Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

6329501 .. 6329965

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGATGGAGAAGGCAGACTCTGGGCAGAAGCTGTACACACGAATGAGGCTGTGGGAGTTTCCGGATCAGGATGTGATCGAGCCCACTGATGGCTCTCAGGGCTCCTCTTTGGCAGTCAGTAGGGTCGACGGCTCTATGCAGCTCATTGGTGGGTTTTCTTTGTGTAAAAACCTTCACGTTTCATCTTGTGTATTTGAGATCGGCATCCTAATCTTTTCGCAATCGACATCATACACAAACCAATTCATTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005911 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009611 GO:0009628 GO:0009651 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0021700 GO:0022622 GO:0030054 GO:0030154 GO:0030258 GO:0030427 GO:0031520 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0034596 GO:0035618 GO:0035619 GO:0035838 GO:0040007 GO:0042175 GO:0042578 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043812 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044463 GO:0044464 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048856 GO:0048869 GO:0050896 GO:0051286 GO:0052744 GO:0052866 GO:0055044 GO:0060560 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090404 GO:0090406 GO:0090558 GO:0090627 GO:0098590 GO:0098827 GO:0099402 GO:0120025 GO:0120038 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Syja_N

Protein Analysis

85

Amino Acids

9.33

Weight (kDa)

4.79

Isoelectric Point (pI)

39.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	126
AccIII	TCCGGA	1 cut(s)	61
AclWI	GGATC	1 cut(s)	72
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	1 cut(s)	89
AluBI	AGCT	2 cut(s)	31, 142
AluI	AGCT	2 cut(s)	31, 142
AlwI	GGATC	1 cut(s)	72
AlwNI	CAGNNNCTG	2 cut(s)	20, 31
Aor13HI	TCCGGA	1 cut(s)	61
ApeKI	GCWGC	1 cut(s)	139
BanII	GRGCYC	2 cut(s)	84, 104
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	1 cut(s)	83
BceAI	ACGGC	1 cut(s)	145
BisI	GCNGC	1 cut(s)	140
BlsI	GCNGC	1 cut(s)	141
BmiI	GGNNCC	1 cut(s)	103
BmsI	GCATC	1 cut(s)	213
BsaBI	GATNNNNATC	1 cut(s)	203
BsaWI	WCCGGW	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse8I	GATNNNNATC	1 cut(s)	203
BseAI	TCCGGA	1 cut(s)	61
BseGI	GGATG	2 cut(s)	76, 204
BseJI	GATNNNNATC	1 cut(s)	203
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMII	CTCAG	1 cut(s)	110
BseRI	GAGGAG	1 cut(s)	94
BseXI	GCAGC	1 cut(s)	151
BsiSI	CCGG	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	89
Bsp1286I	GDGCHC	2 cut(s)	84, 104
Bsp13I	TCCGGA	1 cut(s)	61
Bsp1407I	TGTACA	1 cut(s)	33
Bsp143I	GATC	3 cut(s)	64, 75, 198
BspCNI	CTCAG	1 cut(s)	109
BspEI	TCCGGA	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	103
BspPI	GGATC	1 cut(s)	72
BsrGI	TGTACA	1 cut(s)	33
BssMI	GATC	3 cut(s)	64, 75, 198
BstAUI	TGTACA	1 cut(s)	33
BstDEI	CTNAG	1 cut(s)	96
BstF5I	GGATG	2 cut(s)	76, 204
BstKTI	GATC	3 cut(s)	67, 78, 201
BstMBI	GATC	3 cut(s)	64, 75, 198
BstMWI	GCNNNNNNNGC	1 cut(s)	99
BstV1I	GCAGC	1 cut(s)	151
BtsCI	GGATG	2 cut(s)	76, 204
BtsIMutI	CAGTG	1 cut(s)	84
CaiI	CAGNNNCTG	2 cut(s)	20, 31
Csp6I	GTAC	1 cut(s)	34
CviJI	RGCY	7 cut(s)	31, 49, 82, 93, 102, 132, 142
CviKI_1	RGCY	7 cut(s)	31, 49, 82, 93, 102, 132, 142
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	3 cut(s)	66, 77, 200
DpnII	GATC	3 cut(s)	64, 75, 198
Eco24I	GRGCYC	2 cut(s)	84, 104
EcoT38I	GRGCYC	2 cut(s)	84, 104
FaiI	YATR	3 cut(s)	137, 232, 253
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	1 cut(s)	140
FokI	GGATG	2 cut(s)	83, 191
FriOI	GRGCYC	2 cut(s)	84, 104
Fsp4HI	GCNGC	1 cut(s)	140
GluI	GCNGC	1 cut(s)	140
HapII	CCGG	1 cut(s)	62
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	1 cut(s)	17
HpaII	CCGG	1 cut(s)	62
Hpy166II	GTNNAC	2 cut(s)	36, 127
Hpy188III	TCNNGA	2 cut(s)	62, 68
Hpy8I	GTNNAC	2 cut(s)	36, 127
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	2 cut(s)	4, 182
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	1 cut(s)	139
HpyF10VI	GCNNNNNNNGC	1 cut(s)	99
HpyF3I	CTNAG	1 cut(s)	96
HpySE526I	ACGT	1 cut(s)	177
Kpn2I	TCCGGA	1 cut(s)	61
Kzo9I	GATC	3 cut(s)	64, 75, 198
LmnI	GCTCC	1 cut(s)	107
LpnPI	CCDG	4 cut(s)	6, 53, 75, 83
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	1 cut(s)	213
MaeII	ACGT	1 cut(s)	177
MalI	GATC	3 cut(s)	66, 77, 200
MboI	GATC	3 cut(s)	64, 75, 198
MhlI	GDGCHC	2 cut(s)	84, 104
MluCI	AATT	1 cut(s)	242
MlyI	GAGTC	1 cut(s)	11
MnlI	CCTC	2 cut(s)	39, 115
MroI	TCCGGA	1 cut(s)	61
MslI	CAYNNNNRTG	1 cut(s)	41
MspI	CCGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	1 cut(s)	99
NdeII	GATC	3 cut(s)	64, 75, 198
NlaIV	GGNNCC	1 cut(s)	103
PkrI	GCNGC	1 cut(s)	141
PleI	GAGTC	1 cut(s)	11
PpsI	GAGTC	1 cut(s)	11
PspN4I	GGNNCC	1 cut(s)	103
PstNI	CAGNNNCTG	2 cut(s)	20, 31
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
RseI	CAYNNNNRTG	1 cut(s)	41
SalI	GTCGAC	1 cut(s)	125
SatI	GCNGC	1 cut(s)	140
Sau3AI	GATC	3 cut(s)	64, 75, 198
SchI	GAGTC	1 cut(s)	11
SduI	GDGCHC	2 cut(s)	84, 104
SetI	ASST	4 cut(s)	33, 144, 174, 180
SfaNI	GCATC	1 cut(s)	213
SgeI	CNNG	8 cut(s)	33, 51, 74, 80, 91, 110, 188, 198
SmiMI	CAYNNNNRTG	1 cut(s)	41
Sse9I	AATT	1 cut(s)	242
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	3 cut(s)	78, 126, 224
TasI	AATT	1 cut(s)	242
TatI	WGTACW	1 cut(s)	33
TscAI	CASTG	1 cut(s)	91
TseI	GCWGC	1 cut(s)	139
TspDTI	ATGAA	2 cut(s)	171, 235
TspRI	CASTG	1 cut(s)	91
XmiI	GTMKAC	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.