseBI	CCWGG	2 cut(s)	327, 390
BseCI	ATCGAT	1 cut(s)	306
BseDI	CCNNGG	5 cut(s)	56, 57, 283, 326, 388
BseGI	GGATG	1 cut(s)	513
BseLI	CCNNNNNNNGG	3 cut(s)	57, 389, 394
BseMII	CTCAG	1 cut(s)	558
BseNI	ACTGG	1 cut(s)	348
BseRI	GAGGAG	4 cut(s)	19, 60, 65, 88
BseX3I	CGGCCG	1 cut(s)	353
BseYI	CCCAGC	4 cut(s)	86, 154, 186, 524
Bsh1236I	CGCG	1 cut(s)	312
Bsh1285I	CGRYCG	2 cut(s)	310, 356
BshFI	GGCC	5 cut(s)	294, 346, 355, 393, 461
BshVI	ATCGAT	1 cut(s)	306
BsiEI	CGRYCG	2 cut(s)	310, 356
BsiHKCI	CYCGRG	1 cut(s)	57
BsiSI	CCGG	9 cut(s)	24, 58, 147, 183, 356, 394, 457, 462, 467
BslI	CCNNNNNNNGG	3 cut(s)	57, 389, 394
BsnI	GGCC	5 cut(s)	294, 346, 355, 393, 461
BsoBI	CYCGRG	1 cut(s)	57
Bsp143I	GATC	3 cut(s)	303, 307, 376
BspACI	CCGC	6 cut(s)	47, 262, 265, 288, 291, 343
BspANI	GGCC	5 cut(s)	294, 346, 355, 393, 461
BspCNI	CTCAG	1 cut(s)	559
BspDI	ATCGAT	1 cut(s)	306
BspFNI	CGCG	1 cut(s)	312
BspHI	TCATGA	1 cut(s)	373
BspLI	GGNNCC	3 cut(s)	28, 145, 199
BspQI	GCTCTTC	1 cut(s)	215
BsrFI	RCCGGY	3 cut(s)	23, 182, 355
BsrI	ACTGG	1 cut(s)	348
BssAI	RCCGGY	3 cut(s)	23, 182, 355
BssECI	CCNNGG	5 cut(s)	56, 57, 283, 326, 388
BssMI	GATC	3 cut(s)	303, 307, 376
BssNI	GRCGYC	1 cut(s)	370
Bst2UI	CCWGG	2 cut(s)	327, 390
Bst4CI	ACNGT	1 cut(s)	239
Bst6I	CTCTTC	1 cut(s)	215
BstACI	GRCGYC	1 cut(s)	370
BstC8I	GCNNGC	4 cut(s)	25, 92, 152, 269
BstDEI	CTNAG	1 cut(s)	567
BstDSI	CCRYGG	1 cut(s)	283
BstENI	CCTNNNNNAGG	1 cut(s)	387
BstF5I	GGATG	1 cut(s)	513
BstFNI	CGCG	1 cut(s)	312
BstKTI	GATC	3 cut(s)	306, 310, 379
BstMBI	GATC	3 cut(s)	303, 307, 376
BstMCI	CGRYCG	2 cut(s)	310, 356
BstMWI	GCNNNNNNNGC	2 cut(s)	328, 352
BstNI	CCWGG	2 cut(s)	327, 390
BstSCI	CCNGG	6 cut(s)	56, 57, 325, 388, 393, 456
BstUI	CGCG	1 cut(s)	312
BstV2I	GAAGAC	3 cut(s)	118, 184, 437
BstZI	CGGCCG	1 cut(s)	353
Bsu15I	ATCGAT	1 cut(s)	306
BsuRI	GGCC	5 cut(s)	294, 346, 355, 393, 461
BsuTUI	ATCGAT	1 cut(s)	306
BtgI	CCRYGG	1 cut(s)	283
BtgZI	GCGATG	1 cut(s)	115
BtsCI	GGATG	1 cut(s)	513
BtsIMutI	CAGTG	1 cut(s)	235
Cac8I	GCNNGC	4 cut(s)	25, 92, 152, 269
CciI	TCATGA	1 cut(s)	373
Cfr10I	RCCGGY	3 cut(s)	23, 182, 355
Cfr13I	GGNCC	3 cut(s)	345, 459, 464
Cfr9I	CCCGGG	1 cut(s)	57
ClaI	ATCGAT	1 cut(s)	306
CpoI	CGGWCCG	1 cut(s)	464
CseI	GACGC	2 cut(s)	301, 392
CspI	CGGWCCG	1 cut(s)	464
CviAII	CATG	2 cut(s)	205, 374
DdeI	CTNAG	1 cut(s)	567
DpnI	GATC	3 cut(s)	305, 309, 378
DpnII	GATC	3 cut(s)	303, 307, 376
EaeI	YGGCCR	1 cut(s)	353
EagI	CGGCCG	1 cut(s)	353
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
EclXI	CGGCCG	1 cut(s)	353
Eco47I	GGWCC	1 cut(s)	464
Eco52I	CGGCCG	1 cut(s)	353
Eco88I	CYCGRG	1 cut(s)	57
EcoNI	CCTNNNNNAGG	1 cut(s)	387
EcoRI	GAATTC	1 cut(s)	533
EcoRII	CCWGG	2 cut(s)	325, 388
FaeI	CATG	2 cut(s)	208, 377
FaiI	YATR	4 cut(s)	206, 242, 375, 423
FatI	CATG	2 cut(s)	204, 373
FauI	CCCGC	2 cut(s)	54, 269
FblI	GTMKAC	2 cut(s)	160, 367
Fnu4HI	GCNGC	4 cut(s)	265, 289, 292, 344
FokI	GGATG	1 cut(s)	520
Fsp4HI	GCNGC	4 cut(s)	265, 289, 292, 344
GluI	GCNGC	4 cut(s)	265, 289, 292, 344
GsaI	CCCAGC	4 cut(s)	90, 158, 190, 528
HaeIII	GGCC	5 cut(s)	294, 346, 355, 393, 461
HapII	CCGG	9 cut(s)	24, 58, 147, 183, 356, 394, 457, 462, 467
HgaI	GACGC	2 cut(s)	301, 392
Hin1I	GRCGYC	1 cut(s)	370
Hin1II	CATG	2 cut(s)	208, 377
HincII	GTYRAC	1 cut(s)	368
HindII	GTYRAC	1 cut(s)	368
HindIII	AAGCTT	1 cut(s)	269
HinfI	GANTC	3 cut(s)	275, 470, 539
HpaII	CCGG	9 cut(s)	24, 58, 147, 183, 356, 394, 457, 462, 467
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	2 cut(s)	161, 368
Hpy188I	TCNGA	3 cut(s)	481, 532, 568
Hpy188III	TCNNGA	2 cut(s)	175, 374
Hpy8I	GTNNAC	2 cut(s)	161, 368
Hpy99I	CGWCG	4 cut(s)	143, 221, 369, 372
HpyAV	CCTTC	5 cut(s)	61, 124, 181, 232, 449
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4IV	ACGT	2 cut(s)	123, 370
HpyF10VI	GCNNNNNNNGC	2 cut(s)	328, 352
HpyF3I	CTNAG	1 cut(s)	567
HpySE526I	ACGT	2 cut(s)	123, 370
Hsp92I	GRCGYC	1 cut(s)	370
Hsp92II	CATG	2 cut(s)	208, 377
KroI	GCCGGC	1 cut(s)	23
KroNI	GCCGGC	1 cut(s)	25
Kzo9I	GATC	3 cut(s)	303, 307, 376
LguI	GCTCTTC	1 cut(s)	215
LmnI	GCTCC	4 cut(s)	32, 149, 203, 252
LweI	GCATC	1 cut(s)	234
MaeII	ACGT	2 cut(s)	123, 370
MalI	GATC	3 cut(s)	305, 309, 378
MboI	GATC	3 cut(s)	303, 307, 376
MboII	GAAGA	6 cut(s)	74, 118, 184, 202, 410, 437
MluCI	AATT	2 cut(s)	449, 533
MlyI	GAGTC	1 cut(s)	269
MmeI	TCCRAC	1 cut(s)	567
MroNI	GCCGGC	1 cut(s)	23
MspA1I	CMGCKG	1 cut(s)	524
MspI	CCGG	9 cut(s)	24, 58, 147, 183, 356, 394, 457, 462, 467
MspR9I	CCNGG	6 cut(s)	58, 59, 327, 390, 395, 458
MvaI	CCWGG	2 cut(s)	327, 390
MvnI	CGCG	1 cut(s)	312
MwoI	GCNNNNNNNGC	2 cut(s)	328, 352
NaeI	GCCGGC	1 cut(s)	25
NciI	CCSGG	4 cut(s)	58, 59, 395, 458
NdeII	GATC	3 cut(s)	303, 307, 376
NgoMIV	GCCGGC	1 cut(s)	23
NlaIII	CATG	2 cut(s)	208, 377
NlaIV	GGNNCC	3 cut(s)	28, 145, 199
PagI	TCATGA	1 cut(s)	373
PciSI	GCTCTTC	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	2 cut(s)	147, 376
PdiI	GCCGGC	1 cut(s)	25
PfeI	GAWTC	2 cut(s)	470, 539
PkrI	GCNGC	4 cut(s)	266, 290, 293, 345
Ple19I	CGATCG	1 cut(s)	310
PleI	GAGTC	1 cut(s)	269
PpsI	GAGTC	1 cut(s)	269
Psp6I	CCWGG	2 cut(s)	325, 388
PspFI	CCCAGC	4 cut(s)	86, 154, 186, 524
PspGI	CCWGG	2 cut(s)	325, 388
PspN4I	GGNNCC	3 cut(s)	28, 145, 199
PspPI	GGNCC	3 cut(s)	345, 459, 464
PvuI	CGATCG	1 cut(s)	310
PvuII	CAGCTG	1 cut(s)	524
Rsr2I	CGGWCCG	1 cut(s)	464
RsrII	CGGWCCG	1 cut(s)	464
SalI	GTCGAC	1 cut(s)	366
SapI	GCTCTTC	1 cut(s)	215
SatI	GCNGC	4 cut(s)	265, 289, 292, 344
Sau3AI	GATC	3 cut(s)	303, 307, 376
Sau96I	GGNCC	3 cut(s)	345, 459, 464
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	6 cut(s)	58, 59, 327, 390, 395, 458
SfaNI	GCATC	1 cut(s)	234
SfiI	GGCCNNNNNGGCC	1 cut(s)	352
SgrDI	CGTCGACG	1 cut(s)	366
SinI	GGWCC	1 cut(s)	464
SmaI	CCCGGG	1 cut(s)	59
Sse9I	AATT	2 cut(s)	449, 533
SsiI	CCGC	6 cut(s)	47, 262, 265, 288, 291, 343
StyD4I	CCNGG	6 cut(s)	56, 57, 325, 388, 393, 456
TaaI	ACNGT	1 cut(s)	239
TaiI	ACGT	2 cut(s)	126, 373
TaqI	TCGA	3 cut(s)	306, 367, 537
TasI	AATT	2 cut(s)	449, 533
TauI	GCSGC	4 cut(s)	267, 291, 294, 346
TfiI	GAWTC	2 cut(s)	470, 539
TscAI	CASTG	1 cut(s)	242
TspDTI	ATGAA	2 cut(s)	118, 410
TspGWI	ACGGA	2 cut(s)	205, 353
TspMI	CCCGGG	1 cut(s)	57
TspRI	CASTG	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	464
XagI	CCTNNNNNAGG	1 cut(s)	387
XapI	RAATTY	1 cut(s)	533
XmaI	CCCGGG	1 cut(s)	57
XmiI	GTMKAC	2 cut(s)	160, 367
ZraI	GACGTC	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.