Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

6690307 .. 6691942

Gene Structure 1636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGATTTTATTGCGCACCCATCACGTTTGCCTCCTTCCTATTCGTTTTCGTTGGGGAATTTCGTCGCACGGGTCAAGGATTTCTGCAACTTCGCCGTCTCTGCGGTTCTCGGGAACGTTTTCTCTGCGATCTTCACCTTCTTCTTTGCATTAGTGGGCACCACGTTAGGAGCAATGACTGGAGCTTTGATAGGGCAAGAAACTGAGAGTGGATTTGTGAGAGGAGCTGCAGTTGGAGCAATATCAGGAGCTGTTTTTTCAATTGAAGTGTTTGAATCTTCCCTTGTTCTTTGGCAATCAGATGAATCAGGAATTGGGTGTCTTCTGTATTTGATTGATGTCATTGCTAGTCTCCTAAGCGGTAGATTAGTCCGCGAGCGGATTGGCCCGGCCATGTTAAGTGCAGTGCAAAGTCAGATGGGTGCTGTGGAATCAACCTTTGATGAGATCCCCAACATCTTCGACACCGGTGGCTCCAAAGGGTTGCCCGGAGATTCAGTTGAAAAGATCCCGAATAGGTGGATCGATCAAAATTACCTGCCACAACAATATGGATGCTTCTGGGGAGAAAGTCTCCTGTTCAGTTTGTCTTCAGGATTTTCAGATTGGAGAGACAGTAAGAAGCTTGCCACACTGCCATCACATGTTTCACCTGCCTTGTATAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gly-zipper_Omp Gly-zipper_OmpA Gly-zipper_YMGG zf-RING_2

Protein Analysis

223

Amino Acids

23.92

Weight (kDa)

4.87

Isoelectric Point (pI)

36.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gly-zipper_YMGG	PF13441	50 - 85	9.6e-07	YMGG-like Gly-zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	661
Acc16I	TGCGCA	1 cut(s)	15
Acc36I	ACCTGC	2 cut(s)	546, 661
AccB1I	GGYRCC	1 cut(s)	158
AccBSI	CCGCTC	1 cut(s)	379
AccII	CGCG	1 cut(s)	375
AciI	CCGC	4 cut(s)	104, 360, 373, 379
AclI	AACGTT	1 cut(s)	117
AclWI	GGATC	3 cut(s)	442, 502, 530
AcoI	YGGCCR	1 cut(s)	390
AcsI	RAATTY	1 cut(s)	58
AcuI	CTGAAG	1 cut(s)	576
AflIII	ACRYGT	1 cut(s)	643
AgeI	ACCGGT	1 cut(s)	467
AgsI	TTSAA	4 cut(s)	261, 266, 275, 503
AjuI	GAANNNNNNNTTGG	2 cut(s)	297, 329
AluBI	AGCT	4 cut(s)	185, 227, 251, 625
AluI	AGCT	4 cut(s)	185, 227, 251, 625
Alw26I	GTCTC	4 cut(s)	103, 356, 578, 606
AlwI	GGATC	3 cut(s)	442, 502, 530
AlwNI	CAGNNNCTG	1 cut(s)	251
Ama87I	CYCGRG	1 cut(s)	110
AoxI	GGCC	2 cut(s)	385, 390
ApeKI	GCWGC	1 cut(s)	227
ApoI	RAATTY	1 cut(s)	58
ArsI	GACNNNNNNTTYG	2 cut(s)	169, 201
AsiGI	ACCGGT	1 cut(s)	467
Asp700I	GAANNNNTTC	1 cut(s)	119
AspLEI	GCGC	1 cut(s)	16
AspS9I	GGNCC	1 cut(s)	386
AsuC2I	CCSGG	2 cut(s)	389, 489
AsuHPI	GGTGA	2 cut(s)	127, 642
AvaI	CYCGRG	1 cut(s)	110
BaeGI	GKGCMC	1 cut(s)	161
BanI	GGYRCC	1 cut(s)	158
BbsI	GAAGAC	2 cut(s)	314, 582
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	3 cut(s)	28, 412, 646
BceAI	ACGGC	1 cut(s)	80
BcnI	CCSGG	2 cut(s)	389, 489
BcoDI	GTCTC	4 cut(s)	103, 356, 578, 606
BfaI	CTAG	1 cut(s)	348
BfmI	CTRYAG	1 cut(s)	228
BfuAI	ACCTGC	2 cut(s)	546, 661
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
Bme1390I	CCNGG	2 cut(s)	389, 489
BmeT110I	CYCGRG	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	386
BmiI	GGNNCC	2 cut(s)	160, 475
BmrFI	CCNGG	2 cut(s)	389, 489
BmsI	GCATC	1 cut(s)	545
BpiI	GAAGAC	2 cut(s)	314, 582
BplI	GAGNNNNNCTC	2 cut(s)	558, 590
BpmI	CTGGAG	1 cut(s)	201
Bpu10I	CCTNAGC	1 cut(s)	356
BpuMI	CCSGG	2 cut(s)	389, 489
Bsa29I	ATCGAT	1 cut(s)	525
BsaWI	WCCGGW	1 cut(s)	467
BsaXI	ACNNNNNCTCC	6 cut(s)	216, 246, 483, 513, 601, 631
Bse118I	RCCGGY	1 cut(s)	467
Bse1I	ACTGG	1 cut(s)	184
Bse3DI	GCAATG	2 cut(s)	180, 342
BseCI	ATCGAT	1 cut(s)	525
BseGI	GGATG	1 cut(s)	560
BseMI	GCAATG	2 cut(s)	180, 342
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	184
BseRI	GAGGAG	1 cut(s)	237
BseSI	GKGCMC	1 cut(s)	161
BseXI	GCAGC	1 cut(s)	214
BsgI	GTGCAG	1 cut(s)	423
Bsh1236I	CGCG	1 cut(s)	375
BshFI	GGCC	2 cut(s)	387, 392
BshNI	GGYRCC	1 cut(s)	158
BshTI	ACCGGT	1 cut(s)	467
BshVI	ATCGAT	1 cut(s)	525
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	3 cut(s)	389, 468, 489
BsmAI	GTCTC	4 cut(s)	103, 356, 578, 606
BsmBI	CGTCTC	1 cut(s)	103
BsnI	GGCC	2 cut(s)	387, 392
BsoBI	CYCGRG	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	161
Bsp143I	GATC	5 cut(s)	129, 447, 507, 522, 526
BspACI	CCGC	4 cut(s)	104, 360, 373, 379
BspANI	GGCC	2 cut(s)	387, 392
BspCNI	CTCAG	1 cut(s)	196
BspDI	ATCGAT	1 cut(s)	525
BspFNI	CGCG	1 cut(s)	375
BspLI	GGNNCC	2 cut(s)	160, 475
BspMAI	CTGCAG	1 cut(s)	232
BspMI	ACCTGC	2 cut(s)	546, 661
BspPI	GGATC	3 cut(s)	442, 502, 530
BspT107I	GGYRCC	1 cut(s)	158
BsrBI	CCGCTC	1 cut(s)	379
BsrDI	GCAATG	2 cut(s)	180, 342
BsrFI	RCCGGY	1 cut(s)	467
BsrI	ACTGG	1 cut(s)	184
BssAI	RCCGGY	1 cut(s)	467
BssMI	GATC	5 cut(s)	129, 447, 507, 522, 526
Bst4CI	ACNGT	1 cut(s)	617
BstC8I	GCNNGC	2 cut(s)	377, 627
BstDEI	CTNAG	2 cut(s)	204, 356
BstF5I	GGATG	1 cut(s)	560
BstFNI	CGCG	1 cut(s)	375
BstHHI	GCGC	1 cut(s)	16
BstKTI	GATC	5 cut(s)	132, 450, 510, 525, 529
BstMAI	GTCTC	4 cut(s)	103, 356, 578, 606
BstMBI	GATC	5 cut(s)	129, 447, 507, 522, 526
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 236
BstNSI	RCATGY	1 cut(s)	647
BstSCI	CCNGG	2 cut(s)	387, 487
BstSFI	CTRYAG	1 cut(s)	228
BstSLI	GKGCMC	1 cut(s)	161
BstUI	CGCG	1 cut(s)	375
BstV1I	GCAGC	1 cut(s)	214
BstV2I	GAAGAC	2 cut(s)	314, 582
BstX2I	RGATCY	2 cut(s)	447, 507
BstYI	RGATCY	2 cut(s)	447, 507
Bsu15I	ATCGAT	1 cut(s)	525
BsuRI	GGCC	2 cut(s)	387, 392
BsuTUI	ATCGAT	1 cut(s)	525
BtsCI	GGATG	1 cut(s)	560
BtsI	GCAGTG	2 cut(s)	411, 632
BtsIMutI	CAGTG	2 cut(s)	411, 632
BveI	ACCTGC	2 cut(s)	546, 661
Cac8I	GCNNGC	2 cut(s)	377, 627
CaiI	CAGNNNCTG	1 cut(s)	251
CfoI	GCGC	1 cut(s)	16
Cfr10I	RCCGGY	1 cut(s)	467
Cfr13I	GGNCC	1 cut(s)	386
ClaI	ATCGAT	1 cut(s)	525
CspAI	ACCGGT	1 cut(s)	467
CviAII	CATG	2 cut(s)	394, 644
CviJI	RGCY	7 cut(s)	185, 227, 251, 387, 392, 474, 625
CviKI_1	RGCY	7 cut(s)	185, 227, 251, 387, 392, 474, 625
DdeI	CTNAG	2 cut(s)	204, 356
DpnI	GATC	5 cut(s)	131, 449, 509, 524, 528
DpnII	GATC	5 cut(s)	129, 447, 507, 522, 526
EaeI	YGGCCR	1 cut(s)	390
Eco57I	CTGAAG	1 cut(s)	576
Eco88I	CYCGRG	1 cut(s)	110
Esp3I	CGTCTC	1 cut(s)	103
FaeI	CATG	2 cut(s)	397, 647
FaiI	YATR	4 cut(s)	395, 552, 645, 663
FatI	CATG	2 cut(s)	393, 643
Fnu4HI	GCNGC	1 cut(s)	228
FokI	GGATG	1 cut(s)	567
Fsp4HI	GCNGC	1 cut(s)	228
FspBI	CTAG	1 cut(s)	348
FspI	TGCGCA	1 cut(s)	15
GlaI	GCGC	1 cut(s)	15
GluI	GCNGC	1 cut(s)	228
GsuI	CTGGAG	1 cut(s)	201
HaeIII	GGCC	2 cut(s)	387, 392
HapII	CCGG	3 cut(s)	389, 468, 489
HhaI	GCGC	1 cut(s)	16
Hin1II	CATG	2 cut(s)	397, 647
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
HindIII	AAGCTT	1 cut(s)	623
HinfI	GANTC	4 cut(s)	275, 305, 431, 494
HpaII	CCGG	3 cut(s)	389, 468, 489
HphI	GGTGA	2 cut(s)	127, 642
Hpy188I	TCNGA	3 cut(s)	301, 417, 604
Hpy188III	TCNNGA	5 cut(s)	112, 246, 309, 511, 594
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	2 cut(s)	45, 148
HpyCH4III	ACNGT	1 cut(s)	617
HpyCH4IV	ACGT	3 cut(s)	25, 117, 164
HpyCH4V	TGCA	5 cut(s)	87, 149, 230, 404, 409
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 236
HpyF3I	CTNAG	2 cut(s)	204, 356
HpySE526I	ACGT	3 cut(s)	25, 117, 164
Hsp92II	CATG	2 cut(s)	397, 647
HspAI	GCGC	1 cut(s)	14
Kzo9I	GATC	5 cut(s)	129, 447, 507, 522, 526
LmnI	GCTCC	6 cut(s)	170, 182, 224, 236, 248, 479
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	1 cut(s)	545
MaeI	CTAG	1 cut(s)	348
MaeII	ACGT	3 cut(s)	25, 117, 164
MalI	GATC	5 cut(s)	131, 449, 509, 524, 528
MbiI	CCGCTC	1 cut(s)	379
MboI	GATC	5 cut(s)	129, 447, 507, 522, 526
MboII	GAAGA	6 cut(s)	124, 133, 270, 314, 451, 582
MfeI	CAATTG	1 cut(s)	261
MflI	RGATCY	2 cut(s)	447, 507
MhlI	GDGCHC	1 cut(s)	161
MluCI	AATT	4 cut(s)	58, 261, 312, 532
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	2 cut(s)	42, 215
MroXI	GAANNNNTTC	1 cut(s)	119
MseI	TTAA	1 cut(s)	398
MspI	CCGG	3 cut(s)	389, 468, 489
MspR9I	CCNGG	2 cut(s)	389, 489
MunI	CAATTG	1 cut(s)	261
MvnI	CGCG	1 cut(s)	375
MwoI	GCNNNNNNNGC	2 cut(s)	101, 236
NciI	CCSGG	2 cut(s)	389, 489
NdeII	GATC	5 cut(s)	129, 447, 507, 522, 526
NlaIII	CATG	2 cut(s)	397, 647
NlaIV	GGNNCC	2 cut(s)	160, 475
NsbI	TGCGCA	1 cut(s)	15
NspI	RCATGY	1 cut(s)	647
PaqCI	CACCTGC	1 cut(s)	661
PciI	ACATGT	1 cut(s)	643
PdmI	GAANNNNTTC	1 cut(s)	119
PfeI	GAWTC	4 cut(s)	275, 305, 431, 494
PinAI	ACCGGT	1 cut(s)	467
PkrI	GCNGC	1 cut(s)	229
PscI	ACATGT	1 cut(s)	643
Psp1406I	AACGTT	1 cut(s)	117
PspN4I	GGNNCC	2 cut(s)	160, 475
PspPI	GGNCC	1 cut(s)	386
PstI	CTGCAG	1 cut(s)	232
PstNI	CAGNNNCTG	1 cut(s)	251
PsuI	RGATCY	2 cut(s)	447, 507
SaqAI	TTAA	1 cut(s)	398
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	5 cut(s)	129, 447, 507, 522, 526
Sau96I	GGNCC	1 cut(s)	386
ScrFI	CCNGG	2 cut(s)	389, 489
SduI	GDGCHC	1 cut(s)	161
SfaNI	GCATC	1 cut(s)	545
SfcI	CTRYAG	1 cut(s)	228
SgrAI	CRCCGGYG	1 cut(s)	467
Sse9I	AATT	4 cut(s)	58, 261, 312, 532
SsiI	CCGC	4 cut(s)	104, 360, 373, 379
SspMI	CTAG	1 cut(s)	348
StyD4I	CCNGG	2 cut(s)	387, 487
TaaI	ACNGT	1 cut(s)	617
TaiI	ACGT	3 cut(s)	28, 120, 167
TaqI	TCGA	2 cut(s)	462, 525
TasI	AATT	4 cut(s)	58, 261, 312, 532
TfiI	GAWTC	4 cut(s)	275, 305, 431, 494
Tru1I	TTAA	1 cut(s)	398
Tru9I	TTAA	1 cut(s)	398
TscAI	CASTG	2 cut(s)	411, 639
TseI	GCWGC	1 cut(s)	227
TspDTI	ATGAA	1 cut(s)	318
TspRI	CASTG	2 cut(s)	411, 639
XapI	RAATTY	1 cut(s)	58
XceI	RCATGY	1 cut(s)	647
XmnI	GAANNNNTTC	1 cut(s)	119
XspI	CTAG	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.